LOC122360452 (cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780)


Basic Information

Item Value
gene id LOC122360452
gene name cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13606607 ~ 13609407 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU165380
CTTCGACGTCCCATAATTCAGTGCGCTCATAAAGTCTTTCGAGAGGACGTTACGATAAGGACACAGCTAGAGACAGACCCATTATCTTTGACTGAAGATGGCTGATGTTATTGAGGACAAGATGAAGAACTACAGAACGGCTCCGTTCGATGCCCGTTTTCCAAATACTAACCAGACAAGAAACTGTTTCCAGAATTACCTTGactTCCACAGGTGTAATAAGGCTTTGTCAAGCAAAGGCCAGGACACTTCTCCCTGTGAATGGTATCAGAGAGTCTACAACAGCCTGTGTCCGATGAGCTGGGTGGAGAAGTGGGATGGGCAGATTGACGATGGAAGCTTCCCTGGAAAGATCTAAACGATCACCGTTACTTTAAATTTAAGAGCCCCCAACCTTTTGTAGAGTACCTCATAATGTTATATGATCTTGTCTTAGTTATTGGTTTGCCTCCTGAAGGGTGAAAGGTCGTTCAGAGTGGGCTTTGGAAAGTCCTGCATAATCATTGATCTTGGTGTCACTCTACATCCTActgttgcaaataaaataaaaaacgcaCAATTTCATCTAAAC
>TU165381
CTTCGACGTCCCATAATTCAGTGCGCTCATAAAGTCTTTCGAGAGGACGTTACGATAAGGACACAGCTAGAGACAGACCCATTATCTTTGACTGAAGATGGCTGATGTTATTGAGGACAAGATGAAGAACTACAGAACGGCTCCGTTCGATGCCCGTTTTCCAAATACTAACCAGACAAGAAACTGTTTCCAGAATTACCTTGactTCCACAGGTGTAATAAGGCTTTGTCAAGCAAAGGCCAGGACACTTCTCCCTGTGAATGGTATCAGAGAGTCTACAACAGCCTGTGTCCGATGAGCTGGGTGGAGAAGTGGGATGGGCAGATTGACGATGGAAGCTTCCCTGGAAAGATCTAAACGATCACCGTTACTTTAAATTTAAGAGCCCCCAACCTTTTGTAGAGTACCTCATAATGTTATATGATCTTGTCTTAGTTATTGGTTTGCCTCCTGAAGGGTGAAAGGTCGTTCAGAGTGGGCTTTGGAAAGTCCTGCATAATCATTGATCTTGGTGTCACTCTACATCCTActgttgcaaataaaataaaaaacgcaCAATTTCATCTAAACTGCTTTGTGTTTGATTTACTAccaattatatatgtgtgtgtttgtgtgactaCAAATAGTCCACATCATTAA
>XM_043261069.1
CCTTCGCTTATCCTGCTCTACTTCGACGTCCCATAATTCAGTGCGCTCATAAAGTCTTTCGAGAGGACGTTACGATAAGGACACAGCTAGAGACAGACCCATTATCTTTGACTGAAGATGGCTGATGTTATTGAGGACAAGATGAAGAACTACAGAACGGCTCCGTTCGATGCCCGTTTTCCAAATACTAACCAGACAAGAAACTGTTTCCAGAATTACCTTGactTCCACAGGTGTAATAAGGCTTTGTCAAGCAAAGGCCAGGACACTTCTCCCTGTGAATGGTATCAGAGAGTCTACAACAGCCTGTGTCCGATGAGCTGGGTGGAGAAGTGGGATGGGCAGATTGACGATGGAAGCTTCCCTGGAAAGATCTAAACGATCACCGTTACTTTAAATTTAAGAGCCCCCAACCTTTTGTAGAGTACCTCATAATGTTATATGATCTTGTCTTAGTTATTGGTTTGCCTCCTGAAGGGTGAAAGGTCGTTCAGAGTGGGCTTTGGAAAGTCCTGCATAATCATTGATCTTGGTGTCACTCTACATCCTActgttgcaaataaaataaaaaacgcaCAATTTCATCTAAA

Function

symbol description
cox6b2 Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrion. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX6B1 (cytochrome c oxidase subunit 6B1) and COX6B2 (cytochrome c oxidase subunit 6B2).

