CI01000001_01589727_01595957


Basic Information

Item Value
gene id CI01000001_01589727_01595957
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1589727 ~ 1596289 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01589727_01595957.mRNA
ATGAACCTGCCGCTTCCTCTTCTGTGCGTCCTCCTGGAGCTCCTCGCGGTGAGCTATGGTTTCACAGGTCAGGATCTGCTGCAGAGCCGTATCGTGGGTGGATACGTCCCGACGCCGTACTCTATCAAGTACATCGTGTCCATTCAGAGCGCTACGGGCCAGCACTTGTGTGGCGGGACCTTAATTAACAAATACTGGGTGCTGACCGCAGCACACTGCAATATAGGCTTTGTGTCTCTTGCGCCGCTGCCTCGGCAGGACGCCATGGTGGCCGTGGGTCGCGTGTGCAGGGTGTCCGGATGGGGCTTCACCACTCCAACGGGAGGAATCCCTGCAACGCTGCAGACGGTGAAGCTGCCCATAGTGTCCACCGCAGTGTGTAATGGCACAGACTCTTTTAATGGAAACATCACAGAGAATATGATCTGTGCAGGATACAGCACAGGAGGAAAAGACGCATGTAAGGGGGATTCTGGAGGACCGCTGGTGTGCGAGGGCCGTGTCTACGGCATCGTCTCCTGGGGCAATGGCTGTGCTGATGCCCAGTACCCTGGCGTCTACACTTCCGTCTCAAGGTTTCGCCAATGGATCGATGGAACTATATTTGGCTTTTATGGAAGGTGCCTCAAGTATTAGACTGCAGTGTTACCCCAGCACTCCCCTAATCGAACTTGAAACAGCCTCGAAACATGCCAACTTGTACAAGAATATTTGAAAAGTTAGTGAACTTTGTTTTTCAGAAGAGTACACTGCTGTTCTGAAACAACACATCTGTTCCTCAACGACTGGTAGACCTTTTTTTAAACAATAGTTTGCGCAAACTGTTCCTTAAATGTGCCATAATGCTGCTTCTCTGCAAAGTCAGTGAAAACTAAAAATAGAAAGCTGAAGGAATATTTTCCAACAAACGAAACAAATTACAAACTTTTTTTTATGGAATGATACTTGTGAGAACGACCTATTCAACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01589727_01595957.mRNA True 968 mRNA 0.49 4 1589727 1596289

Neighbor

gene id symbol gene type direction distance location
CI01000001_01545235_01551987 DNAJC16 coding upstream 37704 1545235 ~ 1552023 (+)
CI01000001_01538233_01543680 NA coding upstream 45889 1538071 ~ 1543838 (+)
CI01000001_01530818_01536092 NA coding upstream 53492 1529799 ~ 1536235 (+)
CI01000001_01527865_01529016 NA coding upstream 60632 1527676 ~ 1529095 (+)
CI01000001_01517517_01521698 NA coding upstream 67684 1517182 ~ 1522043 (+)
CI01000001_01656726_01659321 MUL1B, MUL1 coding downstream 59768 1656057 ~ 1659430 (+)
CI01000001_01668334_01670035 CAMK2N1B coding downstream 71473 1667762 ~ 1671167 (+)
CI01000001_01748436_01754956 DDX19A, DDX19B, RP11-529K1.3 coding downstream 152049 1748338 ~ 1754956 (+)
CI01000001_01762809_01771029 CPSF3L coding downstream 166520 1762809 ~ 1771029 (+)
CI01000001_01833609_01860272 CENB5, ACAP3 coding downstream 236972 1833261 ~ 1860953 (+)
G13448 NA non-coding upstream 24170 1560388 ~ 1565557 (+)
G13493 NA non-coding upstream 173075 1416412 ~ 1416652 (+)
G13492 NA non-coding upstream 178656 1410678 ~ 1411071 (+)
G13442 NA non-coding upstream 211704 1302726 ~ 1378023 (+)
G13435 NA non-coding upstream 301227 1286954 ~ 1288500 (+)
G13570 NA non-coding downstream 67976 1664265 ~ 1664492 (+)
G13574 NA non-coding downstream 86475 1682764 ~ 1683123 (+)
G13697 NA non-coding downstream 106695 1702984 ~ 1704437 (+)
G13761 NA non-coding downstream 182096 1778385 ~ 1778757 (+)
G13051 NA other upstream 544575 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1097670 483853 ~ 488825 (+)
G12614 NA other upstream 1278786 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 2019959 3618075 ~ 3621451 (+)
G15794 NA other downstream 3464929 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3690460 5279837 ~ 5287698 (+)
G15995 NA other downstream 4115596 5711885 ~ 5714951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022560 zmp:0000001088 coding NC_007134.7 CM002907.2 37412800 ~ 37432459 (-)