CI01000001_04950531_04960550 (NACA, NACA.2)


Basic Information

Item Value
gene id CI01000001_04950531_04960550
gene name NACA, NACA.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4950531 ~ 4960695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04950531_04960550.mRNA
AGATAAGCGCATTAAAAATATATGTATATTTTTACCCGAAAATGCGGTTCCTCGCTTATCAGCAAGAGTGTATCCAAAAGCAACTTCCTGTTGGAGCCGGAAGCAGAGTTGTGACATCAGAGCGACGCAGAGGTCAGAAACCCTCTCTTACAGCCATCTTGGATCCTGTGCCCTGAACTATCCAGAATGCCAGGCGAAGCCACAGAAACTGTCCCTGTTACAGAGCAGGAGATGCAGCAGCCACAGGCTGAGACGGGGATTTATTGTGTTCAGGAATGTATATGCTAGGCCTTGTGATCTTCATGAGGAGAAGAATGTAATTCAACATGTTTACAATGCAAAGCCTAAAGAGGGCAAAACTAACCCCAAGCTGTCCTCCTCTCCTCACGCCACTGCTCCTAAGCCAGTTCCTGTAGGACGCAGGAAGCGCTCCTCTCTATCTGCCTCCTCAAGCTCCCCTACCTCTCCTAAATCTGCCTCAGGCCCTCGTGCTACCCCTCCATGCTCCCCTTTGGCCTCTCCTCCAGCTGACTCCCCTGTAGCCTTGAAAGCTGAGCAAACTGCTCCCAAGGTGATAAAGGCTGGCAAACAAGGGAAGCAACATAAAACAAAGAATTTTAAACCTGCTGAACATGAGCAGACGCCTCCCTCTGCCTCCAAGCCTGCTCAAGAGCCTGCACCAGTGACAGCTCTGCCATCTCTTGCTATACCAATTCCAGAGGTAGCAAAACCAGCAGGCAATGCTGATGCTTCCCCTGTCTCTCCCAAAGTTACTGTGGCTCCTGTGGCCTTCAAAGTAACTTCCAAACCTGCTGTCCCAGCACCCAAGTCATTTACAGAAGCTGTGGCCACCAGTCCACCTAAAGTGGCTGAAAACCCCAAGGTTGCCTCTGAAGCTCCAAAAGTAGCAACCCATGCTGCTTCAGAAGCCAAGATGACTTCACCTTCAAAAGCAGCTCCAAAGCCTGGCCCTGCCCAAGTGCCAAATGTGAACCCAGCCACTGCTGCTCCACCAAAACCTGCTCCTCGGGTTGTGCCTGCACAGATTGAGGATGATGATCTGCCACCTCTCTTACCACCTGAGAATCCTTTTACAATGCCTGCTTTCCCCCCCATGCCACCTAGTGCAATCCCTGTAGTTACCCCAACAGCTCCTAAAGCTGAACCTGTCGCCTCCAGTAAAGTTGAATCTGGCCCTGCACCTAAAGCAAAGGTTGTTCCTAAAGCTAAACCAGCTCCTAAAGCTGAACCTGTCCCCACACTTAAAGTAGCGACTACCCCTGTACAGAAAGCAGCACCTGAACCTAAAGTTGAGCCTGTCCACACCCCTAAAGATGAGTCTACTCCTGCCCCTAAGGTTGCAGTCCCTCTTGCTCCTAAAGCTGAAGCTGCCCCTAAGATAGAGGCTGCTCCTGCACCTAAAGCTAAGTCTACCCCTAGCCCTAAGGCTGAGCCTGCTCCTGCCGTTAAAGTTAAACCCGTTGCTGCTCCTAAAGCTGAGGTGGTGGCTCCTAAAGTTGAGGCTGCTCCTGCACCTAAAGTTAAGCCTGCTCCTAAAGCAGAGCCTGCCCCTGCCTCTAAAGTTGAGCCTGCCCCTGCCGTTAAAGTTGAGCCTGCCACTAAAGCTAAGTCTGCTTCTACCTCAAAGGTTGAGGCTGCCCCTAAAGTTGAGGTTGAGGCTGCCGCTGCCCCTGCCACTAAAGTTGAGGCTGCCCCTGCCCCTAAAGTTGAAGCTGCCCCTAAAGTTAAAGCTGCACCTGCCCCTAAAATTGAGGCTGCTGCCCCTAAAGTTAAACCTGTGCCTGCCCCAAAAGTTGAGGCTGCTGCTCCTAAAGTTGAGGGTGCACCTGCCCCAAAAGTTGAGGCTGCTGCCCCAAAAGTTGAGGCTGCTGCCCCAAAAGTTGAGGCTGCTGCCCCAAAAGTTGAGGCTGCTGCCCCTAAAGTTGAGGCTGCTGCCCCTAAAGTTAAACCTGCGCCTGTCCCAAAAGTTAAGGCTGCTGCTCCTAAAGTTAAACCTGTGCCCGTCCCCAAAGTTGAGACTCCTGCCCCAAAAATTGAGGCTGATGCCCCTAAAGTTGAGGCTGAGCCTGCCCCAAAAGTTGAGGCTGCTGTCCCTAAAGTTGAGGCTACTGCTGCACCTGCCCCTAAAGTTGAGCCTGTCCTTCCCCCTAAAGTTGAGCCAGCACCTGTTCCCACACCACTTAAAGCCCCATCTATACTGGAACCAGTCATCAAGAACGACAAGGGGTCCGGCACTGAATCTGACAGTGACGAATCTGTTCCTGAACTGGAGGAGCAGGACTCTGCACAGACACAGACACAGCAGGCACAGCTTGCAGCTGCAGCTGAAATCGATGAAGAACCTGTCAGCAAAGCAAAACAAAGCAGAAGTGAAAAGAAAGCCAGGAAGGCCATGTCCAAATTGGGGTTGAGACAAGTTGCTGGTGTTACCAGGGTAACCATTCGCAAGTCCAAGAACATTCTCTTTGTCATCACCAAACCAGATGTCTACAAAAGTCCAGCTTCAGATACTTACATTGTCTTCGGTGAGGCCAAGATTGAAGACCTGTCACAGCAAGCTCAGTTAGCAGCTGCAGAGAAGTTCAAGGTTCAAGGAGAAGCCGTTTCAAACATCCAGGAAAACACACAGACGCCCACAGTACAGGAGGAGAGCGAAGAGGAAGAGGTTGATGAGACCGGAGTGGAAGTCAAGGACATTGAGCTGGTCATGTCACAGGCCAATGTATCCAGGGCAAAGGCTGTGCGTGCACTGAAGAATAACAATAACGACATTGTCAATGCTATTATGACTGAAATGGCTGCCAGGATAGCTTTAGTTGGAGCTTTACGTAATATCGGTTCCAGGACGAGTGTCGTTAGTTCACAGCGACTGCTTTGCACTCAGGACAGAGGACGAGGATCATCTGACATTGTAAGGGTACTGTATGATGGAGAATGCCCAATATGTGTTAAAGAAATCAGCTTTCTTCAGTTTCTTCAGAGAAACAGAGCAGATAAAGTAGATTTTGTGGACATTTCACTGCCAGAATATGATGGCACAAAATATGGAGTCAGTTATGAGATGGCAATGGAGGAAATGACAGTGATTGATACGAATAACAAGGTTCATCGTGGTGTGCCAGCTTTTACAGTCATGTACAGTGCTGTGGGTTTGGGTTGGCTTGGATGGGTCATCTCTTTCCCACTGTTCAGGCCGGTAATGGATCGCGCCTATGGGGTGTTTGCAAGAAACAGACTGAAGTGGACCGGCAGAGAGGGCTGCATCACTGGACGCTGTGATAAAAAAGAGACATAAGGGTCAGAGCACTTTAAAATGGACTCCATGAAATATCATCAAGTCAATGGATGTATTGTTAGTAATTGTTACTGTAAAGTTTACTTTTTTGCATCTATTATTTAAAAGAGTCTGAATATAACTGTTATATCCATATGTGCTTAGA

