ube2s (ube2s,LOC107750012,LOC107549462,LOC107692555,LOC107737918,LOC107598418)


Basic Information

Item Value
gene id ube2s
gene name ube2s,LOC107750012,LOC107549462,LOC107692555,LOC107737918,LOC107598418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13206137 ~ 13210102 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261830.1
tttttgttccTGTGTCAAAAAGACTGCTAGCTGGTAACAGGCTACGGTAGCCGTCTGTGGCCGTTAGCTGTCGAGCAAACCAACTTTTTTCAGACGAAACTGACAACACGTTGGACTTTAAAACTTCTAGACGGCACATTTCATCCGAGGGCGACAACGGATAACAGTTTCACGAAGGAGAGCTCTGGAGAGCAGTTAGATATCTTCGTTTCTCGGCAAAGCCCATCGTTAGCTTAGCTCGGATTGGTAGCAGCACCAGCAAGCCGACCGACATTACAGTGAGAAATAGGTTTGGTTAACTTGTGGGTTCTTGAAACGTCTTAGTAGATTTTGCAGTCTTGATTGATTGCGGCTTTTAGGTTCGTTGTCGTTGGTTTCCGTCGGTCTCGGTGTGGATCTCCGGATCAGTCTCGTCGGCCGGTTGGGCAGCAGTTAGCCAAGTTTTCTCATTCGAGACAAATTTGCTGGCTATTATAAAACCCCACGCAGCTGGAAATGAATTCAAACGTGGAGAACTTGCCGCCTCAAGTGTTGAGACTGGTCTATAAAGAGGTTTCTGCGTTGGCAGCCGACCCTCCTGAGGGAATCAAAATCTACCCCAGTGAAGAGGATATCACAGAGCTGCACACTGCCATTGAGGGCCCAGAAGGAACACCGTATGCAGGAGGGGTGTTTCGGATGCGTCTGGTTCTTGGGAAGGATTTTCCCGCTGCACCTCCCAGAGGCTATTTCCTAACTAAGATTTTTCATCCTAATGTTGGGCACAAGGGTGAAATCTGTGTCAATGTGCTGAAAAGAGACTGGAAGGCAGAGCTTGGCCTGAGACATGTATTGCTAACTATCAAGTGCCTTCTGATCCATCCTAACCCAGAGTCTGCCCTGAACGAAGAGGCTGGGAGGTTACTTTTGGAGGACTATAAGGAGTATGCGTCCCGTGCTCACCTTCTAACAGAGATCCATGCCATGGGAGGCACGTCAGGGGCCCCTCAAGAGCCCGCCGATGGACCACAACCCAAAAAGCATGCAGGAGACCCAAACAAACGTGTAGCCGGGGCCGGTTTGGTAACAAATGGTGTTGCCGCCAACAATTTAAGTAACAGCAGCTCCAGCGGCACGAGCAGTAGCAATACTAATATAGTTGCAAAGAAGAAAACGGATAAAAAACGAGCTCTGAGGCGGCTATAAGAGAGAACGAGTCTGTgctatgtgtgtacatataaatattgaaGTGTGCAGACCACCTTTTCTCCTCCTTAATCTGTCTTACCATTTTTAGGATAACGCATTCATCTTGTCACGCTCCTATCAGATCACTCCTCTCGTTTTTGTTCCCTTGTCTCTTTCAACTTGCTCTCAGGACTTGAACTGTCTTTGCGACAATTCTTTGTTTCGTTCACAAAAGGGGTTTTCATCTGTATTTCAGAAGTTTTACAATTgtttagaaaatgaaaacagtagTAAAAGTTTTTGACAAAGTTCATTTGTGGCCTCTAGAGTTATCATGACCATAAGCAGGATTTTGGTGTGTACTGTCGGCAcagaatttataatatatttagattgCAGGTGTGATGATGGGACGCTTACTGTAATGCTGTCCTGTTGTAGTTGGACTGAACCCAtacatttctctttcttttgtctttccTCCTTCAGGGGTTTAATGAAGAATAGTACATTGCACAGAATATGACTGTTGTGTTTGTGGTGAAAGAGAGGCAGGATCAGGAATAACAGAGGGAGTTAAAATGTGGTCTGAatattactttgttttttttgttttttttatatgtgtggtattttaattgtttccagtttttactaaatttgtctgtctgtttctattttgTAGTTCACTTTTCGGAAGgcctttttccatttttaagtGAACGGCTATATTTCCCTGACGCTTGAGATTGAGTCCTTAAAGCCTTTCCGCCAGTCAGGGCAGAGCAATGGGGCTAATAATTAATCATGAAATATACGAGCCAGAAGTGGTGTTCGGTCTCATCCTTCAAATGAACTAGTTTGGTTATTCTTTTCAATAAGAACGTTAATCCCCTTTTTATATGACCACAGTTGCTATTTTCTCTGGCTCTGCTGGTCTTTCAATCAAAAGGCTGTTAAGGAACCTTCTCTTTGTTGTTGCATTTGTAATGGGCCTTCAGTTCCCAAAGATCCTCTCTAACAAAGTGATACGAACTTCAGACAATGTGTTTGCAGAAACAGTTTGCCCGTATTTAAAAGTTTGTGAATAAACAATAGGGCATTTTGTGGCCattatttaagttatttaaattaataagaaataaaggaATTTTAGG
>XM_043261831.1
