XLOC_006754 (si:dkey-71p21.13)


Basic Information

Item Value
gene id XLOC_006754
gene name si:dkey-71p21.13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33320063 ~ 33321541 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013007
ATGCTCCATCTTCTATTTTGTATTTTAGCCAAAAGCGCTGCATCTTTTATTGTCAGCGCACCAAATAATGCGGTGATTGCAGTCAGGGGTCGTCCAGCTGTTCTGGGTTGTTATTTCATGCCAGACCCTGATCTATCCAGTCTTTCTATTGTTTGGCAAAGAATGGAGGATTCAAGGCTGGTGCACGTTTTCTATGATGAAGAAAACCTGCAAGAACAACAAAGTGCAGAGTACCACAGCCGGACCTCACTGTATATTTCAGAGCTTAATAAAGGGAACGCCTCTCTCAGGATAGATGGAGTTGGACTAAAGGATGAGGGTTGGTACGTGTGTAAAGTGAGAAACAAGAAAGGAGCAGGAAAAGTCAAAATAAAACTGGACTATGGAGCCTTTTATTCAGAGCCCAGATTAAGCATCCATGCAAACTCCTCCTCAGTGAGGGTGCAGTATGAGACGGAGGGTTTCCCCAAACCTGAGGTGATCTGGCAGGACGAACACAACCAGAGCCTCAGTCATCACCTGGAGCTCCTTGACCACACAGAAGTTGGACTTTATTTAGTAAAGAGCAGCTATGAGGCCCAGACACCAGTAGTGAAAGTCACATTTATACTAAAGAACCACCTCCTGAACCAAAAGCTGCAGAAATCAGTGATCTATAGTAAAGACTTTCTCTCTATCTTTACATTTCTTCAGATTTTCATCATAGATTTTGATTTACGCTTGTGa
>TCONS_00013008
CACTGAAGTTGCGAAAACACAATAAGACGTTCTTAAACTTGGGTTTAGGAAATGCTCCATCTTCTATTTTGTATTTTAGCCAAAAGCGCTGCATCTTTTATTGTCAGCGCACCAAATAATGCGGTGATTGCAGTCAGGGGTCGTCCAGCTGTTCTGGGTTGTTATTTCATGCCAGACCCTGATCTATCCAGTCTTTCTATTGTTTGGCAAAGAATGGAGGATTCAAGGCTGGTGCACGTTTTCTATGATGAAGAAAACCTGCAAGAACAACAAAGTGCAGAGTACCACAGCCGGACCTCACTGTATATTTCAGAGCTTAATAAAGGGAACGCCTCTCTCAGGATAGATGGAGTTGGACTAAAGGATGAGGGTTGGTACGTGTGTAA

Function

symbol description
si:dkey-71p21.13 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-327 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000076139

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013007 False 726 mRNA 0.43 3 33320063 33321058
TCONS_00013008 True 386 mRNA 0.43 3 33320604 33321541

Neighbor

gene id symbol gene type direction distance location
XLOC_006753 tmem234 coding downstream 2665 33314673 ~ 33317398 (-)
XLOC_006752 NA coding downstream 18893 33261131 ~ 33301170 (-)
XLOC_006751 nusap1 coding downstream 63396 33251721 ~ 33256667 (-)
XLOC_006750 rtf1 coding downstream 73909 33229446 ~ 33246154 (-)
XLOC_006749 golga5 coding downstream 92652 33211014 ~ 33227411 (-)
XLOC_006755 zgc:172120 coding upstream 20914 33342455 ~ 33362191 (-)
XLOC_006756 btbd6a coding upstream 72575 33394116 ~ 33398735 (-)
XLOC_006757 NA coding upstream 130897 33452438 ~ 33463644 (-)
XLOC_006758 NA coding upstream 135982 33457523 ~ 33459318 (-)
XLOC_006759 rrbp1a coding upstream 290162 33611703 ~ 33639050 (-)
XLOC_006471 BX537274.2 misc downstream 23055158 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32493838 825904 ~ 826225 (-)
XLOC_006741 NA non-coding downstream 323567 32946711 ~ 32996496 (-)
XLOC_006738 CU019663.1 non-coding downstream 512422 32793864 ~ 32807641 (-)
XLOC_006731 NA non-coding downstream 752807 32457931 ~ 32567256 (-)
XLOC_006768 BX649403.1 non-coding upstream 1317088 34638629 ~ 34638746 (-)
XLOC_006769 BX649403.2 non-coding upstream 1322609 34644150 ~ 34644281 (-)
XLOC_006773 CR932983.2 non-coding upstream 1861453 35182994 ~ 35194759 (-)

Expression


Co-expression Network