G142439 (LOC102197881)


Basic Information

Item Value
gene id G142439
gene name LOC102197881
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26912869 ~ 26913858 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU210467
cgacagtgtcgtcagcaaatttaatgatggtggtggagtttgtagtggccacacagtcatgtgtgtacagcgagtacagcagggggctcagaacacaaccctgaggggctccagtgctgagagtgagggaggatgaggtgtgttttcccatccgtacggcttgtggtctgtcggtcaggaagttggtgatccagtgacgcagggatgggctgagtcccaggacctccaacttcgaggtgagcgtggagggaactatggtgttgaacgctgaactatagtccacgaacagcattttcacatagttccctttcctaaaatccaggtggcttgtggttgtgtggaggaggtgtgtgatggcatcctccgtagaccggttttggcggtaagcaaactgtagtgggtcgagtgtgtccggtagtgatgcggtgatgaagtctctgacgagtctctcgaagcacttcatcactacagacgtcagagctacagggcggtaatcattaaggcaagatggttgaggtttcttcggcacaggaacaatgatggactctttgaaacacgaggggactacagactgtttcagggagagattaaatatctcagtgaacaccggtgctagctggtcagcacaggctctcagaacccgacctgtgatgccgtcaggtcctgctgccttcctggtgttcactctcctgaatgccctccttacgtcgtgctccgaaatggtgaacgcgatttcctctccggctctctcggccgtgcgtgctgttcatcatgccgctagcggcgctagcgtgattagcgtgattagctgcagcctcgaaacgagcataaaaggtgtttagctcgtctgccagagaagcatccgcgctctccactctggaggttggcgttttatagtccgtgatgtttctcagtccctgccaaaggctcctagagtcactgtgttgaaactgtgactcaagtttcctcccgtagcgcctctttgcctcc

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: lipoxygenase homology domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210467 True 990 lncRNA 0.53 1 26912869 26913858

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_32 NA coding downstream 298139 26614643 ~ 26614730 (-)
LOC122325332 wdr20,LOC107730607,LOC107564583,LOC107704379 coding downstream 338856 26569767 ~ 26574013 (-)
LOC122325425 mdga2,LOC107704381,LOC107556994,LOC108257548,LOC108411484,LOC106571582,LOC106608140 coding downstream 472946 26325231 ~ 26439923 (-)
LOC122325330 NA coding downstream 605057 26307401 ~ 26307812 (-)
LOC122325526 LOC107659807,LOC107756058,LOC107567392,LOC107713860,LOC107659806 coding downstream 610994 26299497 ~ 26301875 (-)
ganaba zgc:171967,LOC107662060,LOC107702959,LOC107722752,LOC107548499,LOC108427707 coding upstream 12375 26926233 ~ 26940284 (-)
her7 LOC107548512,LOC107662101,LOC107740036,LOC107556023,LOC107722746,LOC107702916 coding upstream 33472 26947330 ~ 26948895 (-)
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding upstream 232618 27146476 ~ 27148045 (-)
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding upstream 422637 27336495 ~ 27339099 (-)
zgc:152816 LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252 coding upstream 473432 27387290 ~ 27404395 (-)
G142438 NA non-coding downstream 3488 26909126 ~ 26909381 (-)
LOC122325367 NA non-coding downstream 154666 26750583 ~ 26758203 (-)
G142384 NA non-coding downstream 196160 26716192 ~ 26716709 (-)
G142381 NA non-coding downstream 237986 26674429 ~ 26674883 (-)
G142362 NA non-coding downstream 357316 26547188 ~ 26555553 (-)
G142440 LOC107397203 non-coding upstream 111 26913969 ~ 26914281 (-)
G142464 NA non-coding upstream 126367 27040225 ~ 27093696 (-)
G142515 NA non-coding upstream 301774 27215632 ~ 27298876 (-)
G142520 slc25a11,LOC107560342,LOC107702890,LOC107752240,LOC107557769 non-coding upstream 361513 27275371 ~ 27276189 (-)
G142521 NA non-coding upstream 365062 27278920 ~ 27281441 (-)
rps29 NA other downstream 352482 26483321 ~ 26560387 (-)
G142278 NA other downstream 678624 26232024 ~ 26234245 (-)
G142281 NA other downstream 724950 26185660 ~ 26187919 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other downstream 815898 26088415 ~ 26096971 (-)
LOC122324466 samd15 other downstream 858400 26050829 ~ 26054469 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other upstream 8957 26922815 ~ 26924987 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other upstream 315945 27229803 ~ 27257482 (-)
tex55 LOC107560331,LOC107702887 other upstream 562236 27476094 ~ 27478227 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G117322 NA non-coding NC_048566.1 CM023220.2 16789601 ~ 16800145 (+)
striped catfish (Pangasianodon hypophthalmus) G114350 NA non-coding NC_047601.1 CM018547.1 13538066 ~ 13540704 (+)