NR:

description
PREDICTED: cytochrome c oxidase subunit 6B1-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165380 False 571 TUCP 0.43 4 13606627 13609335
TU165381 True 643 TUCP 0.42 4 13606627 13609407
XM_043261069.1 False 590 mRNA 0.43 4 13606607 13609334

Neighbor

gene id symbol gene type direction distance location
sbk3 sbk3,LOC107692583,LOC107724984,LOC107549477,LOC107598393,LOC107672974,LOC107744295 coding upstream 80738 13519717 ~ 13525869 (+)
foxj2 LOC107549475,LOC107692570,LOC107724837,LOC107744299,LOC107672970 coding upstream 100029 13498815 ~ 13506578 (+)
isoc2 isoc2 coding upstream 108477 13494746 ~ 13498130 (+)
cacng8b cacng8b,LOC107598392,LOC107724881,LOC107692566,LOC107549473,LOC105894622,LOC105934996 coding upstream 134919 13449986 ~ 13471688 (+)
cacng7b cacng7b,LOC107549472,LOC107598394,LOC107672975,LOC107724890,LOC108437486,LOC108259712 coding upstream 159743 13435399 ~ 13446864 (+)
ephb6 ephb6,LOC107724759,LOC107672963,LOC107744289,LOC107700205,LOC108432347,LOC108270687,LOC106576842,LOC107549482 coding downstream 11068 13620475 ~ 13665213 (+)
trpv6 LOC107549483,LOC107700202,LOC107744287,LOC107672966,LOC107598386,LOC107724748 coding downstream 58627 13668034 ~ 13673621 (+)
leng8 leng8,LOC107744285,LOC107672965,LOC107724921,LOC107549486,LOC107700201 coding downstream 73551 13682958 ~ 13693942 (+)
LOC122361372 NA coding downstream 86361 13695768 ~ 13695823 (+)
LOC122361369 NA coding downstream 87010 13696417 ~ 13696470 (+)
LOC122361042 LOC107724977,LOC107692585,LOC107672983,LOC107549448,LOC107598400,LOC107744312 non-coding upstream 53629 13547041 ~ 13552978 (+)
G112046 NA non-coding upstream 63274 13536785 ~ 13543333 (+)
G112006 NA non-coding upstream 297844 13304582 ~ 13308763 (+)
G112011 NA non-coding upstream 336414 13269878 ~ 13270193 (+)
G111993 NA non-coding upstream 445659 13158802 ~ 13160948 (+)
G112066 NA non-coding downstream 67613 13677020 ~ 13679008 (+)
G112065 NA non-coding downstream 84810 13694217 ~ 13701775 (+)
G112078 NA non-coding downstream 107054 13716461 ~ 13789090 (+)
G112123 NA non-coding downstream 388834 13998241 ~ 13999916 (+)
G112155 NA non-coding downstream 447849 14057256 ~ 14057650 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other upstream 62195 13531169 ~ 13544412 (+)
nbeal2 nbeal2,LOC107596634,LOC107752840,LOC107685597,LOC107743212,LOC107673027,LOC107581539 other upstream 1050249 12500071 ~ 12556358 (+)
LOC122359987 LOC107685557 other upstream 1130099 12474517 ~ 12476508 (+)
LOC122360650 LOC107685555,LOC107743206,LOC107596715 other upstream 1215822 12379703 ~ 12390785 (+)
LOC122360824 dnah11,dnah9,LOC107596639,LOC107685550,LOC107743202,LOC107740597,LOC107677540 other upstream 1468761 12106111 ~ 12137846 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other downstream 1842 13611249 ~ 13619347 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other downstream 255214 13864621 ~ 13867229 (+)
LOC122360840 LOC107582135 other downstream 1669637 15279044 ~ 15282980 (+)
LOC122360316 LOC107699540,LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537 other downstream 1774200 15383607 ~ 15388028 (+)
apoc1 NA other downstream 1800074 15409481 ~ 15411012 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_05325805_05330265 COX6B2 misc CI01000016 null 5325519 ~ 5332874 (-)
rainbow trout (Oncorhynchus mykiss) G99566 NA non-coding NC_048565.1 CM023219.2 89866473 ~ 89867725 (-)