RNA id: XM_043219305.1


Basic Information

Item Value
RNA id XM_043219305.1
length 4071
RNA type mRNA
GC content 0.45
exon number 25
gene id ganaba
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26926233 ~ 26940284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cGAGAACATACgcgcatatttattttattttagtttccttGAAAAGGTCCACGTGTACGACACGTTTGAGCTGACTGGACGCGCGTGGAGGGCAAAGTTCACACGGAGGCAAGATGGCGGCTTCCTGTGACAGtttgtTGCCGCTGCTTCTGTTGTTGTGTCTGAGCGCTCAGGCTGTGGACCGCAGCAACTTTAAAACATGCGACCAGAGCGCTTTCTGCAAGCGTCAGAGGGAGCTGAAGCCGGGCCAGTCTCCGTACAGAGCTCTGCTGGACACGCTGGAGCTGAGCGACTCCAGACTCACCCTGCAGCTCATCAATGACAACAACAAGGTTCGCTTGTTGCTGGAGCTGTACAGACTGCAGGGCAACATGACACGGGTGAAGATTAATGAACTCAAACCACTTAAGCCTCGTTACGAGGTTCCAGATGTACTCATCTCTGATCCCATTACCGAAACGCTCTCCGTGGTGGCTCAGGATGAGAATAGTCTGGTTTTGTCTCTGGGCGGCAAAGATCAGCGTCTCATCGTAAGTGCTCAGCCATTTCGGCTGGACATTGTTGAGGGTCCTCAAGTGCTCATGTCACTCAACTCCCGTGGCCTGTTAGCCTTCGAGCACCTACGGGCACGCAAGGACACTATCTCTCATAAAATAAGTAGCACAGTTGGTAGCATGTGGGACTCGCTCAAGAGCATTTTCTCTAGCAAAAGTGAGTCAGAGCAAGCGACCGAACAGGAGAATGTGGAGCAGCAAACCAATGaggaTGGACagataaaagaagaagaaagtaaACCAGGCATGTGGgatgaaacatttaaatctcATACTGATTCAAAGCCCAATGGTCCATCATCTATTAGTTTAGATTTTTCTCTACCTGGTGTGGAACACGTCTATGGCATTCCGGAACACGCAGATACATTTAAACTCAAAAACACAGATGATTCAGACCCATATCGGCTGTACAACTTGGATGTTTTTCAGTATGAGCTACACAACCCAATGGCCCTTTATGGGGCAGTTCCTGTCCTGATATCTCATAGCACTGACCGCACCATGGGCATCTTCTGGCTCAATGCAGCAGAGACATGGGTGGACATCAGCTCGAATACAGCAGGAAAGACAATGTTTGGAAAAATACTGGACTTTGTACAAGTTTCTAGTGAAGCTCCTCAGACAGATGTACGCTGGATATCTGAGAGTGGTATTATTGATGTCTTCATAATGCTGGGACCAAAACCTGCGGATGTCTTCACTCAGTATGCCTCGCTTACagGTACTCAgtcttttcctcctctctctgcgCTGGCATATCATCAGTGCCGCTGGAACTATAATGACCAAGAAGATGTAAAGACTGTCGATCAGGGCTTTGATGAGCATGACATCCCGTATGACTTCATTTGGCTGGACATTGAACACGCAGATGGTAAGCGCTACTTCACCTGGGATCCCAGCAAGTTCCCCCAACCTAAAGAAATGCTGCAAGGTCTGATGGACAAAAGACGCAAATTAGTGGCCATTGTAGATCCTCACATCAGGGTGGACAGTGGCTACAGGATTCACAATGAGATTCGCTCCAAAAACCTGTATGTCAAAAACAAAGATGGAGGAGACTACGAAGGCTGGTGCTGGCCAGGTAATTCAGGCTATCCAGACTTCACTAACCCTGAGATGAGAGCCTGGTGGGCCAGCCAGTTTGCCTATGACCAGTACGAGGGTTCCATGGAGAATCAGTACATCTGGAACGACATGAACGAGCCGTCTGTGTTTAATGGGCCTGAGGTCACCATGCACAAAGATGCACTTCATGGTGTCTGGGAGCACAGAGACGTTCACAACCTTTATGGCCTTTATGTGCAAAAAGCGACCGCCGATGGCCTGATTCAGCGTTCAGGAGGAGTGGAGAGACCTTTCGTTCTGACTCGAGCATTTTTTGCTGGATCCCAGCGTTACGGTGCAGTGTGGACCGGAGATAACGCTGCCGAATGGGGCCATCTGAAGATCTCCATCCCCATGTGCTTGAGTCTGGGTTTAGTGGGCATCTCATTTTGTGGAGctGATGTTGGTGGTTTCTTTAAACATCCCAGCGCTGAGCTTTTGGTGCGATGGTACCAGGCGGGAGCTTACCAGCCGTTTTTTCGTGCACATGCTCACATAGACACACCTCGCAGGGAGCCCTGGCTGTTTGGACCCGAGAACACCGCTATCATCCGGGAGGCCATACGCCAGCGATATGCTCTCCTGCCGTACTGGTACCAGCTTTTCTACAACGCACACCGCACCGGACAGCCTGTTATGAGACCTTTATGGATAGAATATCCTGAAGATGGCGCTACTTTTTCAATTGAGGATGAGTACTTGATTGGAAAGGATTTGCTGGTGCATCCCGTCACTGATGAGGGCGCTACTGGTGTTACTGCCTATCTGCCTGGGAAAGGCGAGGTCTGGTATGATGTTCACACTTTCCAGAAGCATGATGGAGATCAGAGCCTCTACATTCCTGTCACCATGAGCTCTATCCCAGTTTTCCAGCGAGGAGGGTCCATTATCTGCAGAAAAGACCGTGTTAGGAGATCTTCGTCCTGTATGGAAAACGACCCGTACACTCTTTATGTTGCTCTCAATTCTCAGGGCTCTGCTGAAGGAGAGCTGTACATCGATGACTTCCACACATTCAGCTATAAAGAAGCAAAGCAGTTTGTCCACAGACATCTGTCCTTCTCTGCCGACACGCTGTCTTCCAGGAATCTGGCCCTAGACTCCCAGTTTTCCACTGCCTCTTGGATAGAAAAGATTGTGATCTTCGGAGGCAGTCGACCGTCCTCTGCCACACTGAAAAATGCAGatGGTACAGAGTCAGCTTTAGAGTTTGAGTTTGACTCTTCACTCGCAGTTTTGACTCTACGTAAGCCAGGGGTCAGTGCGGCGGCAGACTGGACCGTAGTCTTGCGGTAACACCGGGACGACGTGCAAACAACGGAGAAAAGATAAGCACTTGACCAGACACGATTACAAAATGAGAGACCAAACAAGGAACGGGAACATGCATAGAGGAACCGAGGAATCAGATGTTTTTAAGACCATATATgtgttagggttaggtaaaTTTTGAGAAGCCATCAGTGAAGTACAGGACCAGTGTATTAAGAGAGGGGTTTGATGACATTCAGCTCTGTTTTTCACAGAGCAGGCTGAAACTTCTCTTTTAGACATGCTTTTGACAttcaaattaacaaaattaaaaactggttgaaagtaaaaaaaaaaaaatgtagatgatgttgatttataattttttctttttctgtctcagGTCGTTAAGtgttttggcattaaaaataaattttaaccttcaaaaattaaaaatcatgtgCACCGagatatgctttttttttttaatgggcaATTAAGAAACTGGAAATTATGaatagtcaaaaatatttaatattttacattaaatctcATGAAACCAGTTATTTCACTCCAGAATCTAAAGAAATAACTACAATTtcattatacatattaataaatctaCTTTAGGACCATTGTTTTAGTGGCTTAGCTCTTTTAAAACCAAATTCTCATTTGAGTAAGACATTTTCTGAATCTCTATTAAATAGACTATAAGGGACCGttttcaaaaactaaatgaccaatggaaaataaatttagttggtaatattttaaaatgaattaatagatgttattatttataccTTTGTTTACTAGAGCACTGACGCCATCAGTTATTAGTAGTAaggttttgttaaaataaagagaataaGAGTGTAGAAACGGGGCTTGGTAAAGGTCTTTGAGGCTGTTGTTTGAAAGAGACCGATGagtttgagcagcaaaaaaaaaaaagagcaacctTGAAACTCTGATTAAATTACCCAAGTTTTTTCAACGCTGAGCAGTCATGAGGATTGATTTTGAAGGATTTCAACGGaataaaatggatttaaatataaaaaacagtaAGAAAAGCACACGAAAACGTAAAGTGTCATTGCAGTAAATGTCTCTGGCGTAGGAATGGTAGAAATAAAAGTGGCTCATCTGA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K05546 GANAB; mannosyl-oligosaccharide alpha-1,3-glucosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210468 lncRNA downstream 11952 26913969 ~ 26914281 (-) True G142440
TU210467 lncRNA downstream 12375 26912869 ~ 26913858 (-) True G142439
TU210466 lncRNA downstream 16852 26909126 ~ 26909381 (-) True G142438
XR_006247290.1 lncRNA downstream 168030 26757053 ~ 26758203 (-) True LOC122325367
XR_006247289.1 lncRNA downstream 168309 26757053 ~ 26757924 (-) False LOC122325367
TU210502 lncRNA upstream 99941 27040225 ~ 27093696 (-) False G142464
TU210500 lncRNA upstream 148928 27089212 ~ 27093696 (-) True G142464
TU210565 lncRNA upstream 275348 27215632 ~ 27298876 (-) True G142515
TU210570 lncRNA upstream 335087 27275371 ~ 27276189 (-) True G142520
TU210571 lncRNA upstream 338636 27278920 ~ 27281441 (-) True G142521
XM_043220347.1 mRNA downstream 352220 26569767 ~ 26574013 (-) True LOC122325332
XM_043218675.1 mRNA downstream 365846 26558946 ~ 26560387 (-) False rps29
XM_043220471.1 mRNA downstream 486310 26325231 ~ 26439923 (-) False LOC122325425
XM_043220055.1 mRNA upstream 7046 26947330 ~ 26948895 (-) True her7
XM_043220045.1 mRNA upstream 206192 27146476 ~ 27148045 (-) True LOC122325133
XM_043220349.1 mRNA upstream 290375 27230659 ~ 27257482 (-) True LOC122325335
XM_043220003.1 mRNA upstream 396211 27336495 ~ 27339099 (-) False mtif3
XM_043220005.1 mRNA upstream 396211 27336495 ~ 27339087 (-) True mtif3
TU210476 other downstream 1246 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 311503 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 691988 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 738314 26185660 ~ 26187919 (-) True G142281
XR_006247174.1 other downstream 829262 26088415 ~ 26096971 (-) False pgfa
TU210568 other upstream 289519 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile