RNA id: TU210500


Basic Information

Item Value
RNA id TU210500
length 4438
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G142464
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27040225 ~ 27093696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTAacataattagttttattattttgtagctAATTTACAACAAGCATCTcactgaaattaaacatttgtataaTCCGATACTGTCATTGGTAAATCTCTCTTTTaagataaatcatttaaatatactttgcATCAGATGGCATTGttgtattttcataattattctttttttttttaaaataaaagcaatatgtTCAATCTGTTCAGGATAATTAGAATAATATGTTATGGCAAATACAAATcgataaaatacatttgattctttcaaataaataaataaataaattcaactCATAATTCATTCTAGTAAGAGTGAAATCGTATATTTCTCTTGgtaatatattgtatgtgtgtgtgtgtgtgtgtgcgtgtgcacaTCTGTGCAGCTCATACAAACCGATAatatacactattttttttatatttttatttctcttgtgGCCAATAATATGATTTGGGAAATTTATTTATGGGCCATGTTTATAAAAGTATCAGTATGTGTAATGCGtgcaattttagtttttttttttcttttctttttttttaattattattattattattattattattattaatttcacagtaaagtgtaatttttagtttcagttttcaCATTTGATTGTGTGCAGCTCCACTTTGGAAACCACAGCAAAAGCGTCTCAGTCTTCACACGAAACCCCGATGTAAACAAAGCAGTAAACaactaaataattatataaaatctataaataaaaataacagcaagaAAATAACTGTCACTGCACTCCAAACACACTTAAATATCGAAATTCAAACGCAAAAAGTCAAAAGAAAATAAGTGAAAGTAAACAAGCCACCAGATCGCTCGGTGTTCCTCTGCTTTCTACCAGAAACCCTCCGTTGTTCATCACGTCTGATCAAATCTTCCCTTTAATAAGTGCAAATGTGTTTCGCTTCATCTTCTtactagactttttttttggcctgACACAAACGGTGCCAGTTTTTTCGATCACAATAGTCTCAATCGAAGTCTGTTTCCATAAATCAGCACAGTAATGCTCATGGCGTTGATTTACAGGAAATTTCTCTAACTCAAACGCAAAGCCCTGGATGGCGTTCTGGACAAACCGTCGTTTTCATCCTCACTTTAGACCTTGAATATGACGCCCTCTGAGCTCAAAGCACCGTATTGATTCTTACCGCATCGCTGTCACGGCAcaaaagggtaaaaaaaaaaaaacaaaagccaaTTTATCATTCTGCCATTTTCATGTCGGCCAGGGCTGAAGTGGGCGCTTTGTCAACGCTCACAGAATTACGGGTAAAATTGTTTATAAACGAGTGTTTCACTCTGAGAAGGATAATTAGTTGGAGGCAGGCTTGGATTGTTAAACTTAGCTAGCTAAGCTGATTATTTTCTGGCATTACAGCCATTAATTTATCTCATCAAGCATAATGAACCCACGATCGTATTCCAATAAAACCCCAGCATCATTAAGACCCGATCCTCTTCACTCCGGTGACGGCAGCGTCATCGACCCACCAGTTAACTGGTGCGATGATGGCCACTGACTGGCCGTCGAGATGCATCAAAGTAGCCTCATTGCTCTGATTACAAGAGTTAATTATAATCTGTTACACAGCATAAAAAACTTTGTACAATACACCATTTTCCTGATAgtatttgtgtgcgtgtgtgtctgtgcgagtgtgtgtgtgtccagacaGTTTAGAGATGGGCTGAATGAAAGGCCAGTAAAGCTACGTTCACATTGCAGCTGAATGGGGCAAACGAAAAATCACATTGAATTCGACTCTGATCCAACTACGATTTTTCTGGAGCCATGTGACTGTTCACTCTGGAGTCACAGAAAAATGACATGACGTTGCCCATTTATCAGCTCCATCTAATGGGCAAACATAACTATTTCGCAAGGAGGCAATTTTGTATGAATTCATACGATTTAGGTGGTACAAAAACGTacgttatttttttgttattagacAAAAGCAGAAAGCTCTACTCCTAAAcattcaccctaaaatgaaaacgcAGTCATTAATTAATTGTGTCGGAtgatctttgttcatcttcggaacacaatttaacatatttttgatgaattctgagaTAGATAGCAATGCAACTGcaatgttcccaggtccagaaatatGGCAAACAGTCAATTCTTGTCCCCCGACTTACCATCttccgccattttggagagtgcCCCAGAACGTTATCACATCATATCATCAAGCGTTGGTTTATGTTCAGGATAAAGAGCGTACATGCTGAATGTAAACCACACCGATTACGTTCAGTGGATACTTACCAAAATGGCAGAAGGCTGTAACTTAGGAAGAAGAACTGttgaaaaaattatgtatttatttttcgagcacaaaaagtattctcataacTTGATAAaactgaaccactgatgtcactgGGAACGTTGCAGATCATCATTAGTATctaaatttgtgttctgaaaatgaacGAAAATCTTCCGGGgttttggaatggcatgagggcgagtaattttGGATCTCGCGAAACTGTATGAACGGGTCGCTACGAATTCATACAAAGTAGCCACCAATtcaccaaaacataaaatagttaCAAATTCAAATACGTACACTGTCCCAATGCCTTCACCAACACCGATCCTGAGATTATATGAGAAAAACGTTCTCCAATAAAAGGgcacaaacaaaacatctaCTATTCTACAATGAAATATTTGAGATTTAAATCATTTCGAAGTTATATCTCATCAAAATAAGCTACTACTTGTCATATGATGCTTGGTTTACCTTTGCTGTGAAAAAGACAGAATAGTGAAAACAACCACTGGCTATGAAGGAAGGCAAGgtgttaaagaaataaataaataaataaataattaaatatcccAATATAATTACTGAATATAtcatttatagtatttttttacaaattcatttaaattatatttatatatataggattgCTGGATTGTTGTGTGAACGTAGCCACTCAGCACATGAGTGTGAAATTAACTGAAATCCTGTTTTAAAAAACAGCGAAACTTTTACATTAGAAGCGGTTTGATAATTTACCGATGACTTCAAGATCTAAGCATGGCAAAAATTTGTTACATTATGAGAAGATTATGGAAGAGCCCGATATTGCACATTAAAGAGCAGCCTGGAGTCATTGTGTTTGAGAGCTGTGGCGCTCAGGGAAATAATCCAACCGAGCAAATAAATTTCAGCTCAAAGGAAAACATCAATCTGGCTGTTGCAAGAAGATCCAGACAGAAGGCGGCAAACATTACAAAATCTATGTTGCCGTGGTGTCTAAATGGGCATGTTTACATGTAAGCGCaagaaaatcaaagaaaacaGACACCGGAATATGAAGCGTGTGGCTTTCTGTGATGTGCAGAATGAAAGTCACAGTCTGCGTCTTCCCATTTTCCTTCCTCATTATCCGTTCAATGTGATGAACTAGCTGCAAACTATTTAAGGGGAACATTCGAAGGACTGAGGCAAACGTTTTAGTTGCGCCAGCTCGGTGCTTCCTGCATTTCAGGAAGCACTCGTCAAGCACTTCAAATTTCTAAAAGGAATTAAACGCCCTTGATGCTGATAACTGTGGGTGAAGTCAGTCTCTGAGTAGTCGTAATATCTTTGATATTGAAGATTTCAGCGCATTATTGATACCGATAAATATACTTTCAGTTCAATTTTCCTTTAGTACTGTAAAACGAGCTCCTTTAATCAGGAATAGCTCTTGAACGTCTCATTCCAGTAAAAGCCAAGGCAGTCGCTCATCTCTCTCCACTTCCTGTCTTGTtcggagagagcgagagggaaTCTGACAATATACAAAATTTCTTTGTAGCATCCCAGTTCTTGACAGAGTAAAAACAGCTCACCATTCCTGTGTGAAAGGACGTTATTCAGAGAGAAAGccagaaagaaacagagaaggACTGAGAGAAAGGCAGAGTGAGGAagttaaaagcagaaaaaggaAGTTACAAAGCTaggaaaaggaggaaaagagaGGCAGATGCGGTGTGGCCAGCTCCTGTGCTGTTCCACTCCATCATTTCCTGGTGTCTCTGTGACTTCTCCCCCTCGCTTTCACTCTttccatctctccctctctctctctgtctgtttctcgCGAGCTCTACGAGTCGGAGCTCCACAGTCCAGGGCAGGCAGGCCAAATGGTGACTGGGCGAGGTGGTTTGGCTCTGGGTGGATTCTCACAGACGCTCCCTTGTGGGAATCCAGATGTAAGGCCCTGACTGCTCCTCGATCACAGTTTTCACCTTATGATAAACCTCCTCGAAGCTGTCGCCCTCCACGATAGCTGCGATACAGAAAAAGAATAGCTGCAACGGTCAAAAGAATTGCAAAAACTGTACCTACAACCTTTAACTATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210468 lncRNA downstream 174931 26913969 ~ 26914281 (-) True G142440
TU210467 lncRNA downstream 175354 26912869 ~ 26913858 (-) True G142439
TU210466 lncRNA downstream 179831 26909126 ~ 26909381 (-) True G142438
XR_006247290.1 lncRNA downstream 331009 26757053 ~ 26758203 (-) True LOC122325367
TU210565 lncRNA upstream 121936 27215632 ~ 27298876 (-) True G142515
TU210570 lncRNA upstream 181675 27275371 ~ 27276189 (-) True G142520
TU210571 lncRNA upstream 185224 27278920 ~ 27281441 (-) True G142521
TU210583 lncRNA upstream 239601 27333297 ~ 27333716 (-) True G142529
TU210596 lncRNA upstream 281513 27375209 ~ 27377527 (-) True G142540
XM_043220055.1 mRNA downstream 140317 26947330 ~ 26948895 (-) True her7
XM_043219305.1 mRNA downstream 148928 26926233 ~ 26940284 (-) True ganaba
XM_043220347.1 mRNA downstream 515199 26569767 ~ 26574013 (-) True LOC122325332
XM_043218675.1 mRNA downstream 528825 26558946 ~ 26560387 (-) False rps29
XM_043220472.1 mRNA downstream 649291 26325231 ~ 26439921 (-) False LOC122325425
XM_043220045.1 mRNA upstream 52780 27146476 ~ 27148045 (-) True LOC122325133
XM_043220349.1 mRNA upstream 136963 27230659 ~ 27257482 (-) True LOC122325335
XM_043220003.1 mRNA upstream 242799 27336495 ~ 27339099 (-) False mtif3
XM_043220005.1 mRNA upstream 242799 27336495 ~ 27339087 (-) True mtif3
XM_043220004.1 mRNA upstream 242799 27336495 ~ 27339082 (-) False mtif3
TU210476 other downstream 164225 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 474482 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 854967 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 901293 26185660 ~ 26187919 (-) True G142281
XR_006247173.1 other downstream 992241 26088415 ~ 26096971 (-) True pgfa
TU210568 other upstream 136107 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU289720 True 4320 lncRNA 0.40 3 CI01000059 6978616 ~ 6983296 (+)