ntd5 (ntd5,LOC107692575,LOC107549440,LOC107672996,LOC107598413,LOC107750020)


Basic Information

Item Value
gene id ntd5
gene name ntd5,LOC107692575,LOC107549440,LOC107672996,LOC107598413,LOC107750020
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13252331 ~ 13261257 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260330.1
CTCAATACGATCCAGATGTGTGTGTTCTTGCATGTACGGCGTCTCCACTCCTCCCTCGCCATCACACCATCACAAAAACCCCCTCCTCCAGACTCTCCCCAATCTTTATATCCCCTCTCCTGTCTCGCTACCTCTTTCAAAACCTCTGCAGCGGGTGTCTGGGAGAGATGGAGCGATCTCTGCTTGTgtcttttctgtgtgtgtgggccCTCAGCAGCCTGTCTGCAGCATCAGAACTGtagttttgaatactttttggaaagacatgTGGATGCAACAGAACAGTGCCCAGAGAGGATGCTGGGTAACGAGAGAAGACAAACGTGCCCAAAAAAGTGTCAGCAAGATAAAGACTGTGGCAACAAACGCCAGTGTCTCTGCGACGGCCAGTGTGGACTCAGCTGTGTGGCCCCAGGTCGCACGTGTCCTTGGCCTCTCCCACCTGGAAAGAATTTTGATGTAGCCCTTCTTTCCCCTTCACCCTCTTTCTCCGCTCTGCTCGAGGTTCGCTGTGAGCCCGGGTTCACCATGCATAACGGGCTGGACACTACAATACGCCGTTGCCAAGGCGACCGGCAGTGGAGTGGAGACGAGCCTGTTTGTACAGCCTCCTCAGGAGGAGGTCCTGCAGCAGAGCCGGTTCTGGTTCCTGAGGTGTCCTGTACTTtgcctgatgatgatgatctgCTCTCTGTGCAGGGCAGCGCTATCGTGGGATCCAACATCCAGTACCAATGTGCACCTGGATCTGTGCTGATTGGAAATAGTGATAATGTCTGTCATGAGAACCAGACGTGGCAGTACCCTCACCCCATCTGTCAACGTGTGGTTTGTCCTCCTCCTAAGGAGGTTGAACGTGGACATCTGGTGGCTGTCCAGAGAACTGAATATGAAGTGGGCGATACAATCTACTATCTCTGCAAGAAGAACTTCTTGCTGGACGGACCAAATCAAGTGACTTGTTTACCTAATGGGACATGGAGTGCAGAGCCTGCCTGCCGGGCCCGCTGTCCAGTCCCAGCTCAACGCAGCAGGGTGATCGTGGGAGGAGTAAAGCGTTGGCCATATGATCTGACGGATGGTGTGGTTGCTCATGGAGAGAATGTGACATTTTTCTGTAAACATCCAGAAAAACTGTGCAGCTTCACTGCCACGGAGGTCTGTGTGGACGGACAGCTAGAGCAACCTAGCTGCTATCTTGACCCCACCTGGCTGCAGTTCAAGCTCTTTCCTCATCGGCTGGTTTCAGAGATTGATCCATGTGATCCCGCTGACCTTCAGTGAACTCATTAAATTTTGACAACACATTTTGCAGGTTGGCGCACACCGCTCTCTTTTCACTCTGAGACCATGATCTGGAGTCTGGATCaacataaattgtattattaacatGCCAACTCGGTTTGTTTTTGGAACGGATCTCAGTAGGATCTCACAGTTATGCCTCATTTAACTATTTTCTTTGTTGTGTGTTGCATTGACAAAGTTACCTTAAACAGAATTTGTGTCATAATTGATATGTGCAAACACCCTCATACTTGCTTGAGGTCTTGGTTGCTGCAAGCTGCTCTCCtttcatgtattttattgtcataCAACGTGTAAAACTGATTTTTGATGTAGAGTTGGTGTTTATcttgttataatattttatttcttctcaAACCCACAACCAGTGCAGAGGCTAAAGGTGAACTCAGAAACCATGCCATGTACTGATGCTCTTTGTATGCCAAAAGCAGTTTTATGATATGTTTAGAGGTAACTGATCTTTGACTGGACTGCTTAATCGGATTGGATTACATCAATAAAACTTATTATAGCATAAAGCCTTGCTTAATTATTGCTGTTATACAGATTCAGTTTTGCATTGTGTAAACTTCGCAGTGAATCatcttcaaatgttttttcttcttgaaTTAAAGAAACTGGAGTGTTTgttgtcatt
