G15796


Basic Information

Item Value
gene id G15796
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5074401 ~ 5074805 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17654
GAAGAAGAAGAGCCGTTACTGCTGCTGAATGAACAACGAGCACAGATGGGCTTATTACGACATTATTACACGGATATTTGGTCGTATGCAAGCTTGTTTGAACATTCGCTTATTCCCTCTTTTTAGGCAGAAAAAAAGAAGGAGAATAGCGGCGCTGACTGAGAAGATAGAGATGAGATGAAATGAATAAGAGCTGGCTGCAGCATGGCAGTTGAAGGTTGCAGCATTGGTGACTGGGATGGCTGATGGAGTCATGAAGAAGTTTCAGGAGAGATCTGGCCCTTTCACACACCCAGACTTTGAGCCTAGTGAGGAGATGCTGTTGCTCGGGACGGTGATAACCTGAAGCATGTGTTCTTGGAGTCTTTAGAGAGAGCAGCTGAGTTTAATATCCCCTCACTCAAGGTGTGGTTAAACTCATCATCCCTGCTGTTGCATCCACAAATGCAGTCATTGCTGGTATGGATTTCACCTGAGAGGAATCCCCCTAACCCTATTTTCAGCTGCTTGCATCACAGAAGTTTTTAAAATTGCTACAAGACAAATGAAGTTCCCAGCTATCACTACAACACTTGAAGAGAAAAATAAAACACTCTATTTGCAGACCATTACCTCAATTGAAGAAAGAACAAAACCCAATCTATGCAAAACATTGAATGAGCTGGGATTGGCTGATGGACAGAAGTTAGCTGTCGCTGATGTCACCACACCTCAGACTGTCATCTTCAAGCTCAAGTTCACGTCATAAACATGCAGCATTAACCATGTACAAAATTAAATGAATGGCAGAGGTTCCTCAAACTCACCTGTAACAGTTTCTTCACAAATTATACATATTGTAAATTTTCCTTATCTTTATATAAATAACTCCCTTCATTTTTAGAGTCTGTTTGCTTTGTGCTTCAGTCATGTTTTGTTTTCACTTTATCATTCATGAGGAAGGTTGTCATTTTATCAACCAACAATCCAGACAATTTTAAGATTATGTAAGGATGATGAGTCCTGTACCACAAAGCAAGTTTAGCCAGGTAAGGTTCAGTACCACAAGTTTGTGTTCACTGGATTAGTAACAAACACTGTATGACTAACCTACCCCAGGCAGGGTAAGTTATGTTTTCAATCACAGATCACCAATCAGCTGAGAATAATGAAGTCACACACCCTGTATCTCTTACTCCATTTTTATTTATTTTTTTTATAATGATTATATTGTTCATCATGATGTCTTGTGCTGTGTATTTAAATTCTTGATGTTTTTCATAATTATCAATGATCAAACCAATACTGTAACGAGTTTCTTTAACTTGTGGTACAGGGCTCTGGTACATCTGTGTCAGTGGGATTTTTTGTTTAACATTTAGTTATTAAGACTTTGCAATAAGGTCCCATTAGTTAATGTCAGGTGATGCAATAACAAACAATGAGCAATAGCTTTATTACAGTATTTATTAAGTGCAACTGTTTATTGTTCGTTCATCTGAGCAGGTACATTAAA
>TU17655
GAAGAAGAAGAGCCGTTACTGCTGCTGAATGAACAACGAGCACAGATGGGCTTATTACGACATTATTACACGGATATTTGGTCGTATGCAAGCTTGTTTGAACATTCGCTTATTCCCTCTTTTTAGGCAGAAAAAAAGAAGGAGAATAGCGGCGCTGACTGAGAAGATAGAGATGAGATGAAATGAATAAGAGCTGGCTGCAGCATGGCAGTTGAAGGTTGCAGCATTGGTGACTGGGATGGCTGATGGAGTCATGAAGAAGTTTCAGGAGAGATCTGGCCCTTTCACACACCCAGACTTTGAGCCTAGTGAGGAGATGCTGTTGCTCGGGACGGTGATAACCTGAAGCATGTGTTCTTGGAGTCTTTAGAGAGAGCAGCTGAGTTTAATATCCCCTCACTCAAGGTGTGGTTAAACTCATCATCCCTGCTGTTGCATCCACAAATGCAGTCATTGCTGGTATGGATTTCACCTGAGAGGAATCCCCCTAACCCTATTTTCAGCTGCTTGCATCACAGAAGTTTTTAAAATTGCTACAAGACAAATGAAGTTCCCAGCTATCACTACAACACTTGAAGAGAAAAATAAAACACTCTATTTGCAGACCATTACCTCAATTGAAGAAAGAACAAAACCCAATCTATGCAAAACATTGAATGGTGAGATCTTTTCCAGCCATGAGAAACATATAAAAGCACAACTGAAATTGAACTATCGAACGATCAGAAGGTTGCCAGCATTATCTGTTTTATTCAACATTCTTGCTAATGGTTTGTTTGTATGCGTGTATGATGAAGAGCTGGGATTGGCTGATGGACAGAAGTTAGCTGTCGCTGATGTCACCACACCTCAGACTGTCATCTTCAAGCTCAAGTTCACGTCATAAACATGCAGCATTAACCATGTACAAAATTAAATGAATGGCAGAGGTTCCTCAAACTCACCTGTAACAGTTTCTTCACAAATTATACATATTGTAAATTTTCCTTATCTTTATATAAATAACTCCCTTCATTTTTAGAGTCTGTTTGCTTTGTGCTTCAGTCATGTTTTGTTTTCACTTTATCATTCATGAGGAAGGTTGTCATTTTATCAACCAACAATCCAGACAATTTTAAGATTATGTAAGGATGATGAGTCCTGTACCACAAAGCAAGTTTAGCCAGGTAAGGTTCAGTACCACAAGTTTGTGTTCACTGGATTAGTAACAAACACTGTATGACTAACCTACCCCAGGCAGGGTAAGTTATGTTTTCAATCACAGATCACCAATCAGCTGAGAATAATGAAGTCACACACCCTGTATCTCTTACTCCATTTTTATTTATTTTTTTTATAATGATTATATTGTTCATCATGATGTCTTGTGCTGTGTATTTAAATTCTTGATGTTTTTCATAATTATCAATGATCAAACCAATACTGTAACGAGTTTCTTTAACTTGTGGTACAGGGCTCTGGTACATCTGTGTCAGTGGGATTTTTTGTTTAACATTTAGTTATTAAGACTTTGCAATAAGGTCCCATTAGTTAATGTCAGGTGATGCAATAACAAACAATGAGCAATAGCTTTATTACAGTATTTATTAAGTGCAACTGTTTATTGTTCGTTCATCTGAGCAGGTACATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17654 False 199 lncRNA 0.32 2 5074401 5074805
TU17655 True 199 lncRNA 0.32 2 5074401 5074805

