RNA id: TU210568


Basic Information

Item Value
RNA id TU210568
length 5923
RNA type TUCP
GC content 0.41
exon number 13
gene id LOC122325335
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27229803 ~ 27257482 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGAACGGCAACTACGCCCCTCAGAGCTCGGTCAAAACACGGGACGCGGCGGGGTCCCGACCCCTGCCCCAAGGCCACGCCCACATGAAGGAGGCTATTGGACGTCACAGTAGCATGAAATACAGAAACCTTGGAAAGTCGGGGCTACGTGTTTCCTGCTTGGGTCTTGGTACCTGGGTGACATTTGGATCTCAGATCTCCGATGAGATGGCGGAGAGTCTGATGACTATAGCCTATGAGAATGGAGTGAATCTGTTCGACACGGCAGAAGTGTACGCTTCAGGCAGGGCTGAAATCACTCTAGGGAACATCATCAAAAAGAAAGGCTGGAGacggTCCAGTTATGTAGTAACGACTAAGATCTACTGGGGAGGACAggcagagacagagagaggcctGTCCAGAAAACACATCATCGAAGGTCTCAGAGGTTCCCTGTCTAGACTACAGCTGGATTACGTGGATATTGTCTTTGCCAACCGAAGCGATGTGAACAGCCCTATGGAAGgAGGCATACTCTGTAGCGAGGCAGTTTAATTTAATCCCACCGGTATGCGAGCAGGCCGAGTATCACTATTTCCAGAGGGATAAGGTCGAGGTGCAGCTGCCAGAGCTCTACCACAAGATCGGTGTTGGAGCGATGACCTGGTCTCCTCTCGCATGCGGACTGATCACTGGAAAATACAGTGACGGTGTTCCAGACTGTTCAAGAGCCGCCATGAAAGGCTATCAGTGGCTAAAGGAGCGAGTGTACAGTGAAGAAGGGCGCAGACAGCTGGCAAAAATAAAAGAGCTCCACCTGGTGGCTGACCGGCTGGGCTGCACGGCTGCTCAGCTCGCCATTGCGTGGTGTTTGCGTAGTGAAGGGGTCAGTTCTGTACTTCTTGGTGTCTCCAATACAGACCAGCTTCTTGAGAACCTTGGAGCCCTGcggGTGCTGTCTCAGATGACGCCTCAGACTGTGAGCGAGATAGATGCTCTCCTGGGCAACAAACCGCACTCCAAGAAAGAGTCACGTGCGTGAGGGAACCAGAGAGATGACATGAACATGTGCAgccagaaaagaaaaagaaagcaagggGGAAAAGATGGAACACGGCGTACCATCGCTTTTCTGCTCTCCCGTATATTACAACACCTGCATGCCTTCTGCAACATGCTTCCAGCCCATACCGCACTGCTCTCTGTAACCCTACTCAAGTATCCGAACATATCCTACCAATTAAACAAGGAAACGGCTGTGCGCAACGTCACAGAAACGCAACGAACAACGGCTGTTTTCGTTTCTTTACTCTAAGAGGCTGAAGTGACAGCCTTCCACGAGGAGGCACTGTCGGTTGTCGGAGGAGAATGGAATGAAAGTGGCAAAAGACTTGTTTATTAGCTGACCCAGACCGAATCTGCAGACTGTTTCCACTGCTGAATTTTCGTTGCCAAATTCCGCGAAGAGTCGAGCTGAGAGTGGTATATTCTTATTGGCAGCTGAAGTCAAATTtgccaaaatatttattaaacaaacatgcaCGGGGAAGGGGGAAAGATGATTAGCTGGACTTTGCAAATCGTTGGCGTTCTGCGGAAATCCGCACGGGCCTGGTCGAGTACGTGTGCATGCAGTGACGCTTTGAATCAAACTCTCCGTCGCTGGTGTTGCACCTGAGTGACTCGGAAAATGGATGCTGTGTGACGCCAAGCGAAGATGTTTCTGAGAGCTGCCCGTCCCGTTGGTTTGGGGTGTTCACTGCCTGTCACATTTCATTCTCGCTGCGCAGGAGAGCGTGGCAAACACTCCGGCGTGTGACAGGAACAACATGCAGCAACTGCAAACAGCTGTTTGGACACATCACAAGTCTTCCTCCATTTCCCTCCTTTCCATCTCTCCTTGTGTTTACAACGGTGCacctgtccctttaagagaaTTTGTGCAGTCAGGGGAGTGGTGTGTGAGCGTGTATGTGGTACCTTGGAAAAATATTCAGACTCTCGctgatttacttttttaaaaacaactggtTATAATTGCTATTCCTAACAAACAACCTAAACTAATAACCATAAACCATAACCAATCCTGCCCTGTCAGAAAAAAAGGATACCTATAGGGGAGGCAGAACCCTTAAAGAgacacttttgtacctttgtTACCCCTAAGGGATTAAAAATAGTACCCTAAGAATACACATTACtgtcttaaagggttactccatcccaaaataaaaattttgacaTTCATTCAGATGACTGGGGGTAAgtgacaaaattttaattttggggtgaaaagagttatattaaaaaaatataagcttAAAGGGTTCCCGATATTCACCCTGTGGAGGTTAAGAAGGTacaaaaatgttgctttgagGGTTCTGCCCCAGAGACAAGCTGTTGCTCCCCTAAAGGTACAAATtgtgcactttatttatttagatcgCTCTCTGTTTGTGCAGGAAGCAGGAAAGATACCTCAAATCGTGCAGCTTGTTTAAAAGggattttaattacaaaaacaggGAAGAGTATCTCTAGGCTTGCGAATTGAGCCACATTTAGGGACCAGAATATCATTGTCAAAGTCCATAACCATGTCCTGAACCTAGTATTAATAGCTTCgaaagatttctgaatgataatagtctttttatataacaattgAAATGAATGGGGAATATGGAAGTATGAAGAACAGTAAAAGAACAAGAATATTTCAAACACGCTTACAATGTTGAAAATGCAAAGCTGAGAAATATTTCTGATCTCATCATAACTGATTATGCATTACACGAATCAGAGAGATTTTCGAAgcataaatgaaacatttagttTGCATCACTGGATATTACTGTTGATTACTGTTGATTGTCAGATATGATATGTtaagataaataaacagatacaaaaaattaaacatgcacatgcaaattttaacattaagatctataaaatgcatttagaaaaaaaacaaaaaacaaaaacaaggacGCTGTTTTTTGTAGAGCCATCTTTGCAGCAATGATAGCTTTCAGATTTCTTCGGAGTATGAATGCATGAACGCACTGTCCAGATgtcattttagctttttttccagGCAGATTTGCTCCAGGTTGTTTGAGATTAGTCAGATGTTCTTTCTGCATTACAATGTTCCAATAGTGCCACAGATTGTGACGTCAGTTTTATAACTGTGCCATTTCAGGACATTCAGCTCTCTGTTCTTCAGCTAATGTCCTGCTCGACGAGCTTTCTCTGAAGCTTCGGCAGTTTTATAAAATTTCTACGAATATATTCTTATTCTTTAAGTTTTATATCCTGTATTGAATTAGAGTATTTAGGAATAATTGAAAGAACTTCTGCACTAGTATCAGCACCAAATGGAAGCGCAATCTGTTTGAGAAGTCTGCCCGGGCCAGATATAGCAACGGACCGTTTGCTTGAATAATGGCAGGCAAAAAAagaatcaaaccaaaaaaaaatcattcttttttcaaaatcagTTTTGCGTGAGATCCTTCACCTTCGTGTGCAGGTTTTGCATTAGTTATCATTTGTGAATCGGGTCGTGGTCTGAATACTTTTGCTAGGCATCATATGCGTGGGGCTTGGCTTCAGCGGTCAGCATCCTTTGCACTAAGTGGACAGAGTCATAATTTAAAGATCGTAGTTCACAAATAGTCATGAAGGTCATAGGTTAACATGACCAGAGAACTGTGCTAGTATTGCTTTGTGTGTTTGACAAATACAAGCTGCGTCAGTGACAATGAAAAGCGAAGCgcttcacttttaaaaatgtgttcgtGTCATTCCATGATTTCAGATCGAAGGACACAGATTGGCTAGATTGAGTGACTACTGTCAATTTCCCATCAGCCATTGCTGAACATCACGGTGTGCGGTGCCTCAGAACGTGGTTCATAACTCCACTTGTTCCATAACCCAGTTACCACAGAAAATCATTAggagaaaaatacaaatgttgtttacagtaatgcatttacaatgaaCGTCTAAGGGGCAAGTGCACCGTGCGGTTTAAAGCTGAAATGCGAAGCTATATACTTTGCACACTGGCTTTGTGTCTAGTCTTGTGGTTACACTTTTCAAATTGCATTTTAGCGTTTATAACAGTGCAGCGCCTTGCCCCATGGATTTCCATTAATGCACGTGTGTTACTGTAAATGGTTTTTGTTTATACAAACTAACGCTTAAGATATTTTCTGCAGTAAATGACACGGTGAGCTATTCTTTTAACTCTACCGAACCCaggcaaaaaaaactaacagaTTTAGTTCAGCACAATAAACAGGCACAAACAGAATTAAACCCTTTATATTAAACCAAATTCTTTTTTAACAATAAGTGTAATATTAGTTGCGTCGGAGAAACCCAGACTTGGCAACGCTAGCACGATTCACTGTTTGTATTATAATTAgaattttgttctttatttttgagagtttttttccttttttttggaaTACTTTTGCCTTCTCAAAACTCCAAGCCTGCTACTTATTCAGCTAAGCTTTACTCTATTAAACAAAGCTGGGATTGGAGAGAATAATGAGCACTGACAGATCTGAGATCAGTTATGCTGCTTTTCTTAgcatatttaaaagcaaaggtCGAAAGGTCAACCTGGTCCTGGGTCACTTCTTAATGGGGCAACACAAGTCCCTTTAGTGGTAATTCAAGTTCACTTGTGTATTCTCTCTACAGCACCGGTCGGTTCTAATGTCtctttgtatttataatgaTCGATGATTTATGTAAGTATTGTACCTGAGTTGGCAATTTGGAAAGGCATTGAAATGACTGAACTTTTTTAATCCACATAATTATTAGCAAGACTGAACTATCATTAGTTAACCTGAactaatgtatatatacatttagtgCACTCCCTCATATGGTAATTTTTGCCTGAATATGTTAAATTTACTGTCATGCAACaagaaaaattgaaaaaaaaaaaaaaaacaacaacaacaagaaacaaacaaacaaacatacaaaaacatgcCCTGTACTGAATGTATCTTGCTTGCCTTTAAAATGTGTGGAGAAAACTAGTGTCACAGGTGTCATTTATGTCAACTACTGCAGAGCATGACAGTCACTTGCATGTTACACGCAAAAAAACCCATGAGCACATACACACTCGTCTGTGAATGTCATCCGAAAGAAAAAATCGCAACACgcataataaaagcacattGTCACAGATTCACACGTAAAAAggtcatttaaacaaattcaaCTTGACATTCAGGTTATTCTCTGTCTAAGTGAATCCTACAAAAACACTACATTTCATCCCATAATCAAAGGtacaaaattgcataaaattaacttttaaaaagttttaattttaaaaatgcaacttttagGACCAAGACGCAAGTCATGGCAATTGTAACGAAGTATAAAATCAGATTTGACCGAGACATATCGAAATGATTTTTTCTGGAGATTCGCCTAAAAAGAGAATTTAAAGTCGGTGTAACACTGTACACATAAGCACATACCGTACGCAGTGTCCATCACACTCAAGTGTTTGTTCTGGCTGTGTAGTCAGACTGTATGAAGcagctgtgagtttaacacaCCGATGATTTCATCCGACGAATCAAACGTTACACAACTGCAAACCTCTTGCACATTAGACAGTAGTGTTGAGTTGAACAGTATTCAGATATATTATTGCTCATAAGTGTACATAGCCCATGCAGAAACTTCCTTatgtttataattgttttacGATGAATTAAAAACCCTGCGTGTTTTTATTCAGCACCAATTCAGTTAATCAGTATCCTGATTAATCTATTTAACAGATACATAATATATTCATCTATTTAtgaaatacatatatgcatacaacATGAGACAGCACATtatattaaaggaacagttaacctaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210502 lncRNA downstream 136107 27040225 ~ 27093696 (-) False G142464
TU210500 lncRNA downstream 136107 27089212 ~ 27093696 (-) True G142464
TU210468 lncRNA downstream 315522 26913969 ~ 26914281 (-) True G142440
TU210467 lncRNA downstream 315945 26912869 ~ 26913858 (-) True G142439
TU210466 lncRNA downstream 320422 26909126 ~ 26909381 (-) True G142438
TU210570 lncRNA upstream 19113 27275371 ~ 27276189 (-) True G142520
TU210571 lncRNA upstream 22662 27278920 ~ 27281441 (-) True G142521
TU210583 lncRNA upstream 77039 27333297 ~ 27333716 (-) True G142529
TU210596 lncRNA upstream 118951 27375209 ~ 27377527 (-) True G142540
TU210652 lncRNA upstream 190218 27446476 ~ 27451221 (-) True G142586
XM_043220045.1 mRNA downstream 81758 27146476 ~ 27148045 (-) True LOC122325133
XM_043220055.1 mRNA downstream 280908 26947330 ~ 26948895 (-) True her7
XM_043219305.1 mRNA downstream 289519 26926233 ~ 26940284 (-) True ganaba
XM_043220347.1 mRNA downstream 655790 26569767 ~ 26574013 (-) True LOC122325332
XM_043218675.1 mRNA downstream 669416 26558946 ~ 26560387 (-) False rps29
XM_043220003.1 mRNA upstream 80237 27336495 ~ 27339099 (-) False mtif3
XM_043220005.1 mRNA upstream 80237 27336495 ~ 27339087 (-) True mtif3
XM_043220004.1 mRNA upstream 80237 27336495 ~ 27339082 (-) False mtif3
XM_043219716.1 mRNA upstream 131032 27387290 ~ 27404395 (-) True zgc:152816
XM_043219717.1 mRNA upstream 131032 27387290 ~ 27401985 (-) False zgc:152816
TU210476 other downstream 304816 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 615073 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 995558 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 1041884 26185660 ~ 26187919 (-) True G142281
XR_006247174.1 other downstream 1132832 26088415 ~ 26096971 (-) False pgfa

Expression Profile