>XM_043260331.1
CCCAATCTTTATATCCCCTCTCCTGTCTCGCTACCTCTTTCAAAACCTCTGCAGCGGGTGTCTGGGAGAGATGGAGCGATCTCTGCTTGTgtcttttctgtgtgtgtgggccCTCAGCAGCCTGTCTGCAGCATCAGTGGATGCAACAGAACAGTGCCCAGAGAGGATGCTGGGTAACGAGAGAAGACAAACGTGCCCAAAAAAGTGTCAGCAAGATAAAGACTGTGGCAACAAACGCCAGTGTCTCTGCGACGGCCAGTGTGGACTCAGCTGTGTGGCCCCAGGTCGCACGTGTCCTTGGCCTCTCCCACCTGGAAAGAATTTTGATGTAGCCCTTCTTTCCCCTTCACCCTCTTTCTCCGCTCTGCTCGAGGTTCGCTGTGAGCCCGGGTTCACCATGCATAACGGGCTGGACACTACAATACGCCGTTGCCAAGGCGACCGGCAGTGGAGTGGAGACGAGCCTGTTTGTACAGCCTCCTCAGGAGGAGGTCCTGCAGCAGAGCCGGTTCTGGTTCCTGAGGTGTCCTGTACTTtgcctgatgatgatgatctgCTCTCTGTGCAGGGCAGCGCTATCGTGGGATCCAACATCCAGTACCAATGTGCACCTGGATCTGTGCTGATTGGAAATAGTGATAATGTCTGTCATGAGAACCAGACGTGGCAGTACCCTCACCCCATCTGTCAACGTGTGGTTTGTCCTCCTCCTAAGGAGGTTGAACGTGGACATCTGGTGGCTGTCCAGAGAACTGAATATGAAGTGGGCGATACAATCTACTATCTCTGCAAGAAGAACTTCTTGCTGGACGGACCAAATCAAGTGACTTGTTTACCTAATGGGACATGGAGTGCAGAGCCTGCCTGCCGGGCCCGCTGTCCAGTCCCAGCTCAACGCAGCAGGGTGATCGTGGGAGGAGTAAAGCGTTGGCCATATGATCTGACGGATGGTGTGGTTGCTCATGGAGAGAATGTGACATTTTTCTGTAAACATCCAGAAAAACTGTGCAGCTTCACTGCCACGGAGGTCTGTGTGGACGGACAGCTAGAGCAACCTAGCTGCTATCTTGACCCCACCTGGCTGCAGTTCAAGCTCTTTCCTCATCGGCTGGTTTCAGAGATTGATCCATGTGATCCCGCTGACCTTCAGTGAACTCATTAAATTTTGACAACACATTTTGCAGGTTGGCGCACACCGCTCTCTTTTCACTCTGAGACCATGATCTGGAGTCTGGATCaacataaattgtattattaacatGCCAACTCGGTTTGTTTTTGGAACGGATCTCAGTAGGATCTCACAGTTATGCCTCATTTAACTATTTTCTTTGTTGTGTGTTGCATTGACAAAGTTACCTTAAACAGAATTTGTGTCATAATTGATATGTGCAAACACCCTCATACTTGCTTGAGGTCTTGGTTGCTGCAAGCTGCTCTCCtttcatgtattttattgtcataCAACGTGTAAAACTGATTTTTGATGTAGAGTTGGTGTTTATcttgttataatattttatttcttctcaAACCCACAACCAGTGCAGAGGCTAAAGGTGAACTCAGAAACCATGCCATGTACTGATGCTCTTTGTATGCCAAAAGCAGTTTTATGATATGTTTAGAGGTAACTGATCTTTGACTGGACTGCTTAATCGGATTGGATTACATCAATAAAACTTATTATAGCATAAAGCCTTGCTTAATTATTGCTGTTATACAGATTCAGTTTTGCATTGTGTAAACTTCGCAGTGAATCatcttcaaatgttttttcttcttgaaTTAAAGAAACTGGAGTGTTTgttgtc

