zgc:175280 (zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433)


Basic Information

Item Value
gene id zgc:175280
gene name zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27409502 ~ 27418420 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218750.1
TATGTCAGGCTTACAACTGCTAAATTCTTTTTTACGAGTGCCTGTCTCTTCTCCAGAAATCACACATTTCTTCTAAATGTAGCATAGTCTGTCAAAAAGTACACATGGGCGTTTTGGACACGTGAGAGTTTACAGGAGGGGCCCTCTGATATAGGCAGTGCTCAGGAACTCTTGGACCACGGTCACACCTTCACTCACAGCCTGGATTCTGAGCAGACAGGATGTCCTGTGACAAAGTGCTGTCCTTTTTGAAGAGCCTGTCGAGGCGAAAGCCACTGGAGCCTGATGGTGAAGAGTCCAACTTTAAGCGTTGCTTAACCACACTCGACCTAGTGGCCCTTGGGGTGGGAAGCACGCTTGGTGCTGGGGTCTACGTCCTTTCTGGGGAGGTTGCCAGAACAGTAGCCGGTCCCAGCATCATCGTGTCATTCTTCATTGCGGCAGTGGCGTCTGTGTTTGCGGGCTTGTGCTACGCAGAATTTGGCGCCCGAGTGCCCAAGACCGGCTCTGCCTACCTGTACAGCTACGTCACTGTCGGAGAGGTGTGGGCCTTCATCACCGGCTGGAACCTACTGTTATCATACATCATAGGCACATCAAGTGTGGCAAGAGCATGGAGTGGCACTTTCGATGACTTGATTGGAAATAAGATCGCCAATTATTTGAGTGAAAATACCCCAATGAATTTACCCGGCCTCGCTCCCTATCCAGACTTCTTTGCCGCTGGACTTATTCTGCTTTTGGCAGccATCCTTGCATTTGGTGTGAAGGAGTCTGCCATCGTCAACAAGATCTTCACAGCTATAAACATGGTAGTTCTGGTTTTTGTCATTATCGCTGGATTCATCAAGGGCGACCTTGGAAACTGGCAGATAACAGAGGAGGATATTTGGAACTACACGATAACTGCaaatatctCAGCCTCCAATGAAACTTTATCCAGTTTTGGAAGCGGAGGATTCTTTCCCTTTGGTTTTGAGGGAACTTTTGCCGGAGCCGCAACCTGTTTTTATGCCTTTGTGGGATTTGACTGCATTGCAACCACAGGTGAGGAGGTCAAAAACCCTCAGAAGTCTATCCCTATAGGAATCGTTGCTTCTCTTCTCATCTGTTTCTTGGCTTATTTCGGCGTTTCGGCTGCTCTCACCCTCATGATGCCCTACTACCAACTAAATATTCAGAGTCCCTTACCTGTAGCCTTCACCTATGTGGGCTGGGATCCTGCAAAGTACGCTGTGGCTGTTGGATCTTTGTGTGCTCTCTCAACAAGTCTGCTGGGGTCCATGTTCCCTATGCCCCGTGTGCTCTTTGCTATGGCCAGAGATGGACTGCTTTTCAAACCATTGAGTAACATGAGTTCCAGACAGAGCCCTGTCATCGCCACAATTTCTTCTGGAATAATAGCGGcaATAATGGCCTTGGTGTTTGACCTGAAGGCTCTAGTAGACATGATGTCTATTGGGACGCTCTTTGCCTACACCCTTGTAGCCATCTGCATCTTAATTCTTCGGTACCAACCAGAGCTAACTGAGATCAACGAGAAACCAGAATTTCAGAAGAAATGGAATCCTTTTCGCCCCCCTAAAACTGCATCTCCTTCAAGTTCTAAAGCTGTATCTATGCTAACCATATGTACCAttgtgtttGCTGTTATCCTGAGCGTGACTATAACAAAAGGCGTACAAGCTGGTCTGATTGGGGAGTGGTGGATTATTCTGATAATCACTTTGGTTTCGGTGGCGTTTGTCATgactatcattattatttggCGACAGCCACAGAATGgaaccaaagctgcatttatgGTCCCACTTCTGCCACTACTCCCAATTTTTAGTACATTCATCAATGTCTACTTAATGGTCCAGCTGGGGGGTGAAACCTGGATTCGCTATGCAGTGTGGATGGCAGTGGGCTTGCTTATCTACTTCTGTTATGGAGTGCACTTCAGTGTACAGAAGAAGCGGAACCAGTCTTCCAAACATCCCAGCAGTGTTGAGACAACTGATGTTAAAATGGAGGACAAGAAAAAACTGGGATCTACTACACCAACTTTACAAACCAAGTTTTAAAGCCAACATTAATGTCTAGTGCTGGTTGCTCCTGAGACAAGAGAGACAAGagaatctaaaatattatttttgtttttactgaaatttAAATTAGTATAAGGATGCATTCGTAACAAattatgactatatatatatatatatatatatatatatatatatata

Function

symbol description
zgc:175280 Predicted to enable L-lysine transmembrane transporter activity; L-ornithine transmembrane transporter activity; and arginine transmembrane transporter activity. Predicted to be involved in L-arginine import across plasma membrane and L-ornithine transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
cationic amino acid transporter 2-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K03294 TC.APA; basic amino acid/polyamine antiporter, APA family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218750.1 True 2234 mRNA 0.45 12 27409502 27418420

Neighbor

gene id symbol gene type direction distance location
zgc:152816 LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252 coding downstream 5107 27387290 ~ 27404395 (-)
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding downstream 70403 27336495 ~ 27339099 (-)
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding downstream 261457 27146476 ~ 27148045 (-)
her7 LOC107548512,LOC107662101,LOC107740036,LOC107556023,LOC107722746,LOC107702916 coding downstream 460607 26947330 ~ 26948895 (-)
ganaba zgc:171967,LOC107662060,LOC107702959,LOC107722752,LOC107548499,LOC108427707 coding downstream 469218 26926233 ~ 26940284 (-)
LOC122325363 slc25a5,LOC107378486,LOC108430428,LOC106515500 coding upstream 155443 27573863 ~ 27577372 (-)
LOC122325076 ebf2,LOC107712533,LOC107560327,LOC107683778,LOC107557760 coding upstream 167211 27585631 ~ 27602190 (-)
G142540 abhd10a,LOC107719764,LOC107662095,LOC107560335 non-coding downstream 31975 27375209 ~ 27377527 (-)
G142529 NA non-coding downstream 75786 27333297 ~ 27333716 (-)
G142515 NA non-coding downstream 110626 27215632 ~ 27298876 (-)
G142586 NA non-coding upstream 28056 27446476 ~ 27451221 (-)
G142606 NA non-coding upstream 36273 27454693 ~ 27454892 (-)
G142590 LOC107662078,LOC107560333,LOC107719753 non-coding upstream 53364 27471784 ~ 27474801 (-)
G142614 NA non-coding upstream 57190 27475610 ~ 27476044 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other downstream 152020 27229803 ~ 27257482 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other downstream 484515 26922815 ~ 26924987 (-)
rps29 NA other downstream 849115 26483321 ~ 26560387 (-)
G142278 NA other downstream 1175257 26232024 ~ 26234245 (-)
G142281 NA other downstream 1221583 26185660 ~ 26187919 (-)
tex55 LOC107560331,LOC107702887 other upstream 57674 27476094 ~ 27478227 (-)

Expression


Co-expression Network