cdc42ep5 (LOC107750006,LOC107692549,LOC107673022,LOC107737909,LOC107549454,LOC107598423)


Basic Information

Item Value
gene id cdc42ep5
gene name LOC107750006,LOC107692549,LOC107673022,LOC107737909,LOC107549454,LOC107598423
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13148255 ~ 13150690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261052.1
ggaaaaaaaaatacaaaggcTTCGTCAGCcagtgttttcattcactgttaCAGATGTACCCAGAGCGCTCCCATACAAAGTCACGTCACTTCCTTGCCCATccctaaaggaaaaaaaaaaaagaaatatcgGAGAGAAGAGCGACGCCAGAAAAGTCAGTAAAAGAGGGAAAGCGAAAGATATTTAAAGAAGCGTCTGGTTGCAGCGGGAACAAATAGGCGCAAGCTCGCTGATAAGCACGCGGCGATCAAACTTCATTGGACGGGACGACGCATTCCTGGACAAAAAGTTGCTACCATGCCTCTCCACAAATCATCTTCTCGAACCCCGCGCCTGGACCCCACCATGATCTCCGCTCCACTGGGTGATTTCCGTCACACCATGCACATTGGTCGAGGTGGAGACGCTTTTGGCGACACCTCCTTCCTGTCCAGCCACGGCCCCTCTAGTCCTAATCCCACATCTGCGCAACAACCAGCCATGGCAGCCACCGTAGAGACCACAGACAATACGATGAACCACAACCATGAAATTGAATATGCAGAAGATGCCAGTCCCAATGAGCTCCGGCACTCCGATTCAGTTTCTTCCTTTGACCTCGACTTGGATTTAGGGCCCTCGATTTTGGGAGATGTGCTGGGGGTGATGGACGGACTGACGATGGGCTCTGACAAAGACAATGAAGACGTTTTCAGTCCCAGCAGGAGCACGAGAGATGTGATGATGTCTCCAAGGAGTGCTGCCAATGAGCTGAGCGAGAGGATGAGGATGGAAAGTTTGACCAAAGAGGCGAGCCATCGAGATGAGCAGCTGAATGAGGTGAACGGCGTCAAGTCAAAAGGGCTCAGGCCCAAAGTGCGATTCAGCGACAAACGCGATGAGATCATCGGTCGACAGGAAGTGATCGAAGGGCTAGATGTGGAAGCTGAAGAAGAAATGGGCTTGAGCCCACATAAACGGATGCAAGAGATTAGTGGGAGAACGGCTCACGACAAAGACCCAAGACAAGCAGAAGTGGTTAATCGGAGGGAGGACAACTCTCCAAGCCTCTCTTCCTCAGTCAGCTCAGAATACGAGGGAGTCTCACCTCTGGACCGGAGGAGAGAAGACCAGCACCTTTCAGAAACAGATTCAGAGGAGGAAGGTGCCAACGGACAACAGGGCTACACTTTTGAGGACGAATTCGATGATGAGATTGGTCTTTAAGAGACATCGCGAGCGATTCGAGGACCAAAAATAAGTCATTGGCGTATGAATCATGACATAtgaacagaattattt
>XM_043261053.1
gcaggggggaaaaaaaaatacaaaggcTTCGTCAGCcagtgttttcattcactgttaCAGATGTACCCAGAGCGCTCCCATACAAAGTCACGTCACTTCCTTGCCCATccctaaaggaaaaaaaaaaaagaaatatcgGAGAGAAGAGCGACGCCAGAAAAGTCAGTAAAAGAGGGAAAGCGAAAGATATTTAAAGAAGCGTCTGGTTGCAGCGGGAACAAATAGGCGCAAGCTCGCTGATAAGCACGCGGCGATCAAACTTCATTGGACGGGACGACGCATTCCTGGACAAAAAGGCAGTTGCTACCATGCCTCTCCACAAATCATCTTCTCGAACCCCGCGCCTGGACCCCACCATGATCTCCGCTCCACTGGGTGATTTCCGTCACACCATGCACATTGGTCGAGGTGGAGACGCTTTTGGCGACACCTCCTTCCTGTCCAGCCACGGCCCCTCTAGTCCTAATCCCACATCTGCGCAACAACCAGCCATGGCAGCCACCGTAGAGACCACAGACAATACGATGAACCACAACCATGAAATTGAATATGCAGAAGATGCCAGTCCCAATGAGCTCCGGCACTCCGATTCAGTTTCTTCCTTTGACCTCGACTTGGATTTAGGGCCCTCGATTTTGGGAGATGTGCTGGGGGTGATGGACGGACTGACGATGGGCTCTGACAAAGACAATGAAGACGTTTTCAGTCCCAGCAGGAGCACGAGAGATGTGATGATGTCTCCAAGGAGTGCTGCCAATGAGCTGAGCGAGAGGATGAGGATGGAAAGTTTGACCAAAGAGGCGAGCCATCGAGATGAGCAGCTGAATGAGGTGAACGGCGTCAAGTCAAAAGGGCTCAGGCCCAAAGTGCGATTCAGCGACAAACGCGATGAGATCATCGGTCGACAGGAAGTGATCGAAGGGCTAGATGTGGAAGCTGAAGAAGAAATGGGCTTGAGCCCACATAAACGGATGCAAGAGATTAGTGGGAGAACGGCTCACGACAAAGACCCAAGACAAGCAGAAGTGGTTAATCGGAGGGAGGACAACTCTCCAAGCCTCTCTTCCTCAGTCAGCTCAGAATACGAGGGAGTCTCACCTCTGGACCGGAGGAGAGAAGACCAGCACCTTTCAGAAACAGATTCAGAGGAGGAAGGTGCCAACGGACAACAGGGCTACACTTTTGAGGACGAATTCGATGATGAGATTGGTCTTTAAGAGACATCGCGAGCGATTCGAGGACCAAAAATAAGTCATTGGCGTATGAATCATGACATAtgaacagaattattt

Function

NR:

description
uncharacterized protein LOC110536887

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261052.1 False 1281 mRNA 0.50 3 13148262 13150690
XM_043261053.1 True 1292 mRNA 0.50 3 13148255 13150690

Neighbor

gene id symbol gene type direction distance location
rcvrn2 rcvrn2,LOC107692546,LOC107737906,LOC107750003,LOC107673041,LOC107598428,LOC108266978,LOC105905461 coding upstream 13183 13130397 ~ 13135072 (+)
trim109 trim109,LOC107673003,LOC107692543,LOC107707169,LOC107598446,LOC107596703 coding upstream 47530 13094391 ~ 13100725 (+)
LOC122360779 LOC107685579,LOC107743194,LOC107673015,LOC107707165,LOC107598430 coding upstream 57453 13067016 ~ 13090802 (+)
rnf115a rnf115,LOC107685578,LOC107743193,LOC107598434,LOC107596622,LOC107707171 coding upstream 92181 13048819 ~ 13056074 (+)
itga10 itga10,LOC107743189,LOC107596623,LOC107685574,LOC107673033,LOC107707172,LOC107598435 coding upstream 105734 13007935 ~ 13042521 (+)
leng9 LOC107549457,LOC107750010,LOC107692553 coding downstream 20655 13171345 ~ 13176239 (+)
ttyh1 LOC107598419,LOC107737914,LOC107549458,LOC107673038,LOC107750018 coding downstream 26835 13177525 ~ 13200626 (+)
ube2s ube2s,LOC107750012,LOC107549462,LOC107692555,LOC107737918,LOC107598418 coding downstream 55447 13206137 ~ 13210102 (+)
LOC122360726 LOC107549463,LOC107692556,LOC107737917,LOC107598416,LOC107750019,LOC107673009 coding downstream 61249 13211939 ~ 13227650 (+)
si:dkeyp-69b9.6 LOC107750013,LOC107737915,LOC107692557,LOC107549464,LOC107673008 coding downstream 77387 13228077 ~ 13236831 (+)
G111998 NA non-coding upstream 1834 13141213 ~ 13146421 (+)
G111987 LOC107692542,LOC107596619 non-coding upstream 41101 13106286 ~ 13107154 (+)
G111978 NA non-coding upstream 45027 13066293 ~ 13103228 (+)
G111822 NA non-coding upstream 547161 12598914 ~ 12601094 (+)
G111810 NA non-coding upstream 590677 12556489 ~ 12557578 (+)
G111993 NA non-coding downstream 8112 13158802 ~ 13160948 (+)
G112011 NA non-coding downstream 119188 13269878 ~ 13270193 (+)
G112006 NA non-coding downstream 153892 13304582 ~ 13308763 (+)
G112046 NA non-coding downstream 386095 13536785 ~ 13543333 (+)
LOC122361042 LOC107724977,LOC107692585,LOC107672983,LOC107549448,LOC107598400,LOC107744312 non-coding downstream 396351 13547041 ~ 13552978 (+)
nbeal2 nbeal2,LOC107596634,LOC107752840,LOC107685597,LOC107743212,LOC107673027,LOC107581539 other upstream 591897 12500071 ~ 12556358 (+)
LOC122359987 LOC107685557 other upstream 671747 12474517 ~ 12476508 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other upstream 757470 12379703 ~ 12390785 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other upstream 1010409 12106111 ~ 12137846 (+)
LOC122359964 pde11al,LOC107743218,LOC107684552,LOC103364058,LOC107685581,LOC107596730,LOC107550795,LOC107744711,LOC108441531 other upstream 1606016 11525296 ~ 11542239 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other downstream 380479 13531169 ~ 13544412 (+)
LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 other downstream 455917 13606607 ~ 13609407 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other downstream 460559 13611249 ~ 13619347 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other downstream 713931 13864621 ~ 13867229 (+)
LOC122360840 LOC107582135 other downstream 2128354 15279044 ~ 15282980 (+)

Expression


Co-expression Network