RNA id: TU210399


Basic Information

Item Value
RNA id TU210399
length 455
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G142381
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26674429 ~ 26674883 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaggcaaaaaacatCTCCAACATTCAGGGAGAATAAACAAGCTTAATTTAACATAGAAACAAAAGATTTGTCAAGAAACGTTCTAGAGCAGACTTACAACAGGACTGGCTAAGGAACATCAATATCCAAGCAAAGAACCCAAAGAAAGtcctctgtttaaatacataggCTAAAACAAGGCACATGTGAAAGCAGTTGCACTGATTAGAAACAAAATGCAGACATGAGGCTCTATAGGGACATCTAGTggccaaaataaagcatctcAAGCAAAAGCTCTGACAGGACCCCTCCCTCTAGGAACGACTCCTGGCGTTCCATCCAGGATGACTGGGCTTGCGAGCATGAAATTCTCGAATTAGATTTGGGTCCAAGATGTCTTTGGCAGGAACCCAGGAGCGCTCCTCAGGACCATAGCCTTCCCAGTCCACAAGATACTGCCGGGACCCACGT

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0005516 calmodulin binding molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210357 lncRNA downstream 114067 26483321 ~ 26560362 (-) False rps29
TU210352 lncRNA downstream 114067 26557458 ~ 26560362 (-) False rps29
TU210353 lncRNA downstream 114067 26557458 ~ 26560362 (-) False rps29
TU210355 lncRNA downstream 114067 26557458 ~ 26560362 (-) False rps29
TU210356 lncRNA downstream 114067 26557458 ~ 26560362 (-) False rps29
TU210402 lncRNA upstream 41309 26716192 ~ 26716709 (-) True G142384
TU210428 lncRNA upstream 75700 26750583 ~ 26757783 (-) False LOC122325367
XR_006247290.1 lncRNA upstream 82170 26757053 ~ 26758203 (-) True LOC122325367
XR_006247289.1 lncRNA upstream 82170 26757053 ~ 26757924 (-) False LOC122325367
TU210466 lncRNA upstream 234243 26909126 ~ 26909381 (-) True G142438
XM_043220347.1 mRNA downstream 100416 26569767 ~ 26574013 (-) True LOC122325332
XM_043218675.1 mRNA downstream 114042 26558946 ~ 26560387 (-) False rps29
XM_043220471.1 mRNA downstream 234506 26325231 ~ 26439923 (-) False LOC122325425
XM_043220473.1 mRNA downstream 234507 26325231 ~ 26439922 (-) False LOC122325425
XM_043220470.1 mRNA downstream 234507 26325231 ~ 26439922 (-) True LOC122325425
XM_043219305.1 mRNA upstream 251350 26926233 ~ 26940284 (-) True ganaba
XM_043220055.1 mRNA upstream 272447 26947330 ~ 26948895 (-) True her7
XM_043220045.1 mRNA upstream 471593 27146476 ~ 27148045 (-) True LOC122325133
XM_043220349.1 mRNA upstream 555776 27230659 ~ 27257482 (-) True LOC122325335
XM_043220003.1 mRNA upstream 661612 27336495 ~ 27339099 (-) False mtif3
unassigned_transcript_2516 other downstream 59699 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 440184 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 486510 26185660 ~ 26187919 (-) True G142281
XR_006247174.1 other downstream 577458 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 577458 26088415 ~ 26096971 (-) True pgfa
TU210476 other upstream 247932 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 554920 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile