RNA id: XM_043220349.1


Basic Information

Item Value
RNA id XM_043220349.1
length 6377
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC122325335
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27229803 ~ 27257482 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagggtggggGATCACAGAGGGTTTCATTGGGTTCTGAGTTGGCAGTCTCTTGTTTGATGGCTCTGTCGTTCTGAACGGATGCACAATTCCCTCCACATCTCCACCGACAGTCTTTCGTCGCCGAACCGCCTTCACGATGCGACACACCGGCTGCTCCAGTGAGATCTGACGATGGAATATGGACACCGCGGAGCTGTCAAACTCTCTTTTGATCGCGTGCGATGATCACCATGGCAATAATTGCGCGCCAGAAAAACAGCGCGACGTTTGCTGCCGTGCGTCGAGCGCGTGAGGGTGCGCGGTGTGTCAGATAGTGACCGTCACCAACCTAAGCGCGTGAAGGAGCGATCGTGTGTTCGTGCGGCTGTGGACGAGGAGATGGGCAGACGCGCGTGAACGCAAGCGTGCGCGTATACGGCGCGTCCCTGCAGTCGCGTTCGACCGCCGCGTAGCTGGGCTTCGGTGCCATTAGGTGAAGCGGCGCCGGCTGTTGCGCATCCAGTCAGTGGAAGCCCGGTGTGGATGGGTGGTTCCGCATTTTGAGGAGGTCCCCCGCCTCGCACAGAGAGACCACCCCGATTCTGCAGAGGAATGCCTCAACACGGAGAGGAGCGTCTTCAAGTTGCGTCGATCCGGGTATTGGAGAAGTGCAGCGGGCGACTGCATAGACAGACTGTTCACGCAGCGGCACACTAAAGGCCTGGACAGCGGCCAGTCGTGACTTTTTGCCTGGCGACATAAACACGCACCCCACCGCGTCAGGGTTGCGTTTGGACGCGCGCCCTCCTGGCAACAGCTGCAAGTTGGTGCCAGCAGGTGCAAGACCTGATTTGAGCGCAGGTTTGCCCTGTGCatccatctatttatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctaatcagGCGCTCCTTTAAACATCTTTGTTGTTACCACACCAAAAGTGATTCAGTTTAATAAACTCGAACACACGCAAGTGTCACAAGTGTGTGAGGATGCAGGTCTCGTTCGCTTGTACGGAGCACAATCTGAAGAGCCGCAGCGAGGACCGGCTGTGCGGCCTGCGAACTGCCCCTCCACAAGGGGGCAGCAGCAGCGGAGGGGGAGGAGGTGGAGgcggcggaggaggaggagagagggggAGCGGACAGGGGGGGAACGGCAACTACGCCCCTCAGAGCTCGGTCAAAACACGGGACGCGGCGGGGTCCCGACCCCTGCCCCAAGGCCACGCCCACATGAAGGAGGCTATTGGACGTCACAGTAGCATGAAATACAGAAACCTTGGAAAGTCGGGGCTACGTGTTTCCTGCTTGGGTCTTGGTACCTGGGTGACATTTGGATCTCAGATCTCCGATGAGATGGCGGAGAGTCTGATGACTATAGCCTATGAGAATGGAGTGAATCTGTTCGACACGGCAGAAGTGTACGCTTCAGGCAGGGCTGAAATCACTCTAGGGAACATCATCAAAAAGAAAGGCTGGAGacggTCCAGTTATGTAGTAACGACTAAGATCTACTGGGGAGGACAggcagagacagagagaggcctGTCCAGAAAACACATCATCGAAGGTCTCAGAGGTTCCCTGTCTAGACTACAGCTGGATTACGTGGATATTGTCTTTGCCAACCGAAGCGATGTGAACAGCCCTATGGAAGAGGTAGTGCGTGCGATGACATTTGTTATAAACCAGGGTATGGCCATGTACTGGGGCACGTCACGCTGGAGCGCCATGGAGATCATGgAGGCATACTCTGTAGCGAGGCAGTTTAATTTAATCCCACCGGTATGCGAGCAGGCCGAGTATCACTATTTCCAGAGGGATAAGGTCGAGGTGCAGCTGCCAGAGCTCTACCACAAGATCGGTGTTGGAGCGATGACCTGGTCTCCTCTCGCATGCGGACTGATCACTGGAAAATACAGTGACGGTGTTCCAGACTGTTCAAGAGCCGCCATGAAAGGCTATCAGTGGCTAAAGGAGCGAGTGTACAGTGAAGAAGGGCGCAGACAGCTGGCAAAAATAAAAGAGCTCCACCTGGTGGCTGACCGGCTGGGCTGCACGGCTGCTCAGCTCGCCATTGCGTGGTGTTTGCGTAGTGAAGGGGTCAGTTCTGTACTTCTTGGTGTCTCCAATACAGACCAGCTTCTTGAGAACCTTGGAGCCCTGcggGTGCTGTCTCAGATGACGCCTCAGACTGTGAGCGAGATAGATGCTCTCCTGGGCAACAAACCGCACTCCAAGAAAGAGTCACGTGCGTGAGGGAACCAGAGAGATGACATGAACATGTGCAgccagaaaagaaaaagaaagcaagggGGAAAAGATGGAACACGGCGTACCATCGCTTTTCTGCTCTCCCGTATATTACAACACCTGCATGCCTTCTGCAACATGCTTCCAGCCCATACCGCACTGCTCTCTGTAACCCTACTCAAGTATCCGAACATATCCTACCAATTAAACAAGGAAACGGCTGTGCGCAACGTCACAGAAACGCAACGAACAACGGCTGTTTTCGTTTCTTTACTCTAAGAGGCTGAAGTGACAGCCTTCCACGAGGAGGCACTGTCGGTTGTCGGAGGAGAATGGAATGAAAGTGGCAAAAGACTTGTTTATTAGCTGACCCAGACCGAATCTGCAGACTGTTTCCACTGCTGAATTTTCGTTGCCAAATTCCGCGAAGAGTCGAGCTGAGAGTGGTATATTCTTATTGGCAGCTGAAGTCAAATTtgccaaaatatttattaaacaaacatgcaCGGGGAAGGGGGAAAGATGATTAGCTGGACTTTGCAAATCGTTGGCGTTCTGCGGAAATCCGCACGGGCCTGGTCGAGTACGTGTGCATGCAGTGACGCTTTGAATCAAACTCTCCGTCGCTGGTGTTGCACCTGAGTGACTCGGAAAATGGATGCTGTGTGACGCCAAGCGAAGATGTTTCTGAGAGCTGCCCGTCCCGTTGGTTTGGGGTGTTCACTGCCTGTCACATTTCATTCTCGCTGCGCAGGAGAGCGTGGCAAACACTCCGGCGTGTGACAGGAACAACATGCAGCAACTGCAAACAGCTGTTTGGACACATCACAAGTCTTCCTCCATTTCCCTCCTTTCCATCTCTCCTTGTGTTTACAACGGTGCacctgtccctttaagagaaTTTGTGCAGTCAGGGGAGTGGTGTGTGAGCGTGTATGTGGTACCTTGGAAAAATATTCAGACTCTCGctgatttacttttttaaaaacaactggtTATAATTGCTATTCCTAACAAACAACCTAAACTAATAACCATAAACCATAACCAATCCTGCCCTGTCAGAAAAAAAGGATACCTATAGGGGAGGCAGAACCCTTAAAGAgacacttttgtacctttgtTACCCCTAAGGGATTAAAAATAGTACCCTAAGAATACACATTACtgtcttaaagggttactccatcccaaaataaaaattttgacaTTCATTCAGATGACTGGGGGTAAgtgacaaaattttaattttggggtgaaaagagttatattaaaaaaatataagcttAAAGGGTTCCCGATATTCACCCTGTGGAGGTTAAGAAGGTacaaaaatgttgctttgagGGTTCTGCCCCAGAGACAAGCTGTTGCTCCCCTAAAGGTACAAATtgtgcactttatttatttagatcgCTCTCTGTTTGTGCAGGAAGCAGGAAAGATACCTCAAATCGTGCAGCTTGTTTAAAAGggattttaattacaaaaacaggGAAGAGTATCTCTAGGCTTGCGAATTGAGCCACATTTAGGGACCAGAATATCATTGTCAAAGTCCATAACCATGTCCTGAACCTAGTATTAATAGCTTCgaaagatttctgaatgataatagtctttttatataacaattgAAATGAATGGGGAATATGGAAGTATGAAGAACAGTAAAAGAACAAGAATATTTCAAACACGCTTACAATGTTGAAAATGCAAAGCTGAGAAATATTTCTGATCTCATCATAACTGATTATGCATTACACGAATCAGAGAGATTTTCGAAgcataaatgaaacatttagttTGCATCACTGGATATTACTGTTGATTACTGTTGATTGTCAGATATGATATGTtaagataaataaacagatacaaaaaattaaacatgcacatgcaaattttaacattaagatctataaaatgcatttagaaaaaaaacaaaaaacaaaaacaaggacGCTGTTTTTTGTAGAGCCATCTTTGCAGCAATGATAGCTTTCAGATTTCTTCGGAGTATGAATGCATGAACGCACTGTCCAGATgtcattttagctttttttccagGCAGATTTGCTCCAGGTTGTTTGAGATTAGTCAGATGTTCTTTCTGCATTACAATGTTCCAATAGTGCCACAGATTGTGACGTCAGTTTTATAACTGTGCCATTTCAGGACATTCAGCTCTCTGTTCTTCAGCTAATGTCCTGCTCGACGAGCTTTCTCTGAAGCTTCGGCAGTTTTATAAAATTTCTACGAATATATTCTTATTCTTTAAGTTTTATATCCTGTATTGAATTAGAGTATTTAGGAATAATTGAAAGAACTTCTGCACTAGTATCAGCACCAAATGGAAGCGCAATCTGTTTGAGAAGTCTGCCCGGGCCAGATATAGCAACGGACCGTTTGCTTGAATAATGGCAGGCAAAAAAagaatcaaaccaaaaaaaaatcattcttttttcaaaatcagTTTTGCGTGAGATCCTTCACCTTCGTGTGCAGGTTTTGCATTAGTTATCATTTGTGAATCGGGTCGTGGTCTGAATACTTTTGCTAGGCATCATATGCGTGGGGCTTGGCTTCAGCGGTCAGCATCCTTTGCACTAAGTGGACAGAGTCATAATTTAAAGATCGTAGTTCACAAATAGTCATGAAGGTCATAGGTTAACATGACCAGAGAACTGTGCTAGTATTGCTTTGTGTGTTTGACAAATACAAGCTGCGTCAGTGACAATGAAAAGCGAAGCgcttcacttttaaaaatgtgttcgtGTCATTCCATGATTTCAGATCGAAGGACACAGATTGGCTAGATTGAGTGACTACTGTCAATTTCCCATCAGCCATTGCTGAACATCACGGTGTGCGGTGCCTCAGAACGTGGTTCATAACTCCACTTGTTCCATAACCCAGTTACCACAGAAAATCATTAggagaaaaatacaaatgttgtttacagtaatgcatttacaatgaaCGTCTAAGGGGCAAGTGCACCGTGCGGTTTAAAGCTGAAATGCGAAGCTATATACTTTGCACACTGGCTTTGTGTCTAGTCTTGTGGTTACACTTTTCAAATTGCATTTTAGCGTTTATAACAGTGCAGCGCCTTGCCCCATGGATTTCCATTAATGCACGTGTGTTACTGTAAATGGTTTTTGTTTATACAAACTAACGCTTAAGATATTTTCTGCAGTAAATGACACGGTGAGCTATTCTTTTAACTCTACCGAACCCaggcaaaaaaaactaacagaTTTAGTTCAGCACAATAAACAGGCACAAACAGAATTAAACCCTTTATATTAAACCAAATTCTTTTTTAACAATAAGTGTAATATTAGTTGCGTCGGAGAAACCCAGACTTGGCAACGCTAGCACGATTCACTGTTTGTATTATAATTAgaattttgttctttatttttgagagtttttttccttttttttggaaTACTTTTGCCTTCTCAAAACTCCAAGCCTGCTACTTATTCAGCTAAGCTTTACTCTATTAAACAAAGCTGGGATTGGAGAGAATAATGAGCACTGACAGATCTGAGATCAGTTATGCTGCTTTTCTTAgcatatttaaaagcaaaggtCGAAAGGTCAACCTGGTCCTGGGTCACTTCTTAATGGGGCAACACAAGTCCCTTTAGTGGTAATTCAAGTTCACTTGTGTATTCTCTCTACAGCACCGGTCGGTTCTAATGTCtctttgtatttataatgaTCGATGATTTATGTAAGTATTGTACCTGAGTTGGCAATTTGGAAAGGCATTGAAATGACTGAACTTTTTTAATCCACATAATTATTAGCAAGACTGAACTATCATTAGTTAACCTGAactaatgtatatatacatttagtgCACTCCCTCATATGGTAATTTTTGCCTGAATATGTTAAATTTACTGTCATGCAACaagaaaaattgaaaaaaaaaaaaaaaacaacaacaacaagaaacaaacaaacaaacatacaaaaacatgcCCTGTACTGAATGTATCTTGCTTGCCTTTAAAATGTGTGGAGAAAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04884 KCNAB3; potassium voltage-gated channel Shaker-related subfamily A, beta member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210502 lncRNA downstream 136963 27040225 ~ 27093696 (-) False G142464
TU210500 lncRNA downstream 136963 27089212 ~ 27093696 (-) True G142464
TU210468 lncRNA downstream 316378 26913969 ~ 26914281 (-) True G142440
TU210467 lncRNA downstream 316801 26912869 ~ 26913858 (-) True G142439
TU210466 lncRNA downstream 321278 26909126 ~ 26909381 (-) True G142438
TU210570 lncRNA upstream 17889 27275371 ~ 27276189 (-) True G142520
TU210571 lncRNA upstream 21438 27278920 ~ 27281441 (-) True G142521
TU210583 lncRNA upstream 75815 27333297 ~ 27333716 (-) True G142529
TU210596 lncRNA upstream 117727 27375209 ~ 27377527 (-) True G142540
TU210652 lncRNA upstream 188994 27446476 ~ 27451221 (-) True G142586
XM_043220045.1 mRNA downstream 82614 27146476 ~ 27148045 (-) True LOC122325133
XM_043220055.1 mRNA downstream 281764 26947330 ~ 26948895 (-) True her7
XM_043219305.1 mRNA downstream 290375 26926233 ~ 26940284 (-) True ganaba
XM_043220347.1 mRNA downstream 656646 26569767 ~ 26574013 (-) True LOC122325332
XM_043218675.1 mRNA downstream 670272 26558946 ~ 26560387 (-) False rps29
XM_043220003.1 mRNA upstream 79013 27336495 ~ 27339099 (-) False mtif3
XM_043220005.1 mRNA upstream 79013 27336495 ~ 27339087 (-) True mtif3
XM_043220004.1 mRNA upstream 79013 27336495 ~ 27339082 (-) False mtif3
XM_043219716.1 mRNA upstream 129808 27387290 ~ 27404395 (-) True zgc:152816
XM_043219717.1 mRNA upstream 129808 27387290 ~ 27401985 (-) False zgc:152816
TU210476 other downstream 305672 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 615929 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 996414 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 1042740 26185660 ~ 26187919 (-) True G142281
XR_006247173.1 other downstream 1133688 26088415 ~ 26096971 (-) True pgfa

Expression Profile