Function

symbol description
ntd5 Predicted to enable heparin binding activity and peptidase inhibitor activity. Predicted to be located in extracellular region. Is expressed in several structures, including axis; chordo neural hinge; fin; hypochord; and mesoderm.

NR:

description
beta-2-glycoprotein 1-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG:

id description
K17305 APOH, B2G1; beta-2-glycoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260330.1 True 1948 mRNA 0.47 9 13252331 13261257
XM_043260331.1 False 1814 mRNA 0.47 8 13252428 13261254

Neighbor

gene id symbol gene type direction distance location
dbpb dbpb,LOC107692558,LOC107549465,LOC107598412,LOC107673010,LOC107750014 coding upstream 3119 13238131 ~ 13249212 (+)
si:dkeyp-69b9.6 LOC107750013,LOC107737915,LOC107692557,LOC107549464,LOC107673008 coding upstream 15500 13228077 ~ 13236831 (+)
LOC122360726 LOC107549463,LOC107692556,LOC107737917,LOC107598416,LOC107750019,LOC107673009 coding upstream 24681 13211939 ~ 13227650 (+)
ube2s ube2s,LOC107750012,LOC107549462,LOC107692555,LOC107737918,LOC107598418 coding upstream 42229 13206137 ~ 13210102 (+)
ttyh1 LOC107598419,LOC107737914,LOC107549458,LOC107673038,LOC107750018 coding upstream 51705 13177525 ~ 13200626 (+)
LOC122360763 LOC107692560,LOC107750015,LOC107549466,LOC107737920,LOC107673047,LOC107598411 coding downstream 751 13262008 ~ 13269125 (+)
si:dkeyp-69b9.3 LOC107750016,LOC107737921,LOC107549467,LOC107673045,LOC107692576 coding downstream 14475 13275732 ~ 13291164 (+)
LOC122360375 prkcg,LOC107672987,LOC107598406,LOC107724902,LOC107549469,LOC100149482,LOC108437450,LOC107744308,LOC108276343,LOC107549470,LOC107692563,LOC107672989,LOC108437484,LOC102194125,LOC102306909,LOC100699493 coding downstream 67309 13328566 ~ 13433541 (+)
cacng7b cacng7b,LOC107549472,LOC107598394,LOC107672975,LOC107724890,LOC108437486,LOC108259712 coding downstream 174142 13435399 ~ 13446864 (+)
cacng8b cacng8b,LOC107598392,LOC107724881,LOC107692566,LOC107549473,LOC105894622,LOC105934996 coding downstream 188729 13449986 ~ 13471688 (+)
G111993 NA non-coding upstream 91383 13158802 ~ 13160948 (+)
G111998 NA non-coding upstream 105910 13141213 ~ 13146421 (+)
G111987 LOC107692542,LOC107596619 non-coding upstream 145177 13106286 ~ 13107154 (+)
G111978 NA non-coding upstream 149103 13066293 ~ 13103228 (+)
G111822 NA non-coding upstream 651237 12598914 ~ 12601094 (+)
G112011 NA non-coding downstream 8621 13269878 ~ 13270193 (+)
G112006 NA non-coding downstream 43325 13304582 ~ 13308763 (+)
G112046 NA non-coding downstream 275528 13536785 ~ 13543333 (+)
LOC122361042 LOC107724977,LOC107692585,LOC107672983,LOC107549448,LOC107598400,LOC107744312 non-coding downstream 285784 13547041 ~ 13552978 (+)
G112066 NA non-coding downstream 415763 13677020 ~ 13679008 (+)
nbeal2 nbeal2,LOC107596634,LOC107752840,LOC107685597,LOC107743212,LOC107673027,LOC107581539 other upstream 695973 12500071 ~ 12556358 (+)
LOC122359987 LOC107685557 other upstream 775823 12474517 ~ 12476508 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other upstream 861546 12379703 ~ 12390785 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other upstream 1114485 12106111 ~ 12137846 (+)
LOC122359964 pde11al,LOC107743218,LOC107684552,LOC103364058,LOC107685581,LOC107596730,LOC107550795,LOC107744711,LOC108441531 other upstream 1710092 11525296 ~ 11542239 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other downstream 269912 13531169 ~ 13544412 (+)
LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 other downstream 345350 13606607 ~ 13609407 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other downstream 349992 13611249 ~ 13619347 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other downstream 603364 13864621 ~ 13867229 (+)
LOC122360840 LOC107582135 other downstream 2017787 15279044 ~ 15282980 (+)

Expression


Co-expression Network