tttttgttccTGTGTCAAAAAGACTGCTAGCTGGTAACAGGCTACGGTAGCCGTCTGTGGCCGTTAGCTGTCGAGCAAACCAACTTTTTTCAGACGAAACTGACAACACGTTGGACTTTAAAACTTCTAGACGGCACATTTCATCCGAGGGCGACAACGGATAACAGTTTCACGAAGGAGAGCTCTGGAGAGCAGTTAGATATCTTCGTTTCTCGGCAAAGCCCATCGTTAGCTTAGCTCGGATTGGTAGCAGCACCAGCAAGCCGACCGACATTACAGTTCGTTGTCGTTGGTTTCCGTCGGTCTCGGTGTGGATCTCCGGATCAGTCTCGTCGGCCGGTTGGGCAGCAGTTAGCCAAGTTTTCTCATTCGAGACAAATTTGCTGGCTATTATAAAACCCCACGCAGCTGGAAATGAATTCAAACGTGGAGAACTTGCCGCCTCAAGTGTTGAGACTGGTCTATAAAGAGGTTTCTGCGTTGGCAGCCGACCCTCCTGAGGGAATCAAAATCTACCCCAGTGAAGAGGATATCACAGAGCTGCACACTGCCATTGAGGGCCCAGAAGGAACACCGTATGCAGGAGGGGTGTTTCGGATGCGTCTGGTTCTTGGGAAGGATTTTCCCGCTGCACCTCCCAGAGGCTATTTCCTAACTAAGATTTTTCATCCTAATGTTGGGCACAAGGGTGAAATCTGTGTCAATGTGCTGAAAAGAGACTGGAAGGCAGAGCTTGGCCTGAGACATGTATTGCTAACTATCAAGTGCCTTCTGATCCATCCTAACCCAGAGTCTGCCCTGAACGAAGAGGCTGGGAGGTTACTTTTGGAGGACTATAAGGAGTATGCGTCCCGTGCTCACCTTCTAACAGAGATCCATGCCATGGGAGGCACGTCAGGGGCCCCTCAAGAGCCCGCCGATGGACCACAACCCAAAAAGCATGCAGGAGACCCAAACAAACGTGTAGCCGGGGCCGGTTTGGTAACAAATGGTGTTGCCGCCAACAATTTAAGTAACAGCAGCTCCAGCGGCACGAGCAGTAGCAATACTAATATAGTTGCAAAGAAGAAAACGGATAAAAAACGAGCTCTGAGGCGGCTATAAGAGAGAACGAGTCTGTgctatgtgtgtacatataaatattgaaGTGTGCAGACCACCTTTTCTCCTCCTTAATCTGTCTTACCATTTTTAGGATAACGCATTCATCTTGTCACGCTCCTATCAGATCACTCCTCTCGTTTTTGTTCCCTTGTCTCTTTCAACTTGCTCTCAGGACTTGAACTGTCTTTGCGACAATTCTTTGTTTCGTTCACAAAAGGGGTTTTCATCTGTATTTCAGAAGTTTTACAATTgtttagaaaatgaaaacagtagTAAAAGTTTTTGACAAAGTTCATTTGTGGCCTCTAGAGTTATCATGACCATAAGCAGGATTTTGGTGTGTACTGTCGGCAcagaatttataatatatttagattgCAGGTGTGATGATGGGACGCTTACTGTAATGCTGTCCTGTTGTAGTTGGACTGAACCCAtacatttctctttcttttgtctttccTCCTTCAGGGGTTTAATGAAGAATAGTACATTGCACAGAATATGACTGTTGTGTTTGTGGTGAAAGAGAGGCAGGATCAGGAATAACAGAGGGAGTTAAAATGTGGTCTGAatattactttgttttttttgttttttttatatgtgtggtattttaattgtttccagtttttactaaatttgtctgtctgtttctattttgTAGTTCACTTTTCGGAAGgcctttttccatttttaagtGAACGGCTATATTTCCCTGACGCTTGAGATTGAGTCCTTAAAGCCTTTCCGCCAGTCAGGGCAGAGCAATGGGGCTAATAATTAATCATGAAATATACGAGCCAGAAGTGGTGTTCGGTCTCATCCTTCAAATGAACTAGTTTGGTTATTCTTTTCAATAAGAACGTTAATCCCCTTTTTATATGACCACAGTTGCTATTTTCTCTGGCTCTGCTGGTCTTTCAATCAAAAGGCTGTTAAGGAACCTTCTCTTTGTTGTTGCATTTGTAATGGGCCTTCAGTTCCCAAAGATCCTCTCTAACAAAGTGATACGAACTTCAGACAATGTGTTTGCAGAAACAGTTTGCCCGTATTTAAAAGTTTGTGAATAAACAATAGGGCATTTTGTGGCCattatttaagttatttaaattaataagaaataaaggaATTTTAGG

Function

symbol description
ube2s Predicted to enable ubiquitin conjugating enzyme activity. Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in several processes, including cellular protein metabolic process; free ubiquitin chain polymerization; and positive regulation of ubiquitin protein ligase activity. Predicted to act upstream of or within cell division. Predicted to be part of anaphase-promoting complex. Predicted to be active in nucleus. Orthologous to human UBE2S (ubiquitin conjugating enzyme E2 S).

