RNA id: unassigned_transcript_2516



Basic Information


Item Value
RNA id unassigned_transcript_2516
length 88
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-gcu_32
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26614643 ~ 26614730 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGAcggtggccgagtggttaaggcgatggactgctaatccattgtgctctgcacgcgtgggttcaGATCCCATCCTCGTCGGTCGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU210357 lncRNA downstream 54281 26483321 ~ 26560362 (-) False rps29
TU210352 lncRNA downstream 54281 26557458 ~ 26560362 (-) False rps29
TU210353 lncRNA downstream 54281 26557458 ~ 26560362 (-) False rps29
TU210355 lncRNA downstream 54281 26557458 ~ 26560362 (-) False rps29
TU210356 lncRNA downstream 54281 26557458 ~ 26560362 (-) False rps29
TU210399 lncRNA upstream 59699 26674429 ~ 26674883 (-) True G142381
TU210402 lncRNA upstream 101462 26716192 ~ 26716709 (-) True G142384
TU210428 lncRNA upstream 135853 26750583 ~ 26757783 (-) False LOC122325367
XR_006247290.1 lncRNA upstream 142323 26757053 ~ 26758203 (-) True LOC122325367
XR_006247289.1 lncRNA upstream 142323 26757053 ~ 26757924 (-) False LOC122325367
XM_043220347.1 mRNA downstream 40630 26569767 ~ 26574013 (-) True LOC122325332
XM_043218675.1 mRNA downstream 54256 26558946 ~ 26560387 (-) False rps29
XM_043220471.1 mRNA downstream 174720 26325231 ~ 26439923 (-) False LOC122325425
XM_043220473.1 mRNA downstream 174721 26325231 ~ 26439922 (-) False LOC122325425
XM_043220470.1 mRNA downstream 174721 26325231 ~ 26439922 (-) True LOC122325425
XM_043219305.1 mRNA upstream 311503 26926233 ~ 26940284 (-) True ganaba
XM_043220055.1 mRNA upstream 332600 26947330 ~ 26948895 (-) True her7
XM_043220045.1 mRNA upstream 531746 27146476 ~ 27148045 (-) True LOC122325133
XM_043220349.1 mRNA upstream 615929 27230659 ~ 27257482 (-) True LOC122325335
XM_043220003.1 mRNA upstream 721765 27336495 ~ 27339099 (-) False mtif3
TU210168 other downstream 380398 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 426724 26185660 ~ 26187919 (-) True G142281
XR_006247174.1 other downstream 517672 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 517672 26088415 ~ 26096971 (-) True pgfa
XR_006247182.1 other downstream 560465 26052206 ~ 26054178 (-) False LOC122324466
TU210476 other upstream 308085 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 615073 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile