CI01000001_12006266_12048809 (DVL1A, DVL1B, DVL1)


Basic Information

Item Value
gene id CI01000001_12006266_12048809
gene name DVL1A, DVL1B, DVL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12005928 ~ 12049045 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_12006266_12048809.mRNA
ATATATATAACAACTCAAATATCTGAAACTGCAGATCCTTTCTGCAGAACTACAGAACATTGTACTTTTCTGTAGTTTTATTACATACACTTTTCTGTCTTCTGAGCATGTTGTCTTTATAAGGGTTGCCAACTCCTTTTTCCTGCATTATATGGAGACTTTTATTTAGGCCTGCTGCTTTGCCATATTTATTAAAACTACAGTATATACTGTCTAATGTGTGCGGTAAAGTACTCCATTATAAATCCTAATGCTAAATGTACTGTATATTGTATATCGATTAGTATTAGATTGTTGATGTGGCTTTGGCATTGTCACATACAAAATAGACCCTGAAAATGTCCTTTTTACCTTTTCCAACAAATGAGAGAAACATTGACGCCGTAATAGAGACGCGCAGGCTTCGATTATGTCTGGAACCGCTCTCTCCGTCCAAGACAAGGATTTTTGTTTGCCTACGTGAAACCGGCAACCAGCAATGTCGCCTTATAGCGCATATAAGACACTTGACGAGTCATAGTCTACAAATATATATTTTTTATCGCGCTACTACAACCCTTGCTCCTTCTTCTGTCAATGATTGTCCTACCCATATAAGCCTACTCATGGCGGAGACCAAAATTATATACCATATCGACGAAGAAGAAACCCCTTATTTAGTGAAACTGACGGTTTCTCCGGAAAAAGTCACGTTGGCGGATTTTAAAAATGTCCTTAACAACCGTCCGGTCAACAGTTATAAATTCTTTTTCAAATCTATGGATCAGGATTTCGGAGTCGTCAAAGAGGAAATCTCTGATGATAACGCCAAGCTGCCCTGCTTCAACGGCAGAGTGGTGTCCTGGTGTCACAGCAAGCTGTTCTCACCAACCTTATGTTTCTTTTCTGCCCTGAGCAAAAGCTTTCCACCCACTCTACTAGAATATCTGGCCTTTGGCATATCCGCATACACTTATGTATTCTCACACCGCATCACGGCCCCATTTACCCCCAAAAACCTGCTCTTCTGGGGCCCTACCGCAGCACTGCAGGATTTGAAACTCCTGGGCTGCAGTTCATCCCAGCTGGTCCTAAATGCTCTACATTTCACATGGTGCTTTGGCAAGGTTGTCCCAGTGCTGACCTCTGCTGGGTGTGATTGCATGAAAAATATGTGTTTGGTTATTAGGAAGGCCAGACAGACATATACTAAAGTGAGCCTAAAAGCACTCCGGAGAGCCTATAAATGCATTTCCCACCTGTGGATTATCCTCTCTGATAAAGGGCTCCTGATAGGCTGTTTCACACAGCTGCAGGCGTACAGCTCATCTCGCCGCAGGCCTCTGCTTGTACCCTCAATCGCTGAGGTGATACAATTGTCCTGTGAACTCACACATGGCAGAGGAATGAAAAAGCTTCCTCTTGGCTATGTGGAGAGTAATGGTCTGAAATGGGCACCCCTGCAATACTGGAATGCTTTGGTCGCACTCGGGGTCCACAGCGGTCTTATCGTTTGGTCAGACCTTTTCAGCGCATCCGATGTCACCCAGAGACGCAACTTCGTCCCTGTCTCTGTACTCCCTCGCGTGAACGGTCATTCGAAATCGGAGCGCGTGAACCGCGACTCAGCTGTTTGCTATGACAGTGCTTCAGTGATGAGCAGCGAGCTGGAATCCAGCTCTTTCATAGAAAGTGAGGAGGATGAGGATGCCAGCAGACTTAGCAGTTCGACCGAGCAGAGCTCTTCATCACACCTCATGCGTAGACACAAACGCAGGCGACGAAGACAGAAAGTCACCAAAATGGACAGGTCCTCATCCTTTAGTAGTATTACAGACTCCACAATGAGCCTCAACATTATCACAGTCACTCTCAACATGGAAAAGTACAACTTCCTTGGTATCAGTATTGTGGGTCAAAGTAATGACAGAGGAGATGGGGGCATCTATATTGGCTCCATTATGAAAGGTGGAGCAGTGGCGGCTGATGGCAGGATTGAGCCTGGAGACATGCTGTTACAGGACATTGTGGTCATATCAGTTGTCATTTACCGCAGTGGACAGTATGGTGCTTTCAACTCTTTTGTCATTTATTTACATAACAAAGGGTTTTTCCTCAGCCTGGTGAATGATGTGAACTTTGAGAACATGAGTAATGATGATGCTGTCAGGATTCTACGGGAGATCGTATCTAAACCTGGGCCAATAAGCCTAACAGTGGCAAAATGTTGGGACCCCTCTCCTAGAAGCTACTTCACCATCCCTAGAGCTGAGCCAGTGAGACCCATTGACCCTGCTGCCTGGATCACACACACTACAGCACTTTCTGGGCCGTACCCCCATTATGAGTTTGATGACCTTCCACTTTCTGTGTCAAAAACAGACATGGCAACTATAGTAAAAGTAATGCAGCTACCAGATTCAGGCCTGGAGATCCGAGACCGAATGTGGTTAAAGATCACTATAGCCAACGCTGTCATCGGTTTGTGTTATTCTTTGCTGTGGTTGTATATTGCAAACATTTGGTATAATCAATATATGGCTTCTCTCAATCTTAATGAGGGATCCAGTGGTGGCGGCTCTGACCAAGATGGTCTCGCTCCTCTTCCTCCACCAGGAACCAACCCCTGGCCCCTCGGTGGGCAGCCCTACCCCTACCCAGGTTACCCCACTCCTCCGCCAGGCTTTCCTCCTGGATACTCGGACCCCTGCCACAGTTTCCACAGTGGCAGTGCAGGCAGCCAGCAGAGTGAAGGTAGCAGAAGCAGTGGCTCCAACCCCAGCGCTGGGAAAGGACGGAGACCCTCCCCTCGAGAGAAGGACCATAAGGCGCCGTGCTGTGGGGGCAGCGAATCAGAACTGGGCACGTGGGTCGGAAGGAGGGGTGAGAGGGCACCCAGTCAGCTGAGTCATCAAAGCCACAGCCGCTCTGCTGTCAGTCAAGCCCACTCCAGCCACAGCTACACTCACTCTGGGTACAGTCTTGGCCAGTGTCACAGTGTTTCGCAACATAGTCACAACTTCACCTACAGCCACGCCCCTTTCATTCAGCCCAATCATCTGACCTGTGCCCACAGTGAGAGAAGTCACGGCTCTTCCTACGGCCCGCCGGGTCTGCCCCCTCCGTACTGCCTTGCTCACCTCGCCCCCAAAGCGGCAGCAAGCAACAGCCCACCCGGGGCTCCACCCGTTCGGGAGTTAGGAAACGTCCCCCCAGAACTCACGGCTAGTCGGCAGTCTTTTCAACACGCTATGGGCAATCCTTGTGAATTTTTCGTTGATATTATGTGACAGGACAGTGCCTTCAACCCTTTCAGAGCACAAGGCCTAGTTCCCACAGTTTGCTTCATGAATTTTTGCTACTGACGATCCCTGCACTGAGAATGCACAAACTGACAGCCCGATTTAAATTACCCAATAATGAAAATTGTCATTTACTCTCATTTATCCTCATGTTGAGTTTCTTCCTTCTGTGGAACAAAATAATCGGTGTTATTGTTAATTACAACTAAAAAACTATCGTTTCA

Function

symbol description
dvl1b Predicted to enable frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway and planar cell polarity pathway involved in neural tube closure. Predicted to act upstream of or within Wnt signaling pathway and intracellular signal transduction. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2. Orthologous to human DVL1 (dishevelled segment polarity protein 1).
dvl1a Predicted to enable frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway and planar cell polarity pathway involved in neural tube closure. Predicted to act upstream of or within Wnt signaling pathway and intracellular signal transduction. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2. Orthologous to human DVL1 (dishevelled segment polarity protein 1).
dvl1 Enables frizzled binding activity; identical protein binding activity; and protein kinase binding activity. Involved in several processes, including Wnt signaling pathway; protein stabilization; and regulation of cellular protein metabolic process. Located in cytoplasmic vesicle; growth cone; and lateral plasma membrane. Implicated in DiGeorge syndrome and autosomal dominant Robinow syndrome 2.

GO:

id name namespace
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_12006266_12048809.mRNA True 3505 mRNA 0.47 18 12005928 12049045

Neighbor

gene id symbol gene type direction distance location
CI01000001_11994138_12003906 NA coding upstream 1828 11994138 ~ 12004100 (+)
CI01000001_11990189_11991073 AURKAIP1 coding upstream 14733 11988077 ~ 11991195 (+)
CI01000001_11898621_11898914 NA coding upstream 105740 11898297 ~ 11900188 (+)
CI01000001_11809724_11812692 LZIC coding upstream 192484 11809427 ~ 11813444 (+)
CI01000001_11756218_11760009 NA coding upstream 244431 11756161 ~ 11761497 (+)
CI01000001_12058281_12060612 NA coding downstream 8710 12057755 ~ 12061261 (+)
CI01000001_12088244_12091260 NA coding downstream 39122 12088167 ~ 12091494 (+)
CI01000001_12280407_12327837 NA coding downstream 229726 12278771 ~ 12327954 (+)
CI01000001_12486765_12495297 DCJ11, DNAJC11A, DNAJC11 coding downstream 436501 12485546 ~ 12495518 (+)
CI01000001_12503839_12514653 ASXL1 coding downstream 454483 12503528 ~ 12515328 (+)
G19512 NA non-coding upstream 13553 11992032 ~ 11992375 (+)
G19469 NA non-coding upstream 38559 11907617 ~ 11967369 (+)
G19490 NA non-coding upstream 117418 11888104 ~ 11888510 (+)
G19489 NA non-coding upstream 118045 11887468 ~ 11887883 (+)
G19488 NA non-coding upstream 118727 11886948 ~ 11887201 (+)
G19473 NA non-coding downstream 5883 12054928 ~ 12055598 (+)
G19538 NA non-coding downstream 60518 12109563 ~ 12481405 (+)
G19548 NA non-coding downstream 94575 12143620 ~ 12144142 (+)
G19621 NA non-coding downstream 255968 12305013 ~ 12369030 (+)
G19673 NA non-coding downstream 473628 12522673 ~ 12538554 (+)
G19395 NA other upstream 324111 11681322 ~ 11681817 (+)
G19314 NA other upstream 447255 11501194 ~ 11558673 (+)
G19039 NA other upstream 1151945 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1466082 10538388 ~ 10539846 (+)
G18937 NA other upstream 1529539 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1464359 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location