ganaba (zgc:171967,LOC107662060,LOC107702959,LOC107722752,LOC107548499,LOC108427707)


Basic Information

Item Value
gene id ganaba
gene name zgc:171967,LOC107662060,LOC107702959,LOC107722752,LOC107548499,LOC108427707
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26926233 ~ 26940284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219305.1
cGAGAACATACgcgcatatttattttattttagtttccttGAAAAGGTCCACGTGTACGACACGTTTGAGCTGACTGGACGCGCGTGGAGGGCAAAGTTCACACGGAGGCAAGATGGCGGCTTCCTGTGACAGtttgtTGCCGCTGCTTCTGTTGTTGTGTCTGAGCGCTCAGGCTGTGGACCGCAGCAACTTTAAAACATGCGACCAGAGCGCTTTCTGCAAGCGTCAGAGGGAGCTGAAGCCGGGCCAGTCTCCGTACAGAGCTCTGCTGGACACGCTGGAGCTGAGCGACTCCAGACTCACCCTGCAGCTCATCAATGACAACAACAAGGTTCGCTTGTTGCTGGAGCTGTACAGACTGCAGGGCAACATGACACGGGTGAAGATTAATGAACTCAAACCACTTAAGCCTCGTTACGAGGTTCCAGATGTACTCATCTCTGATCCCATTACCGAAACGCTCTCCGTGGTGGCTCAGGATGAGAATAGTCTGGTTTTGTCTCTGGGCGGCAAAGATCAGCGTCTCATCGTAAGTGCTCAGCCATTTCGGCTGGACATTGTTGAGGGTCCTCAAGTGCTCATGTCACTCAACTCCCGTGGCCTGTTAGCCTTCGAGCACCTACGGGCACGCAAGGACACTATCTCTCATAAAATAAGTAGCACAGTTGGTAGCATGTGGGACTCGCTCAAGAGCATTTTCTCTAGCAAAAGTGAGTCAGAGCAAGCGACCGAACAGGAGAATGTGGAGCAGCAAACCAATGaggaTGGACagataaaagaagaagaaagtaaACCAGGCATGTGGgatgaaacatttaaatctcATACTGATTCAAAGCCCAATGGTCCATCATCTATTAGTTTAGATTTTTCTCTACCTGGTGTGGAACACGTCTATGGCATTCCGGAACACGCAGATACATTTAAACTCAAAAACACAGATGATTCAGACCCATATCGGCTGTACAACTTGGATGTTTTTCAGTATGAGCTACACAACCCAATGGCCCTTTATGGGGCAGTTCCTGTCCTGATATCTCATAGCACTGACCGCACCATGGGCATCTTCTGGCTCAATGCAGCAGAGACATGGGTGGACATCAGCTCGAATACAGCAGGAAAGACAATGTTTGGAAAAATACTGGACTTTGTACAAGTTTCTAGTGAAGCTCCTCAGACAGATGTACGCTGGATATCTGAGAGTGGTATTATTGATGTCTTCATAATGCTGGGACCAAAACCTGCGGATGTCTTCACTCAGTATGCCTCGCTTACagGTACTCAgtcttttcctcctctctctgcgCTGGCATATCATCAGTGCCGCTGGAACTATAATGACCAAGAAGATGTAAAGACTGTCGATCAGGGCTTTGATGAGCATGACATCCCGTATGACTTCATTTGGCTGGACATTGAACACGCAGATGGTAAGCGCTACTTCACCTGGGATCCCAGCAAGTTCCCCCAACCTAAAGAAATGCTGCAAGGTCTGATGGACAAAAGACGCAAATTAGTGGCCATTGTAGATCCTCACATCAGGGTGGACAGTGGCTACAGGATTCACAATGAGATTCGCTCCAAAAACCTGTATGTCAAAAACAAAGATGGAGGAGACTACGAAGGCTGGTGCTGGCCAGGTAATTCAGGCTATCCAGACTTCACTAACCCTGAGATGAGAGCCTGGTGGGCCAGCCAGTTTGCCTATGACCAGTACGAGGGTTCCATGGAGAATCAGTACATCTGGAACGACATGAACGAGCCGTCTGTGTTTAATGGGCCTGAGGTCACCATGCACAAAGATGCACTTCATGGTGTCTGGGAGCACAGAGACGTTCACAACCTTTATGGCCTTTATGTGCAAAAAGCGACCGCCGATGGCCTGATTCAGCGTTCAGGAGGAGTGGAGAGACCTTTCGTTCTGACTCGAGCATTTTTTGCTGGATCCCAGCGTTACGGTGCAGTGTGGACCGGAGATAACGCTGCCGAATGGGGCCATCTGAAGATCTCCATCCCCATGTGCTTGAGTCTGGGTTTAGTGGGCATCTCATTTTGTGGAGctGATGTTGGTGGTTTCTTTAAACATCCCAGCGCTGAGCTTTTGGTGCGATGGTACCAGGCGGGAGCTTACCAGCCGTTTTTTCGTGCACATGCTCACATAGACACACCTCGCAGGGAGCCCTGGCTGTTTGGACCCGAGAACACCGCTATCATCCGGGAGGCCATACGCCAGCGATATGCTCTCCTGCCGTACTGGTACCAGCTTTTCTACAACGCACACCGCACCGGACAGCCTGTTATGAGACCTTTATGGATAGAATATCCTGAAGATGGCGCTACTTTTTCAATTGAGGATGAGTACTTGATTGGAAAGGATTTGCTGGTGCATCCCGTCACTGATGAGGGCGCTACTGGTGTTACTGCCTATCTGCCTGGGAAAGGCGAGGTCTGGTATGATGTTCACACTTTCCAGAAGCATGATGGAGATCAGAGCCTCTACATTCCTGTCACCATGAGCTCTATCCCAGTTTTCCAGCGAGGAGGGTCCATTATCTGCAGAAAAGACCGTGTTAGGAGATCTTCGTCCTGTATGGAAAACGACCCGTACACTCTTTATGTTGCTCTCAATTCTCAGGGCTCTGCTGAAGGAGAGCTGTACATCGATGACTTCCACACATTCAGCTATAAAGAAGCAAAGCAGTTTGTCCACAGACATCTGTCCTTCTCTGCCGACACGCTGTCTTCCAGGAATCTGGCCCTAGACTCCCAGTTTTCCACTGCCTCTTGGATAGAAAAGATTGTGATCTTCGGAGGCAGTCGACCGTCCTCTGCCACACTGAAAAATGCAGatGGTACAGAGTCAGCTTTAGAGTTTGAGTTTGACTCTTCACTCGCAGTTTTGACTCTACGTAAGCCAGGGGTCAGTGCGGCGGCAGACTGGACCGTAGTCTTGCGGTAACACCGGGACGACGTGCAAACAACGGAGAAAAGATAAGCACTTGACCAGACACGATTACAAAATGAGAGACCAAACAAGGAACGGGAACATGCATAGAGGAACCGAGGAATCAGATGTTTTTAAGACCATATATgtgttagggttaggtaaaTTTTGAGAAGCCATCAGTGAAGTACAGGACCAGTGTATTAAGAGAGGGGTTTGATGACATTCAGCTCTGTTTTTCACAGAGCAGGCTGAAACTTCTCTTTTAGACATGCTTTTGACAttcaaattaacaaaattaaaaactggttgaaagtaaaaaaaaaaaaatgtagatgatgttgatttataattttttctttttctgtctcagGTCGTTAAGtgttttggcattaaaaataaattttaaccttcaaaaattaaaaatcatgtgCACCGagatatgctttttttttttaatgggcaATTAAGAAACTGGAAATTATGaatagtcaaaaatatttaatattttacattaaatctcATGAAACCAGTTATTTCACTCCAGAATCTAAAGAAATAACTACAATTtcattatacatattaataaatctaCTTTAGGACCATTGTTTTAGTGGCTTAGCTCTTTTAAAACCAAATTCTCATTTGAGTAAGACATTTTCTGAATCTCTATTAAATAGACTATAAGGGACCGttttcaaaaactaaatgaccaatggaaaataaatttagttggtaatattttaaaatgaattaatagatgttattatttataccTTTGTTTACTAGAGCACTGACGCCATCAGTTATTAGTAGTAaggttttgttaaaataaagagaataaGAGTGTAGAAACGGGGCTTGGTAAAGGTCTTTGAGGCTGTTGTTTGAAAGAGACCGATGagtttgagcagcaaaaaaaaaaaagagcaacctTGAAACTCTGATTAAATTACCCAAGTTTTTTCAACGCTGAGCAGTCATGAGGATTGATTTTGAAGGATTTCAACGGaataaaatggatttaaatataaaaaacagtaAGAAAAGCACACGAAAACGTAAAGTGTCATTGCAGTAAATGTCTCTGGCGTAGGAATGGTAGAAATAAAAGTGGCTCATCTGA

