LOC122360820 (fam188a,LOC107738860,LOC107689882,LOC107681582,LOC107549210,LOC107717794,LOC107593720)


Basic Information

Item Value
gene id LOC122360820
gene name fam188a,LOC107738860,LOC107689882,LOC107681582,LOC107549210,LOC107717794,LOC107593720
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11412867 ~ 11430889 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261677.1
GTAAGAAAACATTCGTTTCAGACGCAACGCGAACCTGTATGTTACTAAAGCCGTTGTGGCGTGCCGCTGTTAACAGTCTGCGTCTTCAAAAGCTAACGTTCTTTCACGTTTTTGGCGCGAGCGTTCGGTCGCTTATCGCTCGTGGGACAGGTTTACGCACCAGTAGCGCGTCTGTGGCCAATGCCACCTGCTCACCGAAACCAAATCTTTGAGATTGAGCGGAATACAAAAGCAGGCCAGGACGAGTTCGCTAGCCACGTCGCGTGCACTACAGCGGTTAGCTGTCACAAGGATCTCCATTGGTCTCCATGCATGGTTTGAGTTAATATCGGCGAACATCAACAGAAATGTCAGACACTAATAAAGAAGTAGTGGATCTGGTGTGGGGCAGACCCAGTGGCGGAGGAGTGCCTGCGTCCCTCTTCCGCAGGTGGTCACAAGGCTTTGTGTTCAGTGAGGCTGAACGCTCTGCACTGGAGCAGTTTGAAGGTGGACCGTGTGCTGTCATTGCACCTGTGCAGGCTTTCCTGttgaagaacattttgtttaacaCTGAAGGCTCAAACTGGAAAGATATCTCAGAGGAAGAGCAGAGGACAGTCCTGTGCTCCACCCTCAGCGAGATCCTGGAGTCTGCCTGCCTCAGTAAGACACAGGCCTTTCACCTGGCCACTTTGCCTCGTGCTAAAACCACAGACAGCAGTGACATCACTGACAGCCACCCGGAGCCTGAGTCAAGCCAACCTACCGACACACCGActgctTTGGCTGCTGAGGAGCTTGGCTTTGAGAGGTTTCACAGCATCATACAGAAGAGGACTCTCAGGACTGAGGTGGAGTTGAGAGAGGTGGTGCTGTCACTGTACGACACTTGGAAGAACAAATTTGGGGTTCTGCTATTTCTGTACTCTGTCATACTTACAAAGGGAATTGAGAACATAAAGAATGAGATTGAAGACACCACTGAACCTCTGATTGACCCTGTGTATGGCCACGGCAGCCAGAGTCTAATCAACCTTCTGGTGACAGGTCATGCTGTATCTAACGTTTGGGACGGTGATAGAGAATGTTCTGGAATGAagCTTCGTGGCATCCATCAGCAGGCCTCTGTTGGCTTCCTCACACTAATGGAGTCACTGCGCTATTGCAAGgttggcGCATTTCTCAAATCTCCAAAGTTCCCTATTTGGATCCTTGGCAGTGAGACTCATCTTTCAGTATTCTTCACTAAGAAACTCAACTCTGTCCTCAGTGTGGCCATCTCAGTTTCACAGCTTCCTGTGCAGGCTCCTTGTGAACCAGGTTTCTGGATGGTTTCCACATCAGGCTTTGTAGCTGACGGAGAGTCTGATTCACTCTACTTGTTGTTGAGGAAGTAG

Function

NR:

description
PREDICTED: protein FAM188A-like

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261677.1 True 1379 mRNA 0.50 12 11412867 11430889

Neighbor

gene id symbol gene type direction distance location
LOC122360815 adcy2a,LOC108429235,LOC103367001,LOC108272199 coding upstream 434609 10958305 ~ 10978258 (+)
LOC122360813 LOC107746978,LOC107684223,LOC107551206,LOC107751909,LOC107704083,LOC107601659 coding upstream 520888 10890320 ~ 10891979 (+)
LOC122361031 LOC107684222,LOC107746965,LOC107551211,LOC107704084,LOC107751910,LOC107601660 coding upstream 526401 10884225 ~ 10886466 (+)
LOC122360810 triob,LOC107746974,LOC107751902,LOC108429234 coding upstream 612646 10762751 ~ 10800221 (+)
LOC122360809 LOC107692009,LOC107742337,LOC107591288,LOC107709507,LOC107662260 coding upstream 763766 10621027 ~ 10649101 (+)
LOC122360821 NA coding downstream 30714 11461603 ~ 11463812 (+)
LOC122359888 NA coding downstream 42365 11473254 ~ 11476580 (+)
LOC122361125 cbx3b,LOC107596654,LOC107685582,LOC107744695,LOC107743152,LOC107550827,LOC107684532 coding downstream 140872 11571761 ~ 11575254 (+)
snx10b snx10b,LOC107743219,LOC107596759,LOC107685610,LOC107684554,LOC107744712,LOC108441519 coding downstream 144900 11575789 ~ 11578023 (+)
tax1bp1b LOC107743155,LOC107685538,LOC107684534,LOC107744700,LOC107550830,LOC107596651 coding downstream 231938 11662827 ~ 11686691 (+)
G111456 NA non-coding upstream 79189 11333154 ~ 11333678 (+)
G111438 NA non-coding upstream 151497 11261092 ~ 11261370 (+)
G111417 enpp2,LOC107697648,LOC107574906,LOC107681346,LOC107757440,LOC107745056,LOC107574778,LOC106573026 non-coding upstream 189898 11213786 ~ 11222969 (+)
G111394 NA non-coding upstream 252063 11160124 ~ 11160804 (+)
G111271 NA non-coding upstream 841899 10570659 ~ 10570968 (+)
G111484 LOC107581612,LOC107752837,LOC107662667 non-coding downstream 10302 11441191 ~ 11443232 (+)
G111485 LOC107662667,LOC107581612 non-coding downstream 13988 11444877 ~ 11445996 (+)
G111486 NA non-coding downstream 15213 11446102 ~ 11447370 (+)
G111487 NA non-coding downstream 21162 11452051 ~ 11453556 (+)
G111504 NA non-coding downstream 63730 11494619 ~ 11496124 (+)
G111415 LOC107757440,LOC107697648,LOC107574906,LOC107745056 other upstream 201600 11204957 ~ 11211267 (+)
LOC122360811 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 561429 10826603 ~ 10851438 (+)
LOC122361026 LOC107708300 other upstream 684407 10670957 ~ 10728460 (+)
enpp2 enpp2,LOC107757440,LOC107697648,LOC107574906,LOC107745056,LOC107681346 other upstream 903292 10493034 ~ 10509575 (+)
G111161 LOC107746965,LOC107684222,LOC107551211 other upstream 1338816 10073675 ~ 10074051 (+)
LOC122359964 pde11al,LOC107743218,LOC107684552,LOC103364058,LOC107685581,LOC107596730,LOC107550795,LOC107744711,LOC108441531 other downstream 94407 11525296 ~ 11542239 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other downstream 675222 12106111 ~ 12137846 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other downstream 948814 12379703 ~ 12390785 (+)
LOC122359987 LOC107685557 other downstream 1043628 12474517 ~ 12476508 (+)
nbeal2 nbeal2,LOC107596634,LOC107752840,LOC107685597,LOC107743212,LOC107673027,LOC107581539 other downstream 1069182 12500071 ~ 12556358 (+)

Expression


Co-expression Network