CI01000001_01538233_01543680


Basic Information

Item Value
gene id CI01000001_01538233_01543680
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1538071 ~ 1543838 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01538233_01543680.mRNA
GTATATATGTAAGACTAGGCTATATTAAGGGTTCAATTAAACAAATGTTTGCTGAAGGCGTGCGATTTACGTCTCTTAATCCGTCCAGTTTTCCCTCCGAGTTAGCCTACTTTATACAAACGAAATCGAGACTGAAGAAGGACTGGAGGATTCGCTTTCACAATGAAAGCGCGGCATTTGTTAATAGTTTTATTGCTGGTGTCTAATATAACATTATCTTCAGGTTTTCTGGATATCCTCGCGGCTGCCGCATCTTATGTGGTTTACACATTTATTGAACGGGACGGTTTGCTGCCGTTTGACCCTAAACGTTTGGAGAAAGATTTAAGAGACTCTCTCTTTGGGCAGCACATCGCGTCTGATGTTGTACTAAAAGCTGTAACATCATTTATGACTGACAGCAAACCAAACAAACCGCTGGTCCTCTCTTTCCATGGGACTACAGGAGTTGGGAAAAATCATGTCGCTAAAATCATCGCAAGAAATATTTATGAAAAAGGGGAAAACAGCAAGCATGTTCACACATATATATCTGAGCATCATTTCCCACACAAAGAAAAGTCAGACCTATACAGCGCACAGCTAAAGCAGTGGATTCATGAAAGTGTATCAAGTTTTCCCTGCTCCATGTTCATATTTGATGAAATGGACAAGATGCATCCACAGCTGATTGACACCATAAAGGCCTTTCTGGACTACACTCCCCGTGTTGACGGAGTGTCATTCCACAATTCAATCTTCATTTTTCTCAGTAATGGAGGTGGGAATGTGATTGCTAAAGTGGCTCTAGATTTCTGGAAAGAAGGCAAAGATCGGGAAGAGATCAGGATGAACAGCAAGGGACTGGAGACTAAAATCTTTCAAAACATTTTCAATGAAAAAAACAGTGGATTTCTGCACTCCAGTATCATAGATCATCATCTGGTTGATCATTATATTCCTTTCCTACCTCTGGAGCTGAAGCATGTGCGTCAGTGTGTCCTGGCTGAGATGGATCATCTGAACATGACTCAAGACTTTGATCTGGCAGATAAAGTGGCCAAAGAAATGCCCTTCTTCCCTGAAGAAGAGAAAATCTTTTCTGTTAAAGGCTGCAAGTCTGTCAGACAGAAGTTGGCCCTACAAACTGATGAATAGACGAAAGACTTGAACAGCAGCACTTGTCCAATTTATTGTTTTAACTTTTAAACACACAGTTGAACAGCAATGAAGTATGACCTTACATCTTTGTTTTAACTTATTAATATTTCAGTTTTGATGAGTTACATTGCTAACTGGAGTCTGGAGTCTCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01538233_01543680.mRNA True 1295 mRNA 0.40 5 1538071 1543838

Neighbor

gene id symbol gene type direction distance location
CI01000001_01530818_01536092 NA coding upstream 1836 1529799 ~ 1536235 (+)
CI01000001_01527865_01529016 NA coding upstream 8976 1527676 ~ 1529095 (+)
CI01000001_01517517_01521698 NA coding upstream 16028 1517182 ~ 1522043 (+)
CI01000001_01511371_01514291 NA coding upstream 23384 1511371 ~ 1514687 (+)
CI01000001_01504275_01507238 NA coding upstream 30577 1504275 ~ 1507494 (+)
CI01000001_01545235_01551987 DNAJC16 coding downstream 1397 1545235 ~ 1552023 (+)
CI01000001_01589727_01595957 NA coding downstream 45889 1589727 ~ 1596289 (+)
CI01000001_01656726_01659321 MUL1B, MUL1 coding downstream 112219 1656057 ~ 1659430 (+)
CI01000001_01668334_01670035 CAMK2N1B coding downstream 123924 1667762 ~ 1671167 (+)
CI01000001_01748436_01754956 DDX19A, DDX19B, RP11-529K1.3 coding downstream 204500 1748338 ~ 1754956 (+)
G13493 NA non-coding upstream 121419 1416412 ~ 1416652 (+)
G13492 NA non-coding upstream 127000 1410678 ~ 1411071 (+)
G13442 NA non-coding upstream 160048 1302726 ~ 1378023 (+)
G13435 NA non-coding upstream 249571 1286954 ~ 1288500 (+)
G13434 NA non-coding upstream 251341 1286317 ~ 1286730 (+)
G13448 NA non-coding downstream 16550 1560388 ~ 1565557 (+)
G13570 NA non-coding downstream 120427 1664265 ~ 1664492 (+)
G13574 NA non-coding downstream 138926 1682764 ~ 1683123 (+)
G13697 NA non-coding downstream 159146 1702984 ~ 1704437 (+)
G13051 NA other upstream 492919 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1046014 483853 ~ 488825 (+)
G12614 NA other upstream 1227130 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 2072410 3618075 ~ 3621451 (+)
G15794 NA other downstream 3517380 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3742911 5279837 ~ 5287698 (+)
G15995 NA other downstream 4168047 5711885 ~ 5714951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022564 tor1l2 coding NC_007134.7 CM002907.2 37539068 ~ 37546696 (-)