Function

NR:

description
PREDICTED: neutral alpha-glucosidase AB-like isoform X1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K05546 GANAB; mannosyl-oligosaccharide alpha-1,3-glucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219305.1 True 4071 mRNA 0.45 25 26926233 26940284

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_32 NA coding downstream 311503 26614643 ~ 26614730 (-)
LOC122325332 wdr20,LOC107730607,LOC107564583,LOC107704379 coding downstream 352220 26569767 ~ 26574013 (-)
LOC122325425 mdga2,LOC107704381,LOC107556994,LOC108257548,LOC108411484,LOC106571582,LOC106608140 coding downstream 486310 26325231 ~ 26439923 (-)
LOC122325330 NA coding downstream 618421 26307401 ~ 26307812 (-)
LOC122325526 LOC107659807,LOC107756058,LOC107567392,LOC107713860,LOC107659806 coding downstream 624358 26299497 ~ 26301875 (-)
her7 LOC107548512,LOC107662101,LOC107740036,LOC107556023,LOC107722746,LOC107702916 coding upstream 7046 26947330 ~ 26948895 (-)
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding upstream 206192 27146476 ~ 27148045 (-)
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding upstream 396211 27336495 ~ 27339099 (-)
zgc:152816 LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252 coding upstream 447006 27387290 ~ 27404395 (-)
zgc:175280 zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433 coding upstream 469218 27409502 ~ 27418420 (-)
G142440 LOC107397203 non-coding downstream 11952 26913969 ~ 26914281 (-)
G142439 LOC102197881 non-coding downstream 12375 26912869 ~ 26913858 (-)
G142438 NA non-coding downstream 16852 26909126 ~ 26909381 (-)
LOC122325367 NA non-coding downstream 168030 26750583 ~ 26758203 (-)
G142384 NA non-coding downstream 209524 26716192 ~ 26716709 (-)
G142464 NA non-coding upstream 99941 27040225 ~ 27093696 (-)
G142515 NA non-coding upstream 275348 27215632 ~ 27298876 (-)
G142520 slc25a11,LOC107560342,LOC107702890,LOC107752240,LOC107557769 non-coding upstream 335087 27275371 ~ 27276189 (-)
G142521 NA non-coding upstream 338636 27278920 ~ 27281441 (-)
G142529 NA non-coding upstream 393013 27333297 ~ 27333716 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other downstream 1246 26922815 ~ 26924987 (-)
rps29 NA other downstream 365846 26483321 ~ 26560387 (-)
G142278 NA other downstream 691988 26232024 ~ 26234245 (-)
G142281 NA other downstream 738314 26185660 ~ 26187919 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other downstream 829262 26088415 ~ 26096971 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other upstream 289519 27229803 ~ 27257482 (-)
tex55 LOC107560331,LOC107702887 other upstream 535810 27476094 ~ 27478227 (-)

Expression


Co-expression Network