NR:

description
ubiquitin-conjugating enzyme E2 S

GO:

id name namespace
GO:0010994 free ubiquitin chain polymerization biological_process
GO:0010458 exit from mitosis biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10583 UBE2S, E2EPF; ubiquitin-conjugating enzyme E2 S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261830.1 True 2324 mRNA 0.43 4 13206137 13210102
XM_043261831.1 False 2243 mRNA 0.43 5 13206137 13210102

Neighbor

gene id symbol gene type direction distance location
ttyh1 LOC107598419,LOC107737914,LOC107549458,LOC107673038,LOC107750018 coding upstream 5511 13177525 ~ 13200626 (+)
leng9 LOC107549457,LOC107750010,LOC107692553 coding upstream 29898 13171345 ~ 13176239 (+)
cdc42ep5 LOC107750006,LOC107692549,LOC107673022,LOC107737909,LOC107549454,LOC107598423 coding upstream 55447 13148255 ~ 13150690 (+)
rcvrn2 rcvrn2,LOC107692546,LOC107737906,LOC107750003,LOC107673041,LOC107598428,LOC108266978,LOC105905461 coding upstream 71065 13130397 ~ 13135072 (+)
trim109 trim109,LOC107673003,LOC107692543,LOC107707169,LOC107598446,LOC107596703 coding upstream 105412 13094391 ~ 13100725 (+)
LOC122360726 LOC107549463,LOC107692556,LOC107737917,LOC107598416,LOC107750019,LOC107673009 coding downstream 1837 13211939 ~ 13227650 (+)
si:dkeyp-69b9.6 LOC107750013,LOC107737915,LOC107692557,LOC107549464,LOC107673008 coding downstream 17975 13228077 ~ 13236831 (+)
dbpb dbpb,LOC107692558,LOC107549465,LOC107598412,LOC107673010,LOC107750014 coding downstream 28029 13238131 ~ 13249212 (+)
ntd5 ntd5,LOC107692575,LOC107549440,LOC107672996,LOC107598413,LOC107750020 coding downstream 42229 13252331 ~ 13261257 (+)
LOC122360763 LOC107692560,LOC107750015,LOC107549466,LOC107737920,LOC107673047,LOC107598411 coding downstream 51906 13262008 ~ 13269125 (+)
G111993 NA non-coding upstream 45189 13158802 ~ 13160948 (+)
G111998 NA non-coding upstream 59716 13141213 ~ 13146421 (+)
G111987 LOC107692542,LOC107596619 non-coding upstream 98983 13106286 ~ 13107154 (+)
G111978 NA non-coding upstream 102909 13066293 ~ 13103228 (+)
G111822 NA non-coding upstream 605043 12598914 ~ 12601094 (+)
G112011 NA non-coding downstream 59776 13269878 ~ 13270193 (+)
G112006 NA non-coding downstream 94480 13304582 ~ 13308763 (+)
G112046 NA non-coding downstream 326683 13536785 ~ 13543333 (+)
LOC122361042 LOC107724977,LOC107692585,LOC107672983,LOC107549448,LOC107598400,LOC107744312 non-coding downstream 336939 13547041 ~ 13552978 (+)
G112066 NA non-coding downstream 466918 13677020 ~ 13679008 (+)
nbeal2 nbeal2,LOC107596634,LOC107752840,LOC107685597,LOC107743212,LOC107673027,LOC107581539 other upstream 649779 12500071 ~ 12556358 (+)
LOC122359987 LOC107685557 other upstream 729629 12474517 ~ 12476508 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other upstream 815352 12379703 ~ 12390785 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other upstream 1068291 12106111 ~ 12137846 (+)
LOC122359964 pde11al,LOC107743218,LOC107684552,LOC103364058,LOC107685581,LOC107596730,LOC107550795,LOC107744711,LOC108441531 other upstream 1663898 11525296 ~ 11542239 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other downstream 321067 13531169 ~ 13544412 (+)
LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 other downstream 396505 13606607 ~ 13609407 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other downstream 401147 13611249 ~ 13619347 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other downstream 654519 13864621 ~ 13867229 (+)
LOC122360840 LOC107582135 other downstream 2068942 15279044 ~ 15282980 (+)

Expression


Co-expression Network