G114350


Basic Information

Item Value
gene id G114350
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13538066 ~ 13540704 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134975
GAaggagatgtatggatggagatgGACGATTCTTACTCCTTGGTGTTGTACTGGTTGAGGGCCCGAATGGCCTGCGGGAAGAAACTCTCCTCTCTGTATTGGCCTTTAGGGAGCAGAAGCGcttccctttttctttcagtatttTCCTGGCCTTGTTCCAGCACCACTTGCTGTAGATAGAGTGTAGGTCAGAGAGCTCTGTATGGATGGTAAGCTCAGCTGATCACACCGCCCTCTGTAGAGCCCTCCTGTCCTGCTGggtgctgttcccaaaccagACTGTAATGCTTCCCATCAGAATGCTCTCAATggtgcaggtgtaaaagttCCTTAGCTCCTTAGAGACCAGTTGAAAGTCTCTCAAGCATCTAAAGTGGTATAGACGCTGCCAGGCCTTCTTCATGGCAAGACCATGACAGGTCCTGCATGATGTGAAAACCAAGGTACCGGAAACTATCCACTCTCCTGCTGAAGTCCACAATCAGCTCTTTGGTCTTGCTGACATTCAGGAGGAGATTGTCCTCTTGGCACCAATGCTCCAGGCTTGTTATCTCCTCCAGGTAGGCCTTCTTGTTGTTGTCAGAGATCAGGCCCACCACGAAAGTGTCGTCAGCAAACTTAACAATGGTGGTAGAGCTGGAAGTGGGTACGCAGTCATATGTGTACAATGAGTACAGCAGAGGGCTCAGAACACAACCctgtggggctccagtgctgagAGTGAGGGAGGGTGAAACATGTTTGCCCACCCTTATTGCTTGTGGTCTGTCTGTGAGGAAGTTGGAGATCCACTGACACAGAGACGGGCTCACTTCCAGGTCCTCCAACTTGGTTGTGAGTTTGGAGGAAATTAGAGTGTTATATACCGAGCTGTAGTCAACAAAGAGCGTTTTCACATAATTCCCCTTCCCGGTGTCCAGATGGCTCAGGGTTGTGTGGAGGATGTATTGTATGGCCTCCTCTGTGGAGAGATTGGGACGGTATGCAAACTGTAGTGGGTCCAGTGTATCAGGTAATGAAGAAGTGATGAAGTCCCTGACCAGtctttcaaagcacttcatcacaacTGAGGTCAGGGCTACTGGGCAATAGTCACTGAGACAGGCAGGCTGGGGTTTCTTCAGAACAGGAACAATAATGGACTGCTTGACGCATGTGGGGATTGTCAACTGTTCCAGGGAAAGGTCGAATATCTCCGTGAACACCAGTGCTAGCTGGTCAGTGCAGGCTTTAAGGACCCAACCTGACATGCCTTCAGGTTCTGATACTTTCCTGGTGTTCACTCTCCTGAACGCCATCCTCACATCGTGCTCCAAGATGGTGAAAGCTTTTTCAGCTCTGTCACTCTCCGCATTCAAGCTGGCATTGGCACTGTTAGCACCATTAGTGCCGCTAGTGCCATTAGTTGCAGCCTTGAAATGAGCTTAGAAAGTGTTCAGCTCATCTGCAAGAGAAGCATCTGCATTCACCATGGAGGATGGTGTTTTGTAGTCCATTATTGTTCTCAATCCTTGCCATAGGCTCCTAGAATCACTCTGCTGGAACTGTGACTCTAGCTTCCTTCCATAGCGCTGCATCGCCTCCTTCACCGAAGGACGTAGCCCCTTGTTGTAGGCAGTGGTGTGAGATTTCAGAGTGTCACGTTGATGTCATCAGAGCTTTGCCGGAACATGTCCCAGTCTGCGTCACCCAGTGCATCCTGCAGAGTGGCCACTGATTGGCCCGTCCAGGGCGCGACCTCCCTCTGAACCGGAACTTCCTGTTTCAGCCTTTGTTTTTATCTAGGCATGAGGAAGGTGGCAGCATGGTCCGATTTCCCAAAAGGTGGCAGAGACTGCATTTTGTAGCTGTCTATGAATTGTGTGTAACAGTGGTCCAGTGTCCTTTCGCCCCTGGTGGGACAGGTGATATGGTGATATAAGTTTGGCACTGCGTGCTTGAGGTTGGCTCTGTTAAAGTTCCCCACCACAATGAGTGCAGCGTCTTGGTGAAAAGTTTGTTCCTGAGTGAGAGAATAATGCAGTTCACATAAGGCAGTGTCCGTTTCCGCTTGAGGTGGAATATAAATGGCGCTGACTATGACCAAGGTAAATTCCCGAGGAAGGTAGAAAGCATGACATTTGATGATCAGAAGTTCCAGATTGGGTGTGCAGGAGCAAGCGAGGGGAACAATGCTCGCACTGTCGCACCAGCTTCTGTTCACCATTATACACACTCCACCTCCCCTTGACTTCCCTGACTCAATTGTTCTGTCCATGCTGTAAATGCTTGTTCTGTCCATGCTGGATGGCGTGGTCCGGTACCGCTGGGTTCAGCCATGTTTCTGTCAAGCAGAGGAGGTTGTAGTCCTGAATGTCTGAGGTCGTCGAGCTTGTTTTCCAGACACTGGACGTTGGCTAGCAGGATGCTAGGCAGGGGAATGCGGTGTGCGTGAGCCCTCAGCCCGTTCCTGATGCCGGTTCGTTTTCCTCGGGGTCTCTGGCACGGGTCGCGTCCTTTGTTCTTCCTCAGGATCTCGGTAGGCCAGCTGGGATCCAGAGTTAAAAATGTCAGAAGGTGGGTGGCTTGTAACCAGTAGAAATAGGAGTATTCTTATCATGGCTAATAATGTCCATGGTGATGAGTAAAAGTGGTTAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134975 True 2639 lncRNA 0.50 1 13538066 13540704

