apoc2 (LOC107582090,LOC107657613,LOC107699533,LOC107595154,LOC107714719)


Basic Information

Item Value
gene id apoc2
gene name LOC107582090,LOC107657613,LOC107699533,LOC107595154,LOC107714719
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15418103 ~ 15420422 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259986.1
ataaCATTTATCTGAGTAGTTGCACTTTGGCACTTGAGTTATCAGGTCATCTGTACCCATATATAAGATAGGCCAAAGAGTTTTTGCCGCTAACCCATCTGACACACTTTCCGCAGAGGAGACACTAGATCCCTGCCATTATGAACAAGCTGCTGGTTATCACCGTCGTCATCACTTTCCTTGCTCTGGGAGCGGAGAGCTTCCGTGTGCCCAGGCAAGCTGAAGATGAGAAGGGAACCGTTGCCACTGTAGTGGACACACTTAGGTCCTACTACGACCAGAGCGTTGACACTGCCAGCGGCTACGTTGAAACCATCAAGGGCTACAAGCTGGATGAGAAAGCCAAGAACCTGTACGAGGACACAGTTCGTGCTGTCAGCACCTACGCCGGCATCTTCAACGACCAGCTATACCACATTTTGTACCCTCAAGACAGCTCTTAAATCACATTGTATCACACATCAACAAAACTCCATCTCTTTCTGGTCCTGAGTCCATCATCACGCTGGAACTACAATCACATGCATCTCAGAAAAAGATGGCACTGAGCTGAAAATATGACTGTTGAACTCCAAAGGCCTGTTACCTTCGCCCTGtcaaaaatactgcaaaagCACGAGCACCCTGACACACATCAGTGGATAATTATGATGTGAAGTTCTGTGGTAAAATCGGGTATAATGCTCAACCACAATCTGTTTTTGGATGAAGATCAGAGACTCTTTGCTGCTGACTGTTACCTGGCGCCCTCTATCGTACATCCAGGTTAAAAAAGAATCATCGACCGTTTCATTGTGGTTTATCTgtacagatgaaaaaaaatccttgtaTTATATCAACATTTAGTGGTTCTTTGTCCATGAGCATTAACAAATAGCAATAAAACTCCACATTTGTAGAAAA

Function

NR:

description
apolipoprotein CII isoform X1

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259986.1 True 903 mRNA 0.44 4 15418103 15420422

Neighbor

gene id symbol gene type direction distance location
apoa2 NA coding upstream 2419 15413969 ~ 15415684 (+)
apoeb apoeb,LOC107714700,LOC107595129,LOC107723536,LOC107699536,LOC107657653 coding upstream 13487 15402435 ~ 15404616 (+)
LOC122360315 LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537 coding upstream 21218 15395427 ~ 15396885 (+)
LOC122359883 LOC107596479,LOC107714701,LOC107657652,LOC107723545,LOC107582169 coding upstream 35042 15381396 ~ 15383061 (+)
gtpbp10 gtpbp10,LOC107714660 coding upstream 66493 15343716 ~ 15351610 (+)
LOC122360844 NA coding downstream 76912 15497334 ~ 15502997 (+)
ywhabl ywhabl,LOC107595301,LOC107570839,LOC107723438,LOC108429958,LOC108265441,LOC105896388 coding downstream 287129 15707551 ~ 15717886 (+)
smg9 smg9,LOC107595308,LOC107699520,LOC107570844,LOC107657666 coding downstream 305317 15725739 ~ 15730291 (+)
si:dkey-79d12.4 NA coding downstream 310273 15730695 ~ 15735708 (+)
LOC122360120 LOC107596518 coding downstream 368160 15788582 ~ 15797155 (+)
G112775 NA non-coding upstream 112097 15199638 ~ 15306006 (+)
LOC122360506 NA non-coding upstream 383614 15014554 ~ 15034489 (+)
LOC122360138 LOC107751180 non-coding upstream 587557 14829927 ~ 14830546 (+)
G112699 NA non-coding upstream 602359 14815478 ~ 14815744 (+)
LOC122360213 NA non-coding upstream 615087 14802532 ~ 14803016 (+)
G112809 NA non-coding downstream 10426 15430848 ~ 15433284 (+)
G112814 NA non-coding downstream 20409 15440831 ~ 15441578 (+)
G112818 NA non-coding downstream 48059 15468481 ~ 15507655 (+)
LOC122360481 NA non-coding downstream 110148 15530570 ~ 15533701 (+)
G112841 NA non-coding downstream 208721 15629143 ~ 15629458 (+)
apoc4 NA other upstream 5262 15411808 ~ 15412841 (+)
apoc1 NA other upstream 7091 15409481 ~ 15411012 (+)
LOC122360316 LOC107699540,LOC107723413,LOC107657612,LOC107714702,LOC107723544,LOC107714703,LOC107595112,LOC107596500,LOC107699537 other upstream 30075 15383607 ~ 15388028 (+)
LOC122360840 LOC107582135 other upstream 135123 15279044 ~ 15282980 (+)
zgc:158701 LOC107598451,LOC107671172,LOC107755974 other upstream 1550874 13864621 ~ 13867229 (+)
G112811 LOC107657655,LOC107582137,LOC107723516 other downstream 15350 15435772 ~ 15442077 (+)
G112816 LOC107595169,LOC107699531,LOC107714691,LOC107723516,LOC107657655 other downstream 24237 15444659 ~ 15476201 (+)
LOC122360429 LOC107714724,LOC107699479,LOC107595242,LOC107657660,LOC107723414 other downstream 227849 15648271 ~ 15659613 (+)
si:dkey-56f14.7 si:dkey-56f14.7,LOC107699525,LOC107714704,LOC107595251,LOC107570835 other downstream 256743 15677165 ~ 15699938 (+)
hcst NA other downstream 499653 15920075 ~ 15923797 (+)

Expression


Co-expression Network