G19673


Basic Information

Item Value
gene id G19673
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12522673 ~ 12538554 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU22098
TTTATTTTATCAACAACATGGGCAAAGACTATCCATATGCAGCAACCACTAACACAGAGACATTTACAAAATAAATATGCAACAAGATCTCCATTCAATTTGTTCTTAAATACTAAATAAATAACAATAAATACATCATATCTGTTCAACCCACTTCACTCTGGAGGGTGTCAAAATACTTTTATGGAAAACAGAACTCATTAAATAAATGAGAATATTAAAAAACAATATAAAAATTGTTAGGTAGAAAATATTTGCACTTAAAAAAGAGATTATAAATCTCTGTCTTTAAAATAAATAGGAAGGTTTATAAAACAATTTGCTGTCGATATTCTTAAAATATTGCCTCTTTCACAGCGCAGAGGGCAACGTCTCTCCTCTTAATAACTGTCTAAAAGCTGTGTATAGAATTTTGCTTTGTGAAATAAATTAAGTCCATAAATAGACACTGATTAATAAATAAACAAAATAAACCTTAACATGAATAAATAATAAATTAAACTTACATTTCAAGGACCCAATTTAAATAGCCATAATAATAATAATAATAATAATTACAATAATAACATGACGATGGAACTACAAACTATTCATGGTAGTGCAATATCTATGTTCTCAAATACGATAAATATTACTGAATGGAACAGGAACACATTTACACCAAATATGAGACAACATTATCATACAGGGATCGAATGTAGCAGTGCTGCATACTAATCTTATTTTGTTGAGGGAGGTCATTAATCATCAATTCACCTTCGGACATTACACATAAAGCACTCTGTTACGCATACACACATAGACTCACCCCCACAGACACACGACAATCTCATGACTTATTGTTCACGGCAACCTCCATGCACTGAGGGAAGTAAGAAAGGCAGATCAGTGTCGGTGAGAGTTGCTCTAGAAAACAGTAACAAATGGTTTGCTCCAAAAAATACCCCAAAAGAAGAAGAGCCGTCTTGGTTTAAGAGGCAAAGGATCTCGTATGTCATCAAAATTGCTAAGCAGCATAATTTGGAATTTGGTCCTTTTCTCTGTCTTCCACGGGTCTCGTGACGATCCTCGTTTTCAGAGGGTGCCACATACAAAACCTGAATGTCCTTAAACAGTATTTTTATGTTGTTGGTCTGGTTATTCAACCCACAGTGTCTTGCAGCCGCCGCTCCTCTGCTCACACCTCGATGCCTTTGACGGCCTGGTTGATCGACTCGAGTAGGGCTCGGTTCTCTGGGTTCTGATAGCACTCCTTATCGGTGAACATGTGGGTCAGCGTATCCACGTATGTGTCAAAATTCTGCTCAGTGATGGGCTCTTGCATCTGTGGTAGACGGATGTTGGCAAGGCTGCGGATAAGAGCCTGGCTCAGGCCTGACAGTTCCATGAACAGAGCCTCATTCTTCTCCTCTATGAGCTTATTCTCTTCCTCCATGCTCTTGAGGTTCTTCTCCATGGATGAGATCTGTGTATGGAGGTTGGCCATGTCTGCTTCCATTTCAGAGTTTGACTCATTCAGCTCATTGATCTCTTTGTTCAGCTGTTTTATGTCTTCATCATTGTCAAGAACATCACTTGCCCTGAATTTCTTGCTGATGTAGTCATCTCCTGGGAACCTGGTTCTCTTCTTGTTAGCTGAAGCTCTAGGGCAACCTGATAAACTGCGATGAGTGAGAAAGCTGCCGTTGGCATGTCCTGATCCATCACATCCTGGCGTGGGGCAGGTCGGGCCCTCAGTCTTGAAGGCCTTCCAGGAGAATGGTGTGCCATTTAACATGCCCTCCTTCTGCCGGCGTGCTGCCAGCGGGCACCCATAGGCACTGCGGTGGGTGGCGTATTTCCCACTGATATGCCCCAGACTGTCACAACCTGGCACCGGGCACTTTAGGAGTTCAGAATCTTCCTTGTCATCCTTTGTTGGGGTTGTTTTGATTCCTCCCTTCTTGGCACGTGGACATCCAGACAGACTTCTATGGGAAGCATAGTTTCCAGTGATGTGTCCTGATCCATCACAACCTGGAGTAGGGCATTTGAGTTCAGCAGTGTGGGCAGCCATGAGGGTCCGAAGACTTTTATCAGCAAGGGGACAACCAGAGAGACTGCGGTGAGATGCATAGTTTCCAGTTATATGTCCACTACCATCACAACCTGGGGTGGGACATAGCAAGACCTCTTTCTTGCAGTCCTTGGGCTGAAATTTGACTTTGAAGCTGGAGGTTGTGACCTCACCAGGGTACTTCCTGTCCTCCATGCTCTCCTGAGTGGCATCATCATCTTCTCCGTCAGAGGAGGCATATGAATGTGTGGTGTACTCCACCTCCTCTGGCTCCTCCTCTTTTTGTCGGTTTGACTTGGTGTAATCCAGAGGCCCCTCCCACTCCTCTTGTTTATAGGTGTGGCTGGAGTGGGGTGAGGTGACGCCATGATGTTGAGAAGATGATGACGAGGATGAAGATGGGTCTGGTGACCTGACTCCTTCCCTCTTGGGTTTCTTCATGCTGAGGTCCAGAGTGCCATTTTCATCCACCTCAATGTCCATGTCTTTGCTGGCCTGATCTGGCTGTCGAGTGCTGAGGTTTTCAGGTCTCTCCCAGCAGCGGGTGGACAGGTTGAGAATGGCAGTGGCAGCCATGTGTGCGGCTTCGGCATCATGGGTATAATCGTACCCACTGGAGGTGGAAGAGGAGCTGCTTTTGGTGTAGCCTCCAGACAGGCTGTGGCTTGGGGATGGGGATTTGAAGGCTTTAGGTGAGGTTTCGCTGGTGGGCATCTTGGGGGCAAGCATGCGCTTGCCAAATACCTGTACATCAAAGCTTGCATAGTCAAAGGACACCTTGGAATACTTCTCCAGCTCCTTGGCCAGGTTGGCCCGAGGAGTGGCCGGCATGGCATTGGGCCTGTAGCTACCGTACTGAGGGATCTCCAGCTGTTTCACAAAACACATTGGCCTGAGAACTCTGTCAGAGTTTGAGCCTCCAGTGGCTGGATCACTGACAGAGGTCTGCGGCTGTGCCTGCTTTTCATGGCTTTTGTGTTTCCCTGCAGCAGCAATAGGGCAGCCAGAGAGACTGCGATGTGTGTTGCGGTTGCTGTTCACATGTCCCTGTCCAGTGCATCCAGGTGTTGGACACTTCAGTACGTTCTCATGCATTGCCAAGATCTCTGGAGGGATTCTGTCCTTGTGTGGGCACCCAGAAAGGCTGCGGTGGTGTGGGTATAATCCAGTCACATGACCTGTCCCATCACATCCTGGAGTAGGGCACTTTACTTCCTTCTTCTCTGATCTAGAACCTTCTTTGCCATAGTATGCTCTACGCGCGGCGATGTCCATGGCCTTACTCATCCTCTCCTCTGGGCTGTGGTAGCGCTGCTGCTCAGGAGAGCAGCTCTCTTCAGAACTGCGGCCATTTTGTTCAGCTTTCAGTGCAATGGCCTGTTCCAGAAGTCCCAGGTTCCCTCGTGTCATGTCGTACGTCTCTGAGTCATCTGTGACCTCTGACCTCTGTGACATGCTGTCTAACTCGTCATCGTCTACTTCATCTGCCTCCTCTTCTTCTCCGTCATCTTCCTCTTCCTCTTCTTCCTCTTCCTCTCCCTCTGAACCCAGCTCAATGACTACAGTTGGTGAGTCTTTCTCTGAAGCGTCATCCTCCTCCTCCTCCTCTTCCTCCTCCTCATCTTCACCAAGAGGATGGATGTTGCTGTGTGTCATCACATCTAATTCCTGAGCTGAAGCAGCGGGGGCAGGGGCGATTAGGGAGGAAGGCTCTACCTGGGATTGTTCCTCCTCCTCATCTCCTTCCTCATCATCATCTTCACTGTCCTTCTGTGTCTCCCCAGTCTCTTTGGTCTGGATTTTGCCAAAGTCTCCACTGAAGTACTGGTGGTCCGAGTTGTTCTTCTGGCTCAGACATTGTGTTTCCTCTTCACCCTCTTCCTCGTCCTCATCATCCTCCTCCTCTTCTTCCTCAACTGTTGTCACAGGCTCGTCGGTCTCTTTCAGTTGCTGGGTCACTCGCTCCTCTTCCGTAATCTCTTCTGCTTCCTCCTCTATCTCTTCTTCTCGAGCTTGAATCTCTTCGGCGACCTGTAGCTCCTCCTCTGGCTCGGTATCCATTGTGATTTGTTGGATGGGCGTGGTCTCAATATTGGCTTCCTCTTTCTCAATTTCGTTCTCTGGCACTGGACTTGATGTTTCTCGGACAGGCGTCTTTTTCTCTTCTAAATCCATTTGTAAACTTTCTTCTGTCATTGCTTCTAATGTAGGTGTCTTTTCTTTCACCTCCATCTCTTTATCAACAGTGTCCTCTTCAGACTCCACTCCATCATCTTTTGCTTCTGTTTCACTGTTTGTGTCGCTGTCTGCATTGAACCCATCATCCATGGCCAGCTTTAGGGGGTTGGGTTTCTTTTTTGGGGCTGGCTGATTCTCCTCAGCCTCCTGGAGTTTTCTTTTCTTAGCCAATGGGCAGCCCAATGCACTTCTGTGTCGTGCATACTTTCCGCTGACATGGCCTAGGCCGTCGCATCCTGGAGTAGGGCAGCTGTAATCTTGTCCAACAAGCTCAAGAGGAACTCTGATTCCTTTTGAGCGTGTCCTTGTCCGCTTCTCATCTGCGTCTTGGCTCATTTTGAGTCTCCTACTCCTCTTGTTCTCACAGCTGCTAACTCTATCCCCTCGTGTCCACCTCTGGCTCAGCAGCTGCCCCCTGAACTCATTCTCGAGAAAAGTTTTACACAACTTCATCTTTGCGGTGATTTCTTCGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU22098 True 4768 lncRNA 0.39 23 12522673 12538554

Neighbor

gene id symbol gene type direction distance location
CI01000001_12503839_12514653 ASXL1 coding upstream 7345 12503528 ~ 12515328 (+)
CI01000001_12486765_12495297 DCJ11, DNAJC11A, DNAJC11 coding upstream 27155 12485546 ~ 12495518 (+)
CI01000001_12280407_12327837 NA coding upstream 194719 12278771 ~ 12327954 (+)
CI01000001_12088244_12091260 NA coding upstream 431179 12088167 ~ 12091494 (+)
CI01000001_12058281_12060612 NA coding upstream 461412 12057755 ~ 12061261 (+)
CI01000001_12556923_12557900 NPBWR2 coding downstream 17629 12556183 ~ 12558099 (+)
CI01000001_12568625_12571184 NA coding downstream 29980 12568534 ~ 12571943 (+)
CI01000001_12580225_12599311 NA coding downstream 41420 12579974 ~ 12599587 (+)
CI01000001_12602382_12613489 CABLES2A coding downstream 63407 12601961 ~ 12613938 (+)
CI01000001_12633655_12648702 NA coding downstream 94644 12633198 ~ 12649116 (+)
G19538 NA non-coding upstream 41268 12109563 ~ 12481405 (+)
G19621 NA non-coding upstream 153643 12305013 ~ 12369030 (+)
G19548 NA non-coding upstream 378531 12143620 ~ 12144142 (+)
G19473 NA non-coding upstream 467075 12054928 ~ 12055598 (+)
G19512 NA non-coding upstream 530298 11992032 ~ 11992375 (+)
G19697 NA non-coding downstream 7396 12545950 ~ 12546380 (+)
G19702 NA non-coding downstream 13473 12552027 ~ 12552458 (+)
G19704 NA non-coding downstream 16545 12555099 ~ 12555464 (+)
G19717 NA non-coding downstream 38651 12577205 ~ 12577419 (+)
G19718 NA non-coding downstream 38960 12577514 ~ 12577925 (+)
G19395 NA other upstream 840856 11681322 ~ 11681817 (+)
G19314 NA other upstream 964000 11501194 ~ 11558673 (+)
G19039 NA other upstream 1668690 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1982827 10538388 ~ 10539846 (+)
G18937 NA other upstream 2046284 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 974850 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location