Function

symbol description
naca Predicted to enable unfolded protein binding activity. Acts upstream of or within definitive hemopoiesis and myofibril assembly. Located in cytoplasm and nucleus. Is expressed in cardiac muscle; hematopoietic system; skeletal muscle; and somite. Orthologous to several human genes including NACA (nascent polypeptide associated complex subunit alpha) and NACA2 (nascent polypeptide associated complex subunit alpha 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K03626 EGD2, NACA; nascent polypeptide-associated complex subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04950531_04960550.mRNA True 3461 mRNA 0.49 12 4950531 4960695

Neighbor

gene id symbol gene type direction distance location
CI01000001_04936808_04943256 PRIM1 coding upstream 7076 4936808 ~ 4943455 (+)
CI01000001_04914279_04922772 RND1B, RND1, RND1A coding upstream 26852 4914150 ~ 4923679 (+)
CI01000001_04901365_04901652 NA coding upstream 47964 4901275 ~ 4902567 (+)
CI01000001_04779079_04792659 SLC17A9B, SLC17A9 coding upstream 157704 4778937 ~ 4792827 (+)
CI01000001_04773238_04776581 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding upstream 173202 4772701 ~ 4777329 (+)
CI01000001_04962494_04971921 NA coding downstream 1799 4962494 ~ 4972231 (+)
CI01000001_04976994_04988795 NFASCB coding downstream 15652 4976347 ~ 4989082 (+)
CI01000001_04993860_04998535 NA coding downstream 33165 4993860 ~ 4998761 (+)
CI01000001_05051664_05059659 MFSD4B coding downstream 90834 5051529 ~ 5059940 (+)
CI01000001_05071017_05075175 NA coding downstream 108608 5069303 ~ 5075753 (+)
G15789 NA non-coding upstream 14541 4935371 ~ 4935990 (+)
G15419 NA non-coding upstream 149001 4800973 ~ 4801530 (+)
G15416 NA non-coding upstream 152737 4797476 ~ 4797794 (+)
G15395 NA non-coding upstream 192112 4753717 ~ 4758419 (+)
CI01000001_04723418_04724292 NA non-coding upstream 224860 4723354 ~ 4725671 (+)
G15798 NA non-coding downstream 42475 5003170 ~ 5003390 (+)
G15800 NA non-coding downstream 45127 5005822 ~ 5006037 (+)
G15812 NA non-coding downstream 80671 5041366 ~ 5041565 (+)
G15817 NA non-coding downstream 100112 5060807 ~ 5061182 (+)
G15796 NA non-coding downstream 109777 5074401 ~ 5074805 (+)
CI01000001_03618075_03620436 NA other upstream 1329080 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3279527 1667762 ~ 1671167 (+)
G13051 NA other upstream 3905379 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4458474 483853 ~ 488825 (+)
G12614 NA other upstream 4639590 309144 ~ 310941 (+)
G15794 NA other downstream 100523 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 326054 5279837 ~ 5287698 (+)
G15995 NA other downstream 751190 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2571877 7531541 ~ 7540586 (+)
G17234 NA other downstream 3071429 8032124 ~ 8032483 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G204483 NA non-coding CI01000048 null 377003 ~ 377295 (+)