LOC122360316 (LOC107699540,LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537)


Basic Information

Item Value
gene id LOC122360316
gene name LOC107699540,LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15383607 ~ 15388028 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU166556
GCAGTAACTCGTGGGTCTGGTGCTTTCAAATGACGTCCAAACCTGTACATCTTGGGACAAAGAGTCTGTAGACACAAAATAACTAGATATACACATCCACTggcaatattaaaacaatgctatataaatacagcTATGAAAGAGCAATCACCACACTTACTCTTCACTCTGGACAGGGTCCAATTCAATCATACTGACAAAGgcaaaaacagaaaaccatGAAGGTTGTTGTGGTTCTTGTGCTGGCTGTTTTTACAGATTGCAAATCCAATTTATCTAATGCAGAGAAGCCCAATCCACATCTTGAACATTTACTAAATGCGTTTTGGGAGTACATTGCCCAGGCAGTACATCCCAGTAATGAAACATCACATGTGACAAGTCCATCCAAGCTGGAACAGGAAGTCAATCTTACACAGGCCCCTACATCTGAAGATCAGATGACTCAAATCAACAAAGAGGCTGAAGTGTTGAGAGAGCGTTTGGAAAAGGACCTGAACATCATAAGAGACAAACTGGAGCCCTATGCTGACAACCTGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGACGGCCATGGCTCCGTATGCTGACAACCTGGACTCTGAGACCCTGAAGGCCACTCTGCTCCAGAAGAGCGAGGAGCTGAAAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGCTCAGCTGGAGCCCTACACTGCTGAGATCAAGGATAATATGAGCCAATATCTGAgggaaatgcaaatgtattttgctGCATCACCTCGAGATCC
>XM_043260814.1
GTGGAGCAGTGACAGCAAGGCACTACCCACTGGACTTTGGGTTTCCACAACGGCAATCACCTCCCCATAAGATATAAATACAGATGTGAAACAGCCACCTTCACACTTGTTCTTCAGACAGGACAGCGTCAATCAAAACACACGGACACAGACCCAAATTAAAGACCATGAAGGTTTTTGTGGTGTTCGCACTTGCTGTATTTACAGGTTGCCAGGCCAACCTCTTCTATGCTGATGAGCCCAAGCCACAGCTGGAGCAGCTGACAGATGCTTTCTGGAGCTATGTTGCGAAGGCAACACAAACAGCAGAGGAAACCGTCAAGATGATCAGGTCTTCCCAACTGGGACAGGAAGTCAATACCAAACTGACCCAGGGTGCTGATATGGCCAGCGAATACGCCGTCACCATCAAGAAGCAGATGGATCCTCTGACTGAAGAGCTAATGACCAAAATCACCAAGGAAACTGAAGTGTTGAGGGAGCGTCTGGGCCAGGACCTGATCGGCGTGAGAGACAAACTGGAGCCCTACGCTGACAACCTGAAAAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGACGGCCATGGCTCCATATGCTGACAACCTGGACTCTGAGACCCTGAAGGCCACTCTGCTCCAGAAGAGCGAGGAGCTGAAAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGCTCAGCTGGAGCCCTACACTGCTGAGATCAAGGAGAAAGTGGATCAACATCTGCAGGAGTTCCAGAAGACCGTGACGCCTCTGACTGAGGACCTCCAGATTCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTCACACCCTACGCTGAAGACCTAAAGGAGAAACTGGATCCCTACGCTCAGGACCTGCAGGCCCAGCTCACCTCCCTGTACGAGTCCTTCGTCAAGAGAAATTAGACGCATCAATGACCTCTTCTGTCTCTAACAGAACTACAGAACTCATGAACTTCAAAATTTGACATATTTGATCTTTGTTTTCCTCCATGCACTCATCCTATACAATGCCAAAAAAGccaaaagtaaaacatttgataaagtcttattaattaaaatctgCAATATCCAATAACTTTTGCATttgcaaaatctttttttctgtaaagatggatatttattatatccaccttaaaaaagaaagatttttgaGAAGAATGTGTGATATTTGTGTAATATAACTGTTTGTAAGTTTACAAATGCcacattttgtcttattttaatgatgaataaagtattatttatttaca
>XM_043260815.1
ATAACTAGATATACACATCCACTggcaatattaaaacaatgctatataaatacagcTATGAAAGAGCAATCACCACACTTACTCTTCACTCTGGACAGGGTCCAATTCAATCATACTGACAAAGgcaaaaacagaaaaccatGAAGGTTGTTGTGGTTCTTGTGCTGGCTGTTTTTACAGATTGCAAATCCAATTTATCTAATGCAGAGAAGCCCAATCCACATCTTGAACATTTACTAAATGCGTTTTGGGAGTACATTGCCCAGGCAGTACATCCCAGTAATGAAACATCACATGTGACAAGTCCATCCAAGCTGGAACAGGAAGTCAATCTTACACAGGCCCCTACATCTGAAGATCAGATGACTCAAATCAACAAAGAGGCTGAAGTGTTGAGAGAGCGTTTGGAAAAGGACCTGAACATCATAAGAGACAAACTGGAGCCCTATGCTGACAACCTGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGACGGCCATGGCTCCGTATGCTGACAACCTGGACTCTGAGACCCTGAAGGCCACTCTGCTCCAGAAGAGCGAGGAGCTGAAAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGCTCAGCTGGAGCCCTACACTGCTGAGATCAAGGAGAAAGTGGATCAACATCTGCAGGAGTTCCAGAAGACCGTGACGCCTCTGACTGAGGACCTCCAGATTCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTCACACCCTACGCTGAAGACCTAAAGGAGAAACTGGATCCCTACGCTCAGGACCTGCAGGCCCAGCTCACCTCCCTGTACGAGTCCTTCGTCAAGAGAAATTAGACGCATCAATGACCTCTTCTGTCTCTAACAGAACTACAGAACTCATGAACTTCAAAATTTGACATATTTGATCTTTGTTTTCCTCCATGCACTCATCCTATACAATGCCAAAAAAGccaaaagtaaaacatttgataaagtcttattaattaaaatctgCAATATCCAATAACTTTTGCATttgcaaaatctttttttctgtaaagatggatatttattatatccaccttaaaaaagaaagatttttgaGAAGAATGTGTGATATTTGTGTAATATAACTGTTTGTAAGTTTACAAATGCcacattttgtcttattttaatgatgaataaagtattatttatttaca

Function

NR:

description
PREDICTED: apolipoprotein A-I-like

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K08760 APOA4; apolipoprotein A-IV

RNA

RNA id representative length rna type GC content exon number start site end site
TU166556 False 784 TUCP 0.45 4 15383607 15384929
XM_043260814.1 True 1282 mRNA 0.45 4 15386476 15388028
XM_043260815.1 False 1201 mRNA 0.42 5 15383685 15388028

Neighbor

gene id symbol gene type direction distance location
LOC122359883 LOC107596479,LOC107714701,LOC107657652,LOC107723545,LOC107582169 coding upstream 546 15381396 ~ 15383061 (+)
gtpbp10 gtpbp10,LOC107714660 coding upstream 31997 15343716 ~ 15351610 (+)
nbn LOC107714684,LOC107699542,LOC107595095,LOC107723492,LOC107582084,LOC107657590 coding upstream 50916 15321360 ~ 15332691 (+)
fam189b si:dkey-7f3.9,LOC107714688,LOC107699544,LOC107595084,LOC107582082,LOC107723493,LOC107657649 coding upstream 62634 15312918 ~ 15320973 (+)
rab13 rab13,LOC107723501,LOC107714709,LOC107595065,LOC107582080,LOC107699545 coding upstream 70999 15307760 ~ 15312608 (+)
LOC122360315 LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537 coding downstream 7399 15395427 ~ 15396885 (+)
apoeb apoeb,LOC107714700,LOC107595129,LOC107723536,LOC107699536,LOC107657653 coding downstream 14407 15402435 ~ 15404616 (+)
apoa2 NA coding downstream 25941 15413969 ~ 15415684 (+)
apoc2 LOC107582090,LOC107657613,LOC107699533,LOC107595154,LOC107714719 coding downstream 30075 15418103 ~ 15420422 (+)
LOC122360844 NA coding downstream 109306 15497334 ~ 15502997 (+)
G112775 NA non-coding upstream 77601 15199638 ~ 15306006 (+)
LOC122360506 NA non-coding upstream 349118 15014554 ~ 15034489 (+)
LOC122360138 LOC107751180 non-coding upstream 553061 14829927 ~ 14830546 (+)
G112699 NA non-coding upstream 567863 14815478 ~ 14815744 (+)
LOC122360213 NA non-coding upstream 580591 14802532 ~ 14803016 (+)
G112809 NA non-coding downstream 42820 15430848 ~ 15433284 (+)
G112814 NA non-coding downstream 52803 15440831 ~ 15441578 (+)
G112818 NA non-coding downstream 80453 15468481 ~ 15507655 (+)
LOC122360481 NA non-coding downstream 142542 15530570 ~ 15533701 (+)
G112841 NA non-coding downstream 241115 15629143 ~ 15629458 (+)
LOC122360840 LOC107582135 other upstream 100627 15279044 ~ 15282980 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other upstream 1516378 13864621 ~ 13867229 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other upstream 1764260 13611249 ~ 13619347 (+)
LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 other upstream 1774200 13606607 ~ 13609407 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other upstream 1839195 13531169 ~ 13544412 (+)
apoc1 NA other downstream 21453 15409481 ~ 15411012 (+)
apoc4 NA other downstream 23780 15411808 ~ 15412841 (+)
G112811 LOC107657655,LOC107582137,LOC107723516 other downstream 47744 15435772 ~ 15442077 (+)
G112816 LOC107595169,LOC107699531,LOC107714691,LOC107723516,LOC107657655 other downstream 56631 15444659 ~ 15476201 (+)
LOC122360429 LOC107714724,LOC107699479,LOC107595242,LOC107657660,LOC107723414 other downstream 260243 15648271 ~ 15659613 (+)

Expression


Co-expression Network