RNA id: TU210362


Basic Information

Item Value
RNA id TU210362
length 404
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G142354
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26472357 ~ 26472760 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCCATCCCAGGTGTATGTGACTGTCTTCTCTTGTAAGTTTGGTAATGCTgctggatagtggccattattctgaagctccgtaaatctgATTCGTCCACAAGAACTGCGACGGAAAACGAACCTATACGCCTCCGGGGGGTTATACACGGGTTTctgttacaaaaataattctagCTTGaaaattacttattattaaaGACTTATTATTTCCCTCGAGAACGCCGAGTTCCGGCTCCGACTGACGCGACGTACGACGAAGAAGCCGGAGTCGGTTATTACGTTTATTATGTTATCGtttcaaaactagaaatattctTCAGACGTCATGAGATAACCCCCGAAGCCGTATCGGTTCGTTTTTAATCGCAGTACTTGCGTATATATCTGATCACGAGCTtacaa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210349 lncRNA downstream 91084 26364019 ~ 26381273 (-) False G142349
TU210350 lncRNA downstream 107682 26364019 ~ 26364675 (-) True G142349
TU210345 lncRNA downstream 152216 26319870 ~ 26320141 (-) True G142347
TU210330 lncRNA downstream 160659 26311211 ~ 26311698 (-) True G142346
TU210195 lncRNA downstream 202313 26269637 ~ 26270044 (-) True G142299
TU210363 lncRNA upstream 5791 26478551 ~ 26479196 (-) True G142355
TU210364 lncRNA upstream 6542 26479302 ~ 26479785 (-) True G142356
TU210357 lncRNA upstream 10561 26483321 ~ 26560362 (-) False rps29
TU210370 lncRNA upstream 74428 26547188 ~ 26555553 (-) True G142362
TU210352 lncRNA upstream 84698 26557458 ~ 26560362 (-) False rps29
XM_043220471.1 mRNA downstream 32434 26325231 ~ 26439923 (-) False LOC122325425
XM_043220473.1 mRNA downstream 32435 26325231 ~ 26439922 (-) False LOC122325425
XM_043220470.1 mRNA downstream 32435 26325231 ~ 26439922 (-) True LOC122325425
XM_043220472.1 mRNA downstream 32436 26325231 ~ 26439921 (-) False LOC122325425
XM_043220345.1 mRNA downstream 164545 26307401 ~ 26307812 (-) True LOC122325330
XM_043218675.1 mRNA upstream 86186 26558946 ~ 26560387 (-) False rps29
XM_043220347.1 mRNA upstream 97007 26569767 ~ 26574013 (-) True LOC122325332
XM_043219305.1 mRNA upstream 453473 26926233 ~ 26940284 (-) True ganaba
XM_043220055.1 mRNA upstream 474570 26947330 ~ 26948895 (-) True her7
XM_043220045.1 mRNA upstream 673716 27146476 ~ 27148045 (-) True LOC122325133
TU210168 other downstream 238112 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 284438 26185660 ~ 26187919 (-) True G142281
XR_006247174.1 other downstream 375386 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 375386 26088415 ~ 26096971 (-) True pgfa
XR_006247181.1 other downstream 418179 26052206 ~ 26054178 (-) False LOC122324466
unassigned_transcript_2516 other upstream 141883 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 450055 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 757043 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile