LOC122360640


Basic Information

Item Value
gene id LOC122360640
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 9893516 ~ 9896085 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252824.1
GTCTCCTTGTGCCTGGCTGGCTGTTTCCCCTTTCTTTTCTCGGATCTCTTTGTGCATTATTTGGCCTTGGAGTTGAAGGATCGGATCACATATGGATTCAGTGGAAACTACTGGACTTCAGGATCTATTGATGAATAACAATGCTCGCATGGATTGTCAGGAGGAGCAGATTCTGGCGATTGGTAACGCAGGTTTCTGAGCTCACCACCCAAATAAAAATAGATCGCCCACTGCGCCAGCCACACCGCCTGCTCCCCCAGTTCCAGTAGACAATGCAACCTAGGCCTCTGACGTTTGCTACTGAAGAGTCCAGAGTGGCTTTGGTGTTGATACTGCTGTCAGACATCCTTGATGTTCCTTATTCCACTCTTTTGCACAAGATGGGTCGTGAAGTGGCAGGTCGCAAGACTAAGCGAATGCTAGTCAATCTCCAGCAAGAAAATAAGACTGTCTCCAACTACTAAATAGAGTTCTGGACTCTACGAAAGAGTGCAAATGGAATAAGGAGGCACAGTGGGACATGTTCCTGCATGGGTTGGCTGATCATATCCAGAGGGAGATATTTACTGTGGAACTACCAGCTGATCTGAATGGGCTCATAGACTTAGTCTGTTGCAAGCTGAGTTTTGAGCTTCCTCCAGTGGTATGATCAGTCTTCTGCCAAAGGGGCCAACCCATGCAGGTGGGGAGAGCTTGGCTTTCTCTTGAGAAGAGAGAATGCCGTAGGATGAGAGATCTTCGTATTTATTGTGGGGCAGCGGGACATTTTCTGGGTGAATGCCAAGTAAAAGGGTAAGCCTGACAGTAGGTCTGAGGCTGCTGTCAGGTGAagtcttgctgaataaaacctTGTCTAATACTCTCCTCCTGGTAAGACTGCAATGGGCATCCAGAAGTCACAAGTGCAAGGCGCTATTGGACTCCGGAGAGGaaggtaattttttttggacattgCTAGACACCTTTGTATTCCTATGGTCCTGTTCAATCACAAGAGCTGTTAAGAGCCTTTGTTAAGGCTCTTAATGGACAGTCTCTGCCCTGTGTTACGCACTCCACCACTCTCATGAGACTCGTCACGTCTGGCAATCGCACAGACTCTCCTCTAGCACCGGTTGTGTTGGGTCATCCTTGGCTCACTCAACATAATCCTAAAATAGACTGGGGACAGAATTCAGTATATGCATGAGCGAATCATGCTATGCATGTCTTGTGTCTGCTTGTCCCTCTGTATCTTGTTCTTCATTCCAAACACCCGTTCTTCAATCATTCTCCAGAGGGGTTACCTTTTAGAACCTGCTCCGACATTGCGCTCAATTTCGTGTCTGCCCTCCCGCCTTCCCTGGGCAATACAGTTGTTTTGACTGTAGTGGACAGGTTCTTGAAGGTGGCTCATTTCATCCCCTTGCCCAAATTACATTCTGCCACCCTCAAACCAACTGCCAGACTGAGCGAGCCAACCAGGATGTGGAGAGGGTATTGCATTGTTTGGTGGCACAGAATCCCACTTCCTGGAGCCAACAACTCTCGTGGGTTGAGTAAACACATGACTTGTTACTAGTGTTGTCTACAGACCTCTTGCCTTTTGCATGTAATTTAGGTTACCAGCCACTCATTTCGTGGACCCATCTGCTCATGCTTTTGTTCAGAGATGCTGGAGAAGAGCCTGAGAGACTAAGGCTACGGCTTATCTTCACCAGTCGAAGTCTCTCGTCTACGTTGTGGGTCAAAAAGTATGGCTTTCTACTAAGAATATTCCACTCTGCCCCTTACATAATAAACTTGCTCCCAAATTCATTGTCCTGTTCCCTGTCCTTAGCCTAGTGGCAGTCCACCTTTCATTTCTGCAGTAATTTCAAATTCTAATACTTGGTGAACTGGGAAGGTTATGGTCCGGAGGAGAGAAGTTGGGTTCCTGCCAGGGACATATTGGATCATTTACTTATTGATGATTATAATCAATGGGTAAGATTGATGGAGATCGCCAGGAGGCACTCTTAGGAGAAGTGGTACTGTCACGGTTTATGGAGTCATAATGTCATCTGTCCACTGTCTCTATTGCTTGTGGGTGTGCCTGATTGCCGCAGCGAGCTAATCAGTCCCAGCTGTGGCTCATTTGCAGCACTATTTAAGGTGCGCTAATGTAGTCTTTGGTGTTTGTCTCCTTGTGCTTGGCTGGTTCTTTCTCCAGTGTCTTGGTTTCCTGTTTGGGTTCGCCTGGATTTCTCTGTGGATTATTTAGTATTGAAGTTAGCTGTTCATTGCATCCCTGCACTACTGAGTTAGTGAGATGTCCGTGAACCTTTTCCTCTCCACTTTAACTGTGTTGAATCTGTTCCAATAAACTATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252824.1 True 2352 lncRNA 0.47 3 9893516 9896085

Neighbor

gene id symbol gene type direction distance location
pomgnt2 LOC107732433,LOC107551215,LOC107657577,LOC107751881,LOC107601673,LOC107704096 coding upstream 20531 9860197 ~ 9872985 (+)
ano10a ano10,ano10a,LOC107657579,LOC107723075,LOC107751882,LOC107601655,LOC107704098 coding upstream 76582 9787477 ~ 9816934 (+)
cnot10 LOC107657584,LOC107751886,LOC107723079,LOC107704102 coding upstream 219220 9663556 ~ 9674296 (+)
trak1a trak1,LOC107657585,LOC107723078,LOC107751889,LOC107704104 coding upstream 323698 9534588 ~ 9569818 (+)
LOC122360804 NA coding upstream 581614 9310726 ~ 9311902 (+)
si:cabz01093077.1 NA coding downstream 182487 10078572 ~ 10079575 (+)
dnah5 dnah5,LOC107751901,LOC107664631,LOC107746973,LOC107684226,LOC106579813 coding downstream 299592 10195677 ~ 10284951 (+)
LOC122361033 NA coding downstream 432201 10328286 ~ 10331967 (+)
ca14 LOC107757442,LOC107566279,LOC107691873 coding downstream 528315 10424400 ~ 10458419 (+)
LOC122361027 LOC107566274,LOC107757437,LOC107697650 coding downstream 569188 10465273 ~ 10467230 (+)
G111031 NA non-coding upstream 175970 9690244 ~ 9717546 (+)
G111029 NA non-coding upstream 204044 9689001 ~ 9689472 (+)
G111028 NA non-coding upstream 212074 9678148 ~ 9681442 (+)
G110987 NA non-coding upstream 272234 9620971 ~ 9621282 (+)
G110983 NA non-coding upstream 435873 9457339 ~ 9457643 (+)
G111119 NA non-coding downstream 51266 9947351 ~ 9952364 (+)
G111152 LOC107746964,LOC107551210,LOC107684220 non-coding downstream 134530 10030615 ~ 10046364 (+)
G111163 NA non-coding downstream 201708 10097793 ~ 10098242 (+)
G111230 prpf3,LOC107566278,LOC107555801,LOC107572828,LOC107677690 non-coding downstream 499823 10395908 ~ 10397103 (+)
G111232 NA non-coding downstream 504184 10400269 ~ 10403040 (+)
ctnnb1 ctnnb1,LOC107570993,LOC107701997,LOC107751892,LOC107748497 other upstream 506125 9356432 ~ 9387391 (+)
LOC122360022 cpq,pgcp other upstream 661633 9192080 ~ 9231883 (+)
vamp1b zgc:92912,LOC107596691,LOC107656704,LOC107741978,LOC103044039,LOC105912972,LOC108268517,LOC108429010 other upstream 952904 8934051 ~ 8940612 (+)
tmem238a tmem238,LOC107685601 other upstream 1062813 8820556 ~ 8830703 (+)
G110713 LOC107685602 other upstream 1076680 8808707 ~ 8816836 (+)
G111122 NA other downstream 67020 9963105 ~ 9964386 (+)
G111161 LOC107746965,LOC107684222,LOC107551211 other downstream 177590 10073675 ~ 10074051 (+)
enpp2 enpp2,LOC107757440,LOC107697648,LOC107574906,LOC107745056,LOC107681346 other downstream 596949 10493034 ~ 10509575 (+)
LOC122361026 LOC107708300 other downstream 774872 10670957 ~ 10728460 (+)
LOC122360811 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 930518 10826603 ~ 10851438 (+)

Expression


Co-expression Network