RNA id: XM_043220473.1


Basic Information

Item Value
RNA id XM_043220473.1
length 5100
RNA type mRNA
GC content 0.55
exon number 17
gene id LOC122325425
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26325231 ~ 26439923 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctctctctctctctccgcgtTATTGCGCAACGCGGTGACACGAGCGCACCGGACTCGGTTCACTTGAGCTCGGTTCCGACGGAAGCCCGGCAGAGAGTTCCGAATCAGATGCTGCTCGGAGCGATGACGGACAGCCAGGTGCACGCGCATCGCTCGTCCCCGTCTCCGCTGGTCCTGATGCTGCGTGCGCGCGAGCATCACCCCcgtcagcagcagcagcagcagcagcagcagcatcactAAGAGACGCTCAGAAGCTCGGATCGGATGAAGCGATGCCATCCGCTGCCAGACCGTCCCCGAACCTCCTCCGAGCCGGCGAATGAACACTCATCCTCGGCGAAGCGCCTCACCGTCACGAGCCCTCGCGAGGACGCGGATCCGAGGCTTTGACTCGAGAGATCTGCGGCTTTTCTTCCACCTTCTGGAGACACTCCGGCGCTTTAATCTGGATATGTTGAAAGGAACATAAGGATGGATGGGATTATTAGTGTTTTGGGGGTCCTGACGCTCGTTTTGGAGGGCATCTCGTGCCAGGGAGTGTATGCGCCTCCGACGGTCCGGATCGTTCACTCGGGTCACGCGTGTAACGTGGAGGAGGAGCGTTATTCTGAGAGGGTTTACACCATCCGCGAGGGAGAGACGCTCGAGCTCACCTGCCTGGTCACCGGACATCCACGACCACAGATTCGATGGACCAAGACAGCAGGCAGCGTGTCGGACCGATTCCAGGACTCCAGCGTCTTCAACGAAACCCTTCACATCGCGAAGATCCAGAGACATCAGGGTGGACGCTACTACTGCAAGGCCGAGAACGGACTGGGTTCCCCGGCCATCAAGTCCATCAGGGTGGACGTCTACTATCTGGACGAGCCGGTGGTGACGGTTCATCAGAGCATCGGTGAAGCGAAAGAACAGTTCTACTACGAGCGGACCGTATTTCTACGCTGCGTGGCTAACTCTAACCCGCCCATCCGCTACAGCTGGTACCGCGGCAGAGACGTTCTTTCCCAAGGCTCCGATAAAGGGGTGGAGATCTACGAGCCCTTCTTCACCCAGGGGGAGACCAAGATCTTGAAGCTGAAGAACCTGAGACCCAAGGACTACGCCAACTACAGCTGCATCGCCTCCATCAGGAACGTCTGCGGCATCACCGACCGCAAAGTCGTCTTCAGACTCACCAACAAAACCGCTCCAGCCTCCATCAAGCTGCTGGTGGAGGACCCGATCGTGGTGAACCCAGGTCAGACGGTGTCTCTGGTCTGCATCACGACCGGAGGAGAGCCGGCTCCGAGCCTGGTCTGGACCAGCAGCTCCGGATCTCTGCCGGAGAAGAGCCTGATGAAGGAAGGGGTTCTGACCATCCCCGCCATCGCCTCTGAGGACGCCGGCGTCTACAGCTGCATCGCCAGCAACAACGTGGGAAACCCGGCTAAGAAGTCCACCACCATCATCGTACGAGCGCTGAAGAAGGGCCGCTTCTGGATCACTCCGGACCCGTACCACAACGACGATAACATCCAGATCGGCCGTGAGGTGAAGATCTCGTGTCAGGTGGAGGCCACTCCTCCCGAGGAGCTGCAGTTCAGCTGGCTGAAGAACGGCCGGGCGTTACGCAGCTCCGAGCGCATGGTCATCActcagactgaccccgacatcTCGCCCGCAACCACCAACCTCGACATCATCGACCTCAAGTTCACCGACTTCGGGACCTACACCTGTGTAGCAGCGCTGAGAGGAGGAGCTATCCCAGAGATCAGCATCGACGTCAACATCTCCTCCACCACAGTTCCTCCGAACCTGACCGTGCCGCGGGGCAAGTCTCCTCTGGCGGCGCGGGAGGGCGAGACGGTGGAGCTGGAGTGCCTTGTTTCAGGGAAACCCAAGCCCATCATCCTGTGGTCCCGGGCGGATAAAGAGGCGCCGATGCCGGACGGAAGCATGCAGACGGAGAGCTACGACGGCGTCCTGCGCATCGTCAACGTGTCGCGAGAGATGAGCGGGTCGTACCGGTGCCAGACCAGCCAGTTCAACGGATTCAACGTCAAGCCCCGAGAGGCTGTGATCGAGCTCATCGTGCGCTATCCTCCGGCGGTGGAGCCGGTGTGGCAGGAGGTGCGGCAGGGTTTGGGTCGGCCGGTGTCCATGAACTGCCGTGTTCTGCGCGCTCATCCGTCGCGAGTGCTGCGCTACGAGTGGAGGCTGGGCTCGCGACTGCTGCACGCCGGCACCTTCGACTCGCGCGACGACACCGACTACAGCGTGCGCAACCTGGCGCGAGAGGGCTACGGCGAGTACACCTGCGACGTCATCAACGAGGTGGGCCCGGGCCGCTGCACCTTCCTGGTGACCGgtaaAGCGTATCCTCCAGAGTTTTATTACGACACCTATAACCCGCTGTGGCAGAACCGTCCTCGTGTGTATGGCTATAAGCTGCAGTGGACACAGATGAACCCGAGCGCCGTGGACCGGATCATGGCGTACCGCCTCGGCATCAGACAGACGGGGCAGCAGCGCTGGTGGGAGCAGGAGATCCCCGTGGAGGGGAACATTCAGAAAGGAGAGCTGATCACACACAACCTGACGGAGCTGATCCGGCCCGAGGCGTACGTGGTCCGACTGACGCCCATCACCCGCTTCGGGGAAGGAGACTCCACCACCAGAGTGGTCACGTACAGCGCTCCCATCAATCCTCATCTGAGAGAGTTTCACTGCAGCTTTGAGGAGGATCCGGTGTGTCTGTTCACTCAGGATAAGAACGATGACTTCGACTGGATGAGACACAGCGCAGCGACACGAGACACTAAATACACCCCGAACACGGGCCCCAGCGGGGACCGCAGCGGCTCCAAGCAGGGTTTCTACATGTACATCGAGACGTCCAGACCTCGTAAAGATGGAGACACAGCTCGTCTCCTGAGTCCTGTGTTTAACGTTGCTCCTAAAAACCCGCACAGCATCACGAGTCCCCCGACCTACTGCTTCAGCTTCTACTACCACATGTACGGCAAACACATCGGCTCTCTGAATGCGTTCGTGAAGCAGAAAGGTCAGTCGACTTCAGACGCCGGTCCAGTCTGGTCTCTCAGCGGGAACCAAGGGGACCGATGGAGACAGGCCAAAATTAGCATCCATCCTACTGCCTCCTTCCAGGTGATATTCGAGGGCATCCGGGGCCCCGGGATCGAAGGGGACATCGCCATCGATGACGTCACGCTCGAGGAGGGGGAGTGTCCCGACCCTCCGTCCAATCCGATCCGAGGAGCGGCGGCACCCGGCGTCTCCAGTATATGGCCATTGAGCGTCACGCTGTTTTTTACCGTAATCGTCGGCCGGAGGTGACGCTCCACGTGAGAAAAGACTCCGGACGCGTCCCTCAGTATTTAATCACCAAAGATTCACGCTTTCGGATCGCAGAGGAGGCACGGCACCGGATCCACGCGGAATAAAACCACTACGCGACGGATAACGAGGCTTTCGAACGTTGACCTCAAAAGCACAACGAATATGGAATCTTTAGCGACAAGCGAAACCATGAGTTTTACACACCGTTTTTCTTTttgtcgtcgtcgtcgtcgttcTTTTCTGGTGCTTCGGAGTACAATCAGCAGAACATCTCATCCCCCGGCCGATCGTCTCTCTTGATTCGTTCTGGGTTCGGTGCTTTAAACTCGAAGCTCGTTTGGCTTTGCTCCCCGACTCCAGCAGCAGCCTGGCTTCTCAACACTGTGCTCACGCTCTAAAGCGAAGAACCTCGCGTGTTTTCGGCGTTCCGTGGCGGCGGGAAACTCGGTTCGTCGCCGTTCCCAGCACCGGTGACGAGTGACTTTACAAACCAAGTGCCTTCAGGTTAGAAGCCGATCCGTCAGCCTGGCCATCGACACCAAACgtccatgtttctagcatctccGATGGGCTATTTTATACTCATTTCTATCGCCCCTCAAGTGCTGGAATGCGCGACTGTGAGCAACTTCTGCTGGAGGACGATGTCCGGACGAATGTCACGCTCTCCATCTCCGACTGTCACGCCATTTATATCCAGAACAATCTGCATTCTGAGAGGACAAAAACGctaaatattcataattctaataatattttattactctATCCAGAATGTGTCTCAGCTTTTACACACGGACCGTGGACGCCGTTGGCGGTATCTACCTGAGCGCTCGGCCGGCCGCTTTTTAAAAAGAGtgttgtaaaaaacaaaaaacaaatgtgttacGAAAATGACTGTGTCTCGTTTCTTCTGATTTACGTCGAAATGTTCCGACTTTACTGTCTTTATTTCTCGTCGTCTCCCTTTGCATtgctgaaaatatcaaaaacagGCGGGAAAAACGCCGGTTCGGTAACTGTACAACTTGTATATGTAAAGATACTCTGTTCATTGAGATTTATATGAGATGTTTTATGTACGAGTCGAAGGAAGCACAACATTTAGGATCCAGTCGTTTAGAAACGTATATGTGACCGTTCTCCTGCAAAGCCAGCGTGGAAATGAAGAGACGCCGGAAGCTGGCTTGAATTAATCTGCACGTGATGGGAATATTGGATAAAAGCAAAACGCCTTTTCGGTTATTGGGCCGGAATCTACATCTACGGCTGATTAGTGATATCCCAAAGTCAtttaaagaaagagttgacCCCAAAATAAAACCCTCGGGAAGTGCGTCATtgcagtggatgctctgcagtgaatgggtgccgtcagaatgagttcAGGGTTATGAGATGATAAAAATGTGTCTCAGcgatggaagtgaatgggtgccgtcagaatgagttcAGGGTTATGAGATGAGAAATGTGACTCTGTCTCAGcgatggaagtgaatgggtgccgtcagaatgagttcAGGGTTATGAGATGAGAAATGTGTCTCAGcgatggaagtgaatgggtgccgtcagaatgagttcAGGGTTATGAGATGAGAAATGTGACTCTGCATCAGcgatggaagtgaatgggtgccgtcagaatgagagttaataaaacatcacaataatccacagcgctccggtccatcggttaacgtctggagaagacaaaaaatgtaaatttctttagagctgtgcagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210345 lncRNA downstream 5090 26319870 ~ 26320141 (-) True G142347
TU210330 lncRNA downstream 13533 26311211 ~ 26311698 (-) True G142346
TU210195 lncRNA downstream 55187 26269637 ~ 26270044 (-) True G142299
TU210193 lncRNA downstream 57106 26267912 ~ 26268125 (-) True G142297
TU210172 lncRNA downstream 90986 26233585 ~ 26234245 (-) False G142278
TU210362 lncRNA upstream 32435 26472357 ~ 26472760 (-) True G142354
TU210363 lncRNA upstream 38629 26478551 ~ 26479196 (-) True G142355
TU210364 lncRNA upstream 39380 26479302 ~ 26479785 (-) True G142356
TU210357 lncRNA upstream 43399 26483321 ~ 26560362 (-) False rps29
TU210370 lncRNA upstream 107266 26547188 ~ 26555553 (-) True G142362
XM_043220345.1 mRNA downstream 17419 26307401 ~ 26307812 (-) True LOC122325330
XM_043220562.1 mRNA downstream 23356 26299497 ~ 26301875 (-) True LOC122325526
XM_043219619.1 mRNA downstream 33075 26289769 ~ 26292156 (-) True LOC122324886
XM_043219621.1 mRNA downstream 36984 26287837 ~ 26288247 (-) True LOC122324888
XM_043219620.1 mRNA downstream 37626 26285813 ~ 26287605 (-) True LOC122324887
XM_043218675.1 mRNA upstream 119024 26558946 ~ 26560387 (-) False rps29
XM_043220347.1 mRNA upstream 129845 26569767 ~ 26574013 (-) True LOC122325332
XM_043219305.1 mRNA upstream 486311 26926233 ~ 26940284 (-) True ganaba
XM_043220055.1 mRNA upstream 507408 26947330 ~ 26948895 (-) True her7
XM_043220045.1 mRNA upstream 706554 27146476 ~ 27148045 (-) True LOC122325133
TU210168 other downstream 90986 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 137312 26185660 ~ 26187919 (-) True G142281
XR_006247174.1 other downstream 228260 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 228260 26088415 ~ 26096971 (-) True pgfa
XR_006247181.1 other downstream 271053 26052206 ~ 26054178 (-) False LOC122324466
unassigned_transcript_2516 other upstream 174721 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 482893 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 789881 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile