RNA id: TU22098


Basic Information

Item Value
RNA id TU22098
length 4768
lncRNA type antisense_over
GC content 0.39
exon number 23
gene id G19673
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12522673 ~ 12538554 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATTTTATCAACAACATGGGCAAAGACTATCCATATGCAGCAACCACTAACACAGAGACATTTACAAAATAAATATGCAACAAGATCTCCATTCAATTTGTTCTTAAATACTAAATAAATAACAATAAATACATCATATCTGTTCAACCCACTTCACTCTGGAGGGTGTCAAAATACTTTTATGGAAAACAGAACTCATTAAATAAATGAGAATATTAAAAAACAATATAAAAATTGTTAGGTAGAAAATATTTGCACTTAAAAAAGAGATTATAAATCTCTGTCTTTAAAATAAATAGGAAGGTTTATAAAACAATTTGCTGTCGATATTCTTAAAATATTGCCTCTTTCACAGCGCAGAGGGCAACGTCTCTCCTCTTAATAACTGTCTAAAAGCTGTGTATAGAATTTTGCTTTGTGAAATAAATTAAGTCCATAAATAGACACTGATTAATAAATAAACAAAATAAACCTTAACATGAATAAATAATAAATTAAACTTACATTTCAAGGACCCAATTTAAATAGCCATAATAATAATAATAATAATAATTACAATAATAACATGACGATGGAACTACAAACTATTCATGGTAGTGCAATATCTATGTTCTCAAATACGATAAATATTACTGAATGGAACAGGAACACATTTACACCAAATATGAGACAACATTATCATACAGGGATCGAATGTAGCAGTGCTGCATACTAATCTTATTTTGTTGAGGGAGGTCATTAATCATCAATTCACCTTCGGACATTACACATAAAGCACTCTGTTACGCATACACACATAGACTCACCCCCACAGACACACGACAATCTCATGACTTATTGTTCACGGCAACCTCCATGCACTGAGGGAAGTAAGAAAGGCAGATCAGTGTCGGTGAGAGTTGCTCTAGAAAACAGTAACAAATGGTTTGCTCCAAAAAATACCCCAAAAGAAGAAGAGCCGTCTTGGTTTAAGAGGCAAAGGATCTCGTATGTCATCAAAATTGCTAAGCAGCATAATTTGGAATTTGGTCCTTTTCTCTGTCTTCCACGGGTCTCGTGACGATCCTCGTTTTCAGAGGGTGCCACATACAAAACCTGAATGTCCTTAAACAGTATTTTTATGTTGTTGGTCTGGTTATTCAACCCACAGTGTCTTGCAGCCGCCGCTCCTCTGCTCACACCTCGATGCCTTTGACGGCCTGGTTGATCGACTCGAGTAGGGCTCGGTTCTCTGGGTTCTGATAGCACTCCTTATCGGTGAACATGTGGGTCAGCGTATCCACGTATGTGTCAAAATTCTGCTCAGTGATGGGCTCTTGCATCTGTGGTAGACGGATGTTGGCAAGGCTGCGGATAAGAGCCTGGCTCAGGCCTGACAGTTCCATGAACAGAGCCTCATTCTTCTCCTCTATGAGCTTATTCTCTTCCTCCATGCTCTTGAGGTTCTTCTCCATGGATGAGATCTGTGTATGGAGGTTGGCCATGTCTGCTTCCATTTCAGAGTTTGACTCATTCAGCTCATTGATCTCTTTGTTCAGCTGTTTTATGTCTTCATCATTGTCAAGAACATCACTTGCCCTGAATTTCTTGCTGATGTAGTCATCTCCTGGGAACCTGGTTCTCTTCTTGTTAGCTGAAGCTCTAGGGCAACCTGATAAACTGCGATGAGTGAGAAAGCTGCCGTTGGCATGTCCTGATCCATCACATCCTGGCGTGGGGCAGGTCGGGCCCTCAGTCTTGAAGGCCTTCCAGGAGAATGGTGTGCCATTTAACATGCCCTCCTTCTGCCGGCGTGCTGCCAGCGGGCACCCATAGGCACTGCGGTGGGTGGCGTATTTCCCACTGATATGCCCCAGACTGTCACAACCTGGCACCGGGCACTTTAGGAGTTCAGAATCTTCCTTGTCATCCTTTGTTGGGGTTGTTTTGATTCCTCCCTTCTTGGCACGTGGACATCCAGACAGACTTCTATGGGAAGCATAGTTTCCAGTGATGTGTCCTGATCCATCACAACCTGGAGTAGGGCATTTGAGTTCAGCAGTGTGGGCAGCCATGAGGGTCCGAAGACTTTTATCAGCAAGGGGACAACCAGAGAGACTGCGGTGAGATGCATAGTTTCCAGTTATATGTCCACTACCATCACAACCTGGGGTGGGACATAGCAAGACCTCTTTCTTGCAGTCCTTGGGCTGAAATTTGACTTTGAAGCTGGAGGTTGTGACCTCACCAGGGTACTTCCTGTCCTCCATGCTCTCCTGAGTGGCATCATCATCTTCTCCGTCAGAGGAGGCATATGAATGTGTGGTGTACTCCACCTCCTCTGGCTCCTCCTCTTTTTGTCGGTTTGACTTGGTGTAATCCAGAGGCCCCTCCCACTCCTCTTGTTTATAGGTGTGGCTGGAGTGGGGTGAGGTGACGCCATGATGTTGAGAAGATGATGACGAGGATGAAGATGGGTCTGGTGACCTGACTCCTTCCCTCTTGGGTTTCTTCATGCTGAGGTCCAGAGTGCCATTTTCATCCACCTCAATGTCCATGTCTTTGCTGGCCTGATCTGGCTGTCGAGTGCTGAGGTTTTCAGGTCTCTCCCAGCAGCGGGTGGACAGGTTGAGAATGGCAGTGGCAGCCATGTGTGCGGCTTCGGCATCATGGGTATAATCGTACCCACTGGAGGTGGAAGAGGAGCTGCTTTTGGTGTAGCCTCCAGACAGGCTGTGGCTTGGGGATGGGGATTTGAAGGCTTTAGGTGAGGTTTCGCTGGTGGGCATCTTGGGGGCAAGCATGCGCTTGCCAAATACCTGTACATCAAAGCTTGCATAGTCAAAGGACACCTTGGAATACTTCTCCAGCTCCTTGGCCAGGTTGGCCCGAGGAGTGGCCGGCATGGCATTGGGCCTGTAGCTACCGTACTGAGGGATCTCCAGCTGTTTCACAAAACACATTGGCCTGAGAACTCTGTCAGAGTTTGAGCCTCCAGTGGCTGGATCACTGACAGAGGTCTGCGGCTGTGCCTGCTTTTCATGGCTTTTGTGTTTCCCTGCAGCAGCAATAGGGCAGCCAGAGAGACTGCGATGTGTGTTGCGGTTGCTGTTCACATGTCCCTGTCCAGTGCATCCAGGTGTTGGACACTTCAGTACGTTCTCATGCATTGCCAAGATCTCTGGAGGGATTCTGTCCTTGTGTGGGCACCCAGAAAGGCTGCGGTGGTGTGGGTATAATCCAGTCACATGACCTGTCCCATCACATCCTGGAGTAGGGCACTTTACTTCCTTCTTCTCTGATCTAGAACCTTCTTTGCCATAGTATGCTCTACGCGCGGCGATGTCCATGGCCTTACTCATCCTCTCCTCTGGGCTGTGGTAGCGCTGCTGCTCAGGAGAGCAGCTCTCTTCAGAACTGCGGCCATTTTGTTCAGCTTTCAGTGCAATGGCCTGTTCCAGAAGTCCCAGGTTCCCTCGTGTCATGTCGTACGTCTCTGAGTCATCTGTGACCTCTGACCTCTGTGACATGCTGTCTAACTCGTCATCGTCTACTTCATCTGCCTCCTCTTCTTCTCCGTCATCTTCCTCTTCCTCTTCTTCCTCTTCCTCTCCCTCTGAACCCAGCTCAATGACTACAGTTGGTGAGTCTTTCTCTGAAGCGTCATCCTCCTCCTCCTCCTCTTCCTCCTCCTCATCTTCACCAAGAGGATGGATGTTGCTGTGTGTCATCACATCTAATTCCTGAGCTGAAGCAGCGGGGGCAGGGGCGATTAGGGAGGAAGGCTCTACCTGGGATTGTTCCTCCTCCTCATCTCCTTCCTCATCATCATCTTCACTGTCCTTCTGTGTCTCCCCAGTCTCTTTGGTCTGGATTTTGCCAAAGTCTCCACTGAAGTACTGGTGGTCCGAGTTGTTCTTCTGGCTCAGACATTGTGTTTCCTCTTCACCCTCTTCCTCGTCCTCATCATCCTCCTCCTCTTCTTCCTCAACTGTTGTCACAGGCTCGTCGGTCTCTTTCAGTTGCTGGGTCACTCGCTCCTCTTCCGTAATCTCTTCTGCTTCCTCCTCTATCTCTTCTTCTCGAGCTTGAATCTCTTCGGCGACCTGTAGCTCCTCCTCTGGCTCGGTATCCATTGTGATTTGTTGGATGGGCGTGGTCTCAATATTGGCTTCCTCTTTCTCAATTTCGTTCTCTGGCACTGGACTTGATGTTTCTCGGACAGGCGTCTTTTTCTCTTCTAAATCCATTTGTAAACTTTCTTCTGTCATTGCTTCTAATGTAGGTGTCTTTTCTTTCACCTCCATCTCTTTATCAACAGTGTCCTCTTCAGACTCCACTCCATCATCTTTTGCTTCTGTTTCACTGTTTGTGTCGCTGTCTGCATTGAACCCATCATCCATGGCCAGCTTTAGGGGGTTGGGTTTCTTTTTTGGGGCTGGCTGATTCTCCTCAGCCTCCTGGAGTTTTCTTTTCTTAGCCAATGGGCAGCCCAATGCACTTCTGTGTCGTGCATACTTTCCGCTGACATGGCCTAGGCCGTCGCATCCTGGAGTAGGGCAGCTGTAATCTTGTCCAACAAGCTCAAGAGGAACTCTGATTCCTTTTGAGCGTGTCCTTGTCCGCTTCTCATCTGCGTCTTGGCTCATTTTGAGTCTCCTACTCCTCTTGTTCTCACAGCTGCTAACTCTATCCCCTCGTGTCCACCTCTGGCTCAGCAGCTGCCCCCTGAACTCATTCTCGAGAAAAGTTTTACACAACTTCATCTTTGCGGTGATTTCTTCGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21956 lncRNA upstream 41268 12109563 ~ 12481405 (+) True G19538
TU22044 lncRNA upstