gtpbp10 (gtpbp10,LOC107714660)


Basic Information

Item Value
gene id gtpbp10
gene name gtpbp10,LOC107714660
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15343716 ~ 15351610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262001.1
TATGTTTCCGGAAGCGCACACGTGTTTGGTTCTTCACTTTAACGGTGCGAAGTCAGTAACGTTGTAACTGAAAAACGGATAGATTTAATGCCACTTGATTACAATCTCTACGTTGGGGAGTTATTTCGGCATGGTCTGGATAAGCAGAGTTTGTTTCCGGAAGtatggCAACTTTGTGGATAATATACGGCTTTATGTGAGGGGTGGGAGTGGAGGAATGGGTTTGCCCCGTTTAGGGGGACATGGAGGAAACGGCGGAGATGTTTTGGTGGTGGCCAAAAAAGACATTACATTGAAGCAAATCAAGGACAAGCACCCTAGCAAACGATTCGCTGCAGGTGCTGGTTCAAACAGCAGTATTCAAGCTCTGAGAGGGGCTAACGGAGAGGACACCCAGGTCTTTGCACCTGTTGGGATCAGTGTTACAACGGATAATGGCAGAATCTTAGGTGAGCTGAACTGTGAAGGAGACAGACTTTTGGTGGCTAAAGGGGGTCGTGGTGGCACTCTTCACTCCGGGTTCTTACCCAGTAAAGGTCAAAATAGACATATACGTCTGGACCTTAAACTCATTGCAGATTTTGGACTTGTAGGgTTTCCTAATGCAGGAAAATCCTCCTTGCTGACTGCCTTGTCTCACGCCAAACCAAGGATCGCCAACTACCCCTTTACAACTTTAAGACCTGAAATTGGAAAGGTTATGTATGATGACCATAACCAGGTTTCAGTAGCAGACTTACCAGGACTCATTGAAGGTGCTCACATGAACAAAGGCATGGGACACAAATTCCTCAAGCATGTGGAGAGAACCAAGCAGCTCATGTTTGTGGTCGACATCAGTGGGTTCCAGCTGGCTAGTAAAACTCCAGTGAGGTCTGCGTTTGAAACCGTGGTTCTTTTAACCAAGGAACTGGAGTTGTATAAGGAGGAGCTGTTAGGCAAGCCAGCAATCCTGGTCATAAATAAAATGGACCTCCCCGAGGCTCAGGGTCATCTCAGAGAACTGGAAGCTCACTTGGAGAACCAGGAAGAATCAAGCCGTCTTTTCCCTAAGGATGTCATCCCTAAAAGCCTAATGCATTTCACCCACATCATCCCAGTTTCAGCCACAACTGGCCTTGGTCTGCCCTTGCTCAAGTCCCTCATCCGCCAATCACTTGAGGAGCAGGATGCCATAGAAACTGAGGGTCAGCGCCATGAGAGGCTACTCAAGTTAAGAAGGGAGATTCCCAAACCAACTATACCCAACTGGGGGTTTCCTCAACCGACCTGAGCTCCCACATACAGGTTACAGTATAGGCAACCCATAAATAATCATGTCAAACACACAATATGCGTGAAAGAACATAAACGGCACATATTATTGCTTGACTTTATAGTCTATTTTATAGACAATTTTCTGTGCCCtatatgtgtttaaatgttgCATTCTGACACCAAAATGCTGACCTTTGTGTCCGGGTAAGCTTTCATGTAACGCATTGCTTGAAGTTGGTTTTAGCTGCTCTCCCAATCTGATCATGCTGGTCTGGGTTGCTGGTTTTAAAGGCGTTTTGGTAACTTGTCAGCTGGTCCTACCATCAGAAGAGGGTGGGAGACCAGATTAAAAACTGGCcattacaacaaaataatatttttcccCGCACAGTAAGATGGCTAAAATGCTCtctttgaaaatgattaatttctataatttataaaaaagtgAGCACCTTTTATAGCTAGTCCTTGTTCTTGTTCAGTTGGCCTGTTTTTCAATAGAATCAGAACTCTACTGCCCTCTGCTGATTTTTTTTGccactgtttgtgttttataccttcattgatttgtttaatgCTAGATTATTCTGTACCAGAGTAAAATCAGGTGAAACGCTTGCAATGAAGCCAGGAATTATACGTTCAGACCTATCTTTTGTCTGTCATAaatgttaagttttttttgcaGACAAGTCACATCTCTACCAACTGCCACTAGATGCTACTAGAACCGTGCAGATAGTTTGCAGGCCAAACTGGAGCATGTAGGCTACTTTTCATGATAAACTCAAACAGTGGGCAGTTTCAGAGGTTGTACATGCTTTGATCTTTGTATAATTTGCATGTGTTATTAAATCCTTTCAACACTTAGAAAAGCTAA

Function

symbol description
gtpbp10 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be active in mitochondrion. Orthologous to human GTPBP10 (GTP binding protein 10).