Neighbor

gene id symbol gene type direction distance location
CI01000001_05051664_05059659 MFSD4B coding upstream 10532 5051529 ~ 5059940 (+)
CI01000001_04993860_04998535 NA coding upstream 71711 4993860 ~ 4998761 (+)
CI01000001_04976994_04988795 NFASCB coding upstream 81390 4976347 ~ 4989082 (+)
CI01000001_04962494_04971921 NA coding upstream 98241 4962494 ~ 4972231 (+)
CI01000001_04950531_04960550 NACA, NACA.2 coding upstream 109777 4950531 ~ 4960695 (+)
CI01000001_05223340_05229184 IDH3G coding downstream 146854 5223340 ~ 5229659 (+)
CI01000001_05270301_05279405 AVPR2AB coding downstream 193815 5270301 ~ 5280807 (+)
CI01000001_05279884_05287123 NA coding downstream 203351 5279837 ~ 5287698 (+)
CI01000001_05365373_05384192 MYH7B, MYH7BA, MYH7BB coding downstream 288676 5365162 ~ 5384238 (+)
CI01000001_05401665_05402500 EMP3B, EMP3 coding downstream 325179 5401665 ~ 5402771 (+)
G15817 NA non-coding upstream 9290 5060807 ~ 5061182 (+)
G15812 NA non-coding upstream 28907 5041366 ~ 5041565 (+)
G15800 NA non-coding upstream 64435 5005822 ~ 5006037 (+)
G15798 NA non-coding upstream 67082 5003170 ~ 5003390 (+)
G15789 NA non-coding upstream 134482 4935371 ~ 4935990 (+)
CI01000001_05075984_05079729 NA non-coding downstream 2272 5075934 ~ 5079731 (+)
G15875 NA non-coding downstream 106586 5183072 ~ 5183360 (+)
G15877 NA non-coding downstream 120175 5196661 ~ 5196928 (+)
G15878 NA non-coding downstream 120539 5197025 ~ 5197241 (+)
G15879 NA non-coding downstream 121060 5197546 ~ 5197755 (+)
G15794 NA other upstream 5768 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 1449021 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3399468 1667762 ~ 1671167 (+)
G13051 NA other upstream 4025320 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 4578415 483853 ~ 488825 (+)
G15995 NA other downstream 635399 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 2456086 7531541 ~ 7540586 (+)
G17234 NA other downstream 2955638 8032124 ~ 8032483 (+)
G17353 NA other downstream 4139536 9216022 ~ 9228859 (+)

Expression


Co-expression Network