G142464


Basic Information

Item Value
gene id G142464
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27040225 ~ 27093696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU210500
TTGTTAacataattagttttattattttgtagctAATTTACAACAAGCATCTcactgaaattaaacatttgtataaTCCGATACTGTCATTGGTAAATCTCTCTTTTaagataaatcatttaaatatactttgcATCAGATGGCATTGttgtattttcataattattctttttttttttaaaataaaagcaatatgtTCAATCTGTTCAGGATAATTAGAATAATATGTTATGGCAAATACAAATcgataaaatacatttgattctttcaaataaataaataaataaattcaactCATAATTCATTCTAGTAAGAGTGAAATCGTATATTTCTCTTGgtaatatattgtatgtgtgtgtgtgtgtgtgtgcgtgtgcacaTCTGTGCAGCTCATACAAACCGATAatatacactattttttttatatttttatttctcttgtgGCCAATAATATGATTTGGGAAATTTATTTATGGGCCATGTTTATAAAAGTATCAGTATGTGTAATGCGtgcaattttagtttttttttttcttttctttttttttaattattattattattattattattattattaatttcacagtaaagtgtaatttttagtttcagttttcaCATTTGATTGTGTGCAGCTCCACTTTGGAAACCACAGCAAAAGCGTCTCAGTCTTCACACGAAACCCCGATGTAAACAAAGCAGTAAACaactaaataattatataaaatctataaataaaaataacagcaagaAAATAACTGTCACTGCACTCCAAACACACTTAAATATCGAAATTCAAACGCAAAAAGTCAAAAGAAAATAAGTGAAAGTAAACAAGCCACCAGATCGCTCGGTGTTCCTCTGCTTTCTACCAGAAACCCTCCGTTGTTCATCACGTCTGATCAAATCTTCCCTTTAATAAGTGCAAATGTGTTTCGCTTCATCTTCTtactagactttttttttggcctgACACAAACGGTGCCAGTTTTTTCGATCACAATAGTCTCAATCGAAGTCTGTTTCCATAAATCAGCACAGTAATGCTCATGGCGTTGATTTACAGGAAATTTCTCTAACTCAAACGCAAAGCCCTGGATGGCGTTCTGGACAAACCGTCGTTTTCATCCTCACTTTAGACCTTGAATATGACGCCCTCTGAGCTCAAAGCACCGTATTGATTCTTACCGCATCGCTGTCACGGCAcaaaagggtaaaaaaaaaaaaacaaaagccaaTTTATCATTCTGCCATTTTCATGTCGGCCAGGGCTGAAGTGGGCGCTTTGTCAACGCTCACAGAATTACGGGTAAAATTGTTTATAAACGAGTGTTTCACTCTGAGAAGGATAATTAGTTGGAGGCAGGCTTGGATTGTTAAACTTAGCTAGCTAAGCTGATTATTTTCTGGCATTACAGCCATTAATTTATCTCATCAAGCATAATGAACCCACGATCGTATTCCAATAAAACCCCAGCATCATTAAGACCCGATCCTCTTCACTCCGGTGACGGCAGCGTCATCGACCCACCAGTTAACTGGTGCGATGATGGCCACTGACTGGCCGTCGAGATGCATCAAAGTAGCCTCATTGCTCTGATTACAAGAGTTAATTATAATCTGTTACACAGCATAAAAAACTTTGTACAATACACCATTTTCCTGATAgtatttgtgtgcgtgtgtgtctgtgcgagtgtgtgtgtgtccagacaGTTTAGAGATGGGCTGAATGAAAGGCCAGTAAAGCTACGTTCACATTGCAGCTGAATGGGGCAAACGAAAAATCACATTGAATTCGACTCTGATCCAACTACGATTTTTCTGGAGCCATGTGACTGTTCACTCTGGAGTCACAGAAAAATGACATGACGTTGCCCATTTATCAGCTCCATCTAATGGGCAAACATAACTATTTCGCAAGGAGGCAATTTTGTATGAATTCATACGATTTAGGTGGTACAAAAACGTacgttatttttttgttattagacAAAAGCAGAAAGCTCTACTCCTAAAcattcaccctaaaatgaaaacgcAGTCATTAATTAATTGTGTCGGAtgatctttgttcatcttcggaacacaatttaacatatttttgatgaattctgagaTAGATAGCAATGCAACTGcaatgttcccaggtccagaaatatGGCAAACAGTCAATTCTTGTCCCCCGACTTACCATCttccgccattttggagagtgcCCCAGAACGTTATCACATCATATCATCAAGCGTTGGTTTATGTTCAGGATAAAGAGCGTACATGCTGAATGTAAACCACACCGATTACGTTCAGTGGATACTTACCAAAATGGCAGAAGGCTGTAACTTAGGAAGAAGAACTGttgaaaaaattatgtatttatttttcgagcacaaaaagtattctcataacTTGATAAaactgaaccactgatgtcactgGGAACGTTGCAGATCATCATTAGTATctaaatttgtgttctgaaaatgaacGAAAATCTTCCGGGgttttggaatggcatgagggcgagtaattttGGATCTCGCGAAACTGTATGAACGGGTCGCTACGAATTCATACAAAGTAGCCACCAATtcaccaaaacataaaatagttaCAAATTCAAATACGTACACTGTCCCAATGCCTTCACCAACACCGATCCTGAGATTATATGAGAAAAACGTTCTCCAATAAAAGGgcacaaacaaaacatctaCTATTCTACAATGAAATATTTGAGATTTAAATCATTTCGAAGTTATATCTCATCAAAATAAGCTACTACTTGTCATATGATGCTTGGTTTACCTTTGCTGTGAAAAAGACAGAATAGTGAAAACAACCACTGGCTATGAAGGAAGGCAAGgtgttaaagaaataaataaataaataaataattaaatatcccAATATAATTACTGAATATAtcatttatagtatttttttacaaattcatttaaattatatttatatatataggattgCTGGATTGTTGTGTGAACGTAGCCACTCAGCACATGAGTGTGAAATTAACTGAAATCCTGTTTTAAAAAACAGCGAAACTTTTACATTAGAAGCGGTTTGATAATTTACCGATGACTTCAAGATCTAAGCATGGCAAAAATTTGTTACATTATGAGAAGATTATGGAAGAGCCCGATATTGCACATTAAAGAGCAGCCTGGAGTCATTGTGTTTGAGAGCTGTGGCGCTCAGGGAAATAATCCAACCGAGCAAATAAATTTCAGCTCAAAGGAAAACATCAATCTGGCTGTTGCAAGAAGATCCAGACAGAAGGCGGCAAACATTACAAAATCTATGTTGCCGTGGTGTCTAAATGGGCATGTTTACATGTAAGCGCaagaaaatcaaagaaaacaGACACCGGAATATGAAGCGTGTGGCTTTCTGTGATGTGCAGAATGAAAGTCACAGTCTGCGTCTTCCCATTTTCCTTCCTCATTATCCGTTCAATGTGATGAACTAGCTGCAAACTATTTAAGGGGAACATTCGAAGGACTGAGGCAAACGTTTTAGTTGCGCCAGCTCGGTGCTTCCTGCATTTCAGGAAGCACTCGTCAAGCACTTCAAATTTCTAAAAGGAATTAAACGCCCTTGATGCTGATAACTGTGGGTGAAGTCAGTCTCTGAGTAGTCGTAATATCTTTGATATTGAAGATTTCAGCGCATTATTGATACCGATAAATATACTTTCAGTTCAATTTTCCTTTAGTACTGTAAAACGAGCTCCTTTAATCAGGAATAGCTCTTGAACGTCTCATTCCAGTAAAAGCCAAGGCAGTCGCTCATCTCTCTCCACTTCCTGTCTTGTtcggagagagcgagagggaaTCTGACAATATACAAAATTTCTTTGTAGCATCCCAGTTCTTGACAGAGTAAAAACAGCTCACCATTCCTGTGTGAAAGGACGTTATTCAGAGAGAAAGccagaaagaaacagagaaggACTGAGAGAAAGGCAGAGTGAGGAagttaaaagcagaaaaaggaAGTTACAAAGCTaggaaaaggaggaaaagagaGGCAGATGCGGTGTGGCCAGCTCCTGTGCTGTTCCACTCCATCATTTCCTGGTGTCTCTGTGACTTCTCCCCCTCGCTTTCACTCTttccatctctccctctctctctctgtctgtttctcgCGAGCTCTACGAGTCGGAGCTCCACAGTCCAGGGCAGGCAGGCCAAATGGTGACTGGGCGAGGTGGTTTGGCTCTGGGTGGATTCTCACAGACGCTCCCTTGTGGGAATCCAGATGTAAGGCCCTGACTGCTCCTCGATCACAGTTTTCACCTTATGATAAACCTCCTCGAAGCTGTCGCCCTCCACGATAGCTGCGATACAGAAAAAGAATAGCTGCAACGGTCAAAAGAATTGCAAAAACTGTACCTACAACCTTTAACTATGGC
>TU210502
TTGTTAacataattagttttattattttgtagctAATTTACAACAAGCATCTcactgaaattaaacatttgtataaTCCGATACTGTCATTGGTAAATCTCTCTTTTaagataaatcatttaaatatactttgcATCAGATGGCATTGttgtattttcataattattctttttttttttaaaataaaagcaatatgtTCAATCTGTTCAGGATAATTAGAATAATATGTTATGGCAAATACAAATcgataaaatacatttgattctttcaaataaataaataaataaattcaactCATAATTCATTCTAGTAAGAGTGAAATCGTATATTTCTCTTGgtaatatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210500 True 4438 lncRNA 0.38 2 27089212 27093696
TU210502 False 382 lncRNA 0.25 2 27040225 27093696

Neighbor

gene id symbol gene type direction distance location
her7 LOC107548512,LOC107662101,LOC107740036,LOC107556023,LOC107722746,LOC107702916 coding downstream 91330 26947330 ~ 26948895 (-)
ganaba zgc:171967,LOC107662060,LOC107702959,LOC107722752,LOC107548499,LOC108427707 coding downstream 99941 26926233 ~ 26940284 (-)
trnas-gcu_32 NA coding downstream 425495 26614643 ~ 26614730 (-)
LOC122325332 wdr20,LOC107730607,LOC107564583,LOC107704379 coding downstream 466212 26569767 ~ 26574013 (-)
LOC122325425 mdga2,LOC107704381,LOC107556994,LOC108257548,LOC108411484,LOC106571582,LOC106608140 coding downstream 600302 26325231 ~ 26439923 (-)
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding upstream 52780 27146476 ~ 27148045 (-)
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding upstream 242799 27336495 ~ 27339099 (-)
zgc:152816 LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252 coding upstream 293594 27387290 ~ 27404395 (-)
zgc:175280 zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433 coding upstream 315806 27409502 ~ 27418420 (-)
LOC122325363 slc25a5,LOC107378486,LOC108430428,LOC106515500 coding upstream 480167 27573863 ~ 27577372 (-)
G142440 LOC107397203 non-coding downstream 125944 26913969 ~ 26914281 (-)
G142439 LOC102197881 non-coding downstream 126367 26912869 ~ 26913858 (-)
G142438 NA non-coding downstream 130844 26909126 ~ 26909381 (-)
LOC122325367 NA non-coding downstream 282022 26750583 ~ 26758203 (-)
G142384 NA non-coding downstream 323516 26716192 ~ 26716709 (-)
G142515 NA non-coding upstream 121936 27215632 ~ 27298876 (-)
G142520 slc25a11,LOC107560342,LOC107702890,LOC107752240,LOC107557769 non-coding upstream 181675 27275371 ~ 27276189 (-)
G142521 NA non-coding upstream 185224 27278920 ~ 27281441 (-)
G142529 NA non-coding upstream 239601 27333297 ~ 27333716 (-)
G142540 abhd10a,LOC107719764,LOC107662095,LOC107560335 non-coding upstream 281513 27375209 ~ 27377527 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other downstream 115238 26922815 ~ 26924987 (-)
rps29 NA other downstream 479838 26483321 ~ 26560387 (-)
G142278 NA other downstream 805980 26232024 ~ 26234245 (-)
G142281 NA other downstream 852306 26185660 ~ 26187919 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other downstream 943254 26088415 ~ 26096971 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other upstream 136107 27229803 ~ 27257482 (-)
tex55 LOC107560331,LOC107702887 other upstream 382398 27476094 ~ 27478227 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G255269 NA non-coding CI01000059 null 6889624 ~ 6996204 (+)