NR:

description
PREDICTED: GTP-binding protein 10-like

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005730 nucleolus cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262001.1 True 2140 mRNA 0.44 10 15343716 15351610

Neighbor

gene id symbol gene type direction distance location
nbn LOC107714684,LOC107699542,LOC107595095,LOC107723492,LOC107582084,LOC107657590 coding upstream 11025 15321360 ~ 15332691 (+)
fam189b si:dkey-7f3.9,LOC107714688,LOC107699544,LOC107595084,LOC107582082,LOC107723493,LOC107657649 coding upstream 22743 15312918 ~ 15320973 (+)
rab13 rab13,LOC107723501,LOC107714709,LOC107595065,LOC107582080,LOC107699545 coding upstream 31108 15307760 ~ 15312608 (+)
kcnn3 kcnn3,LOC107723559,LOC107657645,LOC107699550,LOC107595057,LOC107714686,LOC108280396,LOC107379598 coding upstream 66863 15230660 ~ 15276853 (+)
adar LOC107595045,LOC107714681,LOC107699549,LOC107582078,LOC107657642 coding upstream 121446 15206171 ~ 15222270 (+)
LOC122359883 LOC107596479,LOC107714701,LOC107657652,LOC107723545,LOC107582169 coding downstream 29786 15381396 ~ 15383061 (+)
LOC122360315 LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537 coding downstream 43817 15395427 ~ 15396885 (+)
apoeb apoeb,LOC107714700,LOC107595129,LOC107723536,LOC107699536,LOC107657653 coding downstream 50825 15402435 ~ 15404616 (+)
apoa2 NA coding downstream 62359 15413969 ~ 15415684 (+)
apoc2 LOC107582090,LOC107657613,LOC107699533,LOC107595154,LOC107714719 coding downstream 66493 15418103 ~ 15420422 (+)
G112775 NA non-coding upstream 37710 15199638 ~ 15306006 (+)
LOC122360506 NA non-coding upstream 309227 15014554 ~ 15034489 (+)
LOC122360138 LOC107751180 non-coding upstream 513170 14829927 ~ 14830546 (+)
G112699 NA non-coding upstream 527972 14815478 ~ 14815744 (+)
LOC122360213 NA non-coding upstream 540700 14802532 ~ 14803016 (+)
G112809 NA non-coding downstream 79238 15430848 ~ 15433284 (+)
G112814 NA non-coding downstream 89221 15440831 ~ 15441578 (+)
G112818 NA non-coding downstream 116871 15468481 ~ 15507655 (+)
LOC122360481 NA non-coding downstream 178960 15530570 ~ 15533701 (+)
G112841 NA non-coding downstream 277533 15629143 ~ 15629458 (+)
LOC122360840 LOC107582135 other upstream 60736 15279044 ~ 15282980 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other upstream 1476487 13864621 ~ 13867229 (+)
slc2a3b LOC107692573,LOC107724776,LOC107672969,LOC107744290,LOC107598389 other upstream 1724369 13611249 ~ 13619347 (+)
LOC122360452 cox6b2,LOC107744291,LOC107598404,LOC107692571,LOC107549480,LOC108432349,LOC108270780 other upstream 1734309 13606607 ~ 13609407 (+)
mfap5 mfap5,LOC107692584,LOC107549447,LOC107672984,LOC107598402,LOC107744296,LOC107724932 other upstream 1799304 13531169 ~ 13544412 (+)
LOC122360316 LOC107699540,LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537 other downstream 31997 15383607 ~ 15388028 (+)
apoc1 NA other downstream 57871 15409481 ~ 15411012 (+)
apoc4 NA other downstream 60198 15411808 ~ 15412841 (+)
G112811 LOC107657655,LOC107582137,LOC107723516 other downstream 84162 15435772 ~ 15442077 (+)
G112816 LOC107595169,LOC107699531,LOC107714691,LOC107723516,LOC107657655 other downstream 93049 15444659 ~ 15476201 (+)

Expression


Co-expression Network