LOC122325076 (ebf2,LOC107712533,LOC107560327,LOC107683778,LOC107557760)


Basic Information

Item Value
gene id LOC122325076
gene name ebf2,LOC107712533,LOC107560327,LOC107683778,LOC107557760
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27585631 ~ 27602190 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219944.1
CTTCCAGAATACATCGCCCGCTTTTTACAGGCTAGTGCTTTCGCGCAAGAAGTTGCCTTGTCGGtccaaatttgttttaaatgttcggGAGTCAAGCTCACCCGACAAGAAACGACATCAGTGGGAAAGCGGGAAGTTTTGAAGAGGAGATGGATCCTGTTCGTTCTTGGGTGCGGAATGTCGGCGTTATTGACGCAAACATAGCGGCGCAGAGTGGATTGGCCTTATCCCGTGCTCACTTTGAAAAGCAGCCTCCCTCCAATCTCAGAAAGTCCAACTTCTTCCATTTTGTCCTGGCGCTCTATGACCGCAGCGGACAGCCTGTGGAAGTGGAGAGGACAGCGTTCGTTGACTTTGTGGAGCAGGATAAGAGAGCAGACAGGGAAAAGACCAATAATGGAACTCACTACAAACTCCAGCTCCTCTACAGTAATGGTATGCGCACAGAACAAGACCTTTATGCACGTCTCATTGATTCCGTCACTAAACAGCCTATATCGTATGAGGGACAGAACAAGAATCCCGAGATGTGCCGTGTTCTGCTAACTCACGAGGTCATGTGCAGTCGCTGCTGTGAGAAAAAAAGCTGCGGCAATCGTAATGAGACACCATCTGACCCTGTCATCATTGACAGATTTTTCTTGAAGTTTTTCCTAAAGTGCAATCAAAATTGCCTGAAGACAGCAGGGAATCCCCGAGACATGAGGAGATTTCAGGTGGTTTTGTCAACTACAGTCAGTGTGGATGGACCTGTGCTAGCAATTTCTGATAATATGTTTGTGCACAACAACTCTAAACATGGACGTCGCTTGAGAACGGATTCTAATGAGACGGTGGAGAATAGCATGGAATACGCTACTCCCTGCATTAAAGCCATCAGCCCCAGTGAAGGTTGGACTACAGGCGGGGCTATGGTAATTGTGATTGGAGAAAACTTCTTTGACGGTCTGCAGGTGGTGTTCGGGAGCATGCTCGTGTGGAGCGAGTTAATCACTCCTCATGCTATCCGAGTTCAAACTCCTCCTCGACACATACCAGGGGTTGTAGAAGTTACGCTGTCTTACAAATCCAAGCAGTTCTGCAAAGGAGCTCCAGGACGCTTTATTTATACAGCGCTGAATGAGCCAACTATTGACTATGGTTTCCAAAGACTTCAAAAGCTGATCCCTCGACATCCTGGTGACCCCGACAAATTGGCAAAGGAAATGTTACTCAAAAGAGCAGCAGACGTTGTTGAATCACTCTATGGAAATGCCACCAGCAATCAGGACATGTTGCTGAAACGGGCGGCAGACATAGCTGAGGCTCTGTACAGCGTGCCACGACCTCACAGTCAGCTGCAGGCCATGCCAAGTTCTCCCGTCCATGGCAGCGTCATGGGCCTCAGCTCTTATCCCACCCAGCTGGGTGTAAGCATTGGAGAACCTGGGCAAACCAGCAGCCAAGgttacaACCGAAACCCAAGCAGTTTGTCACCGCGGGGCTACCCTTCAGCATCAACCCCTCAACAGTCAGGTTATGGATCCAATGGAGGCATGAGTGCGAGTTACGGAGCCGTGCCCATGAGTAGTCTGGGTGTTTCAGGGTCACCTGGCTTTAACAGTGCCTCACCAAACAGCTCTCCTTATGCTATCATGCCGTCTAGCCCCACCGTGCCTGGTTCCAGTTCTTCATCCTCCCTTTGCCTTTACGTCTTTCCCATCCtcgaacaaacaaaaagtgcCTTTGCTCCTGTCCTGAGACCGCAGGGTTCACCATCACCTGTTTGCCAGACCTCGGGAGGCTCTAGCTTTAGAGCAATGACAGGCCTTGTGGTTCCCCCAATGTAGAGGATTTTTCATTCATAAGCTCTGCAGTTAGTGGCTAAAACTGGACTGACACCAATGTTGTCTCTCACAAGCCACAATGAGTGAAAAAGATCTTCTGATGATGACCCATCAAGATTATTAGAGACCACAACGACATCTTCAGAAGATTTTGGGAACCTTCCGTTTGCCTCTGATTGCGAGGAGGTTGCCAAAGGGATGGTGTTACTTAAAGGTTCTTCCAGCCACAAAATGCCAAAAGAGGAATAATTTTATCGGAAAACATAAGACTCGAGACTGTTACACATTTCTGGCCATATGTTCTTGACAGACACGTTGGTCAATAGACTTTCACCGCAGTAGATGCCAGTAAAAGGGATGTCAGTTGTGtcagaacagtttttttatgcTGATAGATCTACGTCCCTCAactgaaattgtgtttttgaaagcatATATCAGGCTTTTCATTTAGAGAAACAGAAAATGTCtatttaggtttaggtttatgAACTGATTACCTCATATATTGACTTATTTAATGACAGAAACtatataagttatatttttagGTTAAGTACTAATATAAGGAACCATAATTGTATTtgctattgttattgttatctaattgtatttgttttttctgtaaaccTTTTATATGTTGTCATTTtgttattcatattaaaatagtgACTGTAGATTTTTACATGTACAAgagttttgttgttaaatgt

Function

symbol description
ebf2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural plate; brain; hindbrain neural rod; midbrain neural keel; and posterior neural keel. Orthologous to human EBF2 (EBF transcription factor 2).

NR:

description
PREDICTED: transcription factor COE2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09103 EBF, COE; early B-cell factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219944.1 True 2539 mRNA 0.45 17 27585631 27602190

Neighbor

gene id symbol gene type direction distance location
LOC122325363 slc25a5,LOC107378486,LOC108430428,LOC106515500 coding downstream 8259 27573863 ~ 27577372 (-)
zgc:175280 zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433 coding downstream 167211 27409502 ~ 27418420 (-)
zgc:152816 LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252 coding downstream 181236 27387290 ~ 27404395 (-)
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding downstream 246532 27336495 ~ 27339099 (-)
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding downstream 437586 27146476 ~ 27148045 (-)
G142614 NA non-coding downstream 109587 27475610 ~ 27476044 (-)
G142590 LOC107662078,LOC107560333,LOC107719753 non-coding downstream 110830 27471784 ~ 27474801 (-)
G142606 NA non-coding downstream 130739 27454693 ~ 27454892 (-)
G142586 NA non-coding downstream 134410 27446476 ~ 27451221 (-)
G142540 abhd10a,LOC107719764,LOC107662095,LOC107560335 non-coding downstream 208104 27375209 ~ 27377527 (-)
tex55 LOC107560331,LOC107702887 other downstream 107404 27476094 ~ 27478227 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other downstream 328149 27229803 ~ 27257482 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other downstream 660644 26922815 ~ 26924987 (-)
rps29 NA other downstream 1025244 26483321 ~ 26560387 (-)
G142278 NA other downstream 1351386 26232024 ~ 26234245 (-)

Expression


Co-expression Network