G142520 (slc25a11,LOC107560342,LOC107702890,LOC107752240,LOC107557769)


Basic Information

Item Value
gene id G142520
gene name slc25a11,LOC107560342,LOC107702890,LOC107752240,LOC107557769
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27275371 ~ 27276189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU210570
TCAGCAGTCATTCGAATAAGCGCCACCTCTGCCGGAGTCCCAACAAACGCCCCCGTGGCCCCAGCAGTCATTCCTATTAAAGCCTTCATGAAGAAGTTAGGAGGTGTGCCGTCTGCTTTGGACATGCGCTCAAACAGGACCGTGTAGATGCCCAAACGGGTCGTGGTATAGGTAGCCTGCCTTAACAGACCCGCAGAAAGTCcggtGTAGATACCGCGGATGCCCTCGTTGCGGAGGATGCTGGTCACAGCATGGAAGCTGGTCTTGTATTCTCGAGCCTTGGAGCCCTGACCGCTCAGCTGCATTCGGTTCTTTACCAGGTCCAGGGGCTGCACAAACACAGTGGCGCCCATCCTGGAAACCAGAACGAATGAGTGTTAGTGAAATCAGTCTTGTATTAATCCTGAAGGAATCCTATTTACGTTAGCATCGGAAGCTGGAACCAATCAAaacatgcactgaaaaaaatacagaaaaggcTAGtaaatttcattaa

Function

symbol description
slc25a11 Predicted to enable C4-dicarboxylate transmembrane transporter activity; antiporter activity; and sulfur compound transmembrane transporter activity. Predicted to be involved in anion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in paraganglioma. Orthologous to human SLC25A11 (solute carrier family 25 member 11).

NR:

description
PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210570 True 496 lncRNA 0.50 2 27275371 27276189

Neighbor

gene id symbol gene type direction distance location
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding downstream 127326 27146476 ~ 27148045 (-)
her7 LOC107548512,LOC107662101,LOC107740036,LOC107556023,LOC107722746,LOC107702916 coding downstream 326476 26947330 ~ 26948895 (-)
ganaba zgc:171967,LOC107662060,LOC107702959,LOC107722752,LOC107548499,LOC108427707 coding downstream 335087 26926233 ~ 26940284 (-)
trnas-gcu_32 NA coding downstream 660641 26614643 ~ 26614730 (-)
LOC122325332 wdr20,LOC107730607,LOC107564583,LOC107704379 coding downstream 701358 26569767 ~ 26574013 (-)
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding upstream 60306 27336495 ~ 27339099 (-)
zgc:152816 LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252 coding upstream 111101 27387290 ~ 27404395 (-)
zgc:175280 zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433 coding upstream 133313 27409502 ~ 27418420 (-)
LOC122325363 slc25a5,LOC107378486,LOC108430428,LOC106515500 coding upstream 297674 27573863 ~ 27577372 (-)
LOC122325076 ebf2,LOC107712533,LOC107560327,LOC107683778,LOC107557760 coding upstream 309442 27585631 ~ 27602190 (-)
G142464 NA non-coding downstream 181675 27040225 ~ 27093696 (-)
G142440 LOC107397203 non-coding downstream 361090 26913969 ~ 26914281 (-)
G142439 LOC102197881 non-coding downstream 361513 26912869 ~ 26913858 (-)
G142438 NA non-coding downstream 365990 26909126 ~ 26909381 (-)
LOC122325367 NA non-coding downstream 517168 26750583 ~ 26758203 (-)
G142521 NA non-coding upstream 2731 27278920 ~ 27281441 (-)
G142529 NA non-coding upstream 57108 27333297 ~ 27333716 (-)
G142540 abhd10a,LOC107719764,LOC107662095,LOC107560335 non-coding upstream 99020 27375209 ~ 27377527 (-)
G142586 NA non-coding upstream 170287 27446476 ~ 27451221 (-)
G142606 NA non-coding upstream 178504 27454693 ~ 27454892 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other downstream 17889 27229803 ~ 27257482 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other downstream 350384 26922815 ~ 26924987 (-)
rps29 NA other downstream 714984 26483321 ~ 26560387 (-)
G142278 NA other downstream 1041126 26232024 ~ 26234245 (-)
G142281 NA other downstream 1087452 26185660 ~ 26187919 (-)
tex55 LOC107560331,LOC107702887 other upstream 199905 27476094 ~ 27478227 (-)

Expression


Co-expression Network