Neighbor

gene id symbol gene type direction distance location
diaph2 diaph2 coding upstream 47531 13065904 ~ 13490535 (+)
trnae-cuc_17 NA coding upstream 207208 13330787 ~ 13330858 (+)
csnk1a1 csnk1a1,LOC106611977,LOC107593197,LOC107554841,LOC107742481,LOC106604944 coding upstream 1169829 12321258 ~ 12368237 (+)
sil1 sil1 coding upstream 1386902 12118308 ~ 12151164 (+)
fam199x fam199x coding upstream 1578038 11950411 ~ 11960028 (+)
tnmd tnmd coding downstream 576244 14116948 ~ 14158247 (+)
taf7 taf7l,taf7,LOC107724842,LOC107560442 coding downstream 677105 14217809 ~ 14230184 (+)
trnat-agu_9 NA coding downstream 879084 14419788 ~ 14419861 (+)
xkrx xkrx coding downstream 892463 14433167 ~ 14447796 (+)
nox1 nox1,LOC107680952,LOC107740188,LOC107593214,LOC107724830,LOC107688708 coding downstream 907807 14448511 ~ 14454573 (+)
G114349 NA non-coding upstream 1079 13536689 ~ 13536987 (+)
G114337 NA non-coding upstream 76988 13458698 ~ 13461078 (+)
G114334 NA non-coding upstream 152743 13378993 ~ 13385323 (+)
G114332 NA non-coding upstream 159120 13364703 ~ 13378946 (+)
G114330 NA non-coding upstream 222563 13315098 ~ 13315503 (+)
G114338 NA non-coding downstream 8551 13549255 ~ 13552447 (+)
G114339 NA non-coding downstream 18786 13559490 ~ 13560906 (+)
G114360 NA non-coding downstream 37484 13578188 ~ 13578830 (+)
G114361 NA non-coding downstream 40054 13580758 ~ 13581370 (+)
G114509 NA non-coding downstream 115382 13656086 ~ 13656336 (+)
LOC117597726 NA other upstream 823335 12708009 ~ 12714731 (+)
LOC113542746 NA other upstream 834072 12689634 ~ 12703994 (+)
st3gal5 st3gal5 other upstream 1269931 12181274 ~ 12268135 (+)
G113831 NA other upstream 1274804 12259423 ~ 12263262 (+)
sh2d1ab sh21a,sh2d1ab,LOC103038243,LOC107674868,LOC107572338,LOC108430899,LOC107564206,LOC107688592 other upstream 2648024 10887261 ~ 10890042 (+)
LOC113528743 LOC108268564,LOC102305317,LOC102211067,LOC102794790,LOC107740154 other downstream 693014 14233718 ~ 14245194 (+)
bcorl1 bcorl1 other downstream 934253 14474957 ~ 14512402 (+)
ablim3 ablim3,LOC108427857 other downstream 1401645 14942349 ~ 15012384 (+)
G115272 foxi3b,LOC108269392,LOC108427851,LOC103035522,LOC107752030,LOC107669071,LOC107743924,LOC107602562 other downstream 1510611 15051315 ~ 15053357 (+)
syce3 syce3 other downstream 1513380 15054084 ~ 15055490 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G142439 LOC102197881 non-coding NC_056718.1 CM032087.1 26912869 ~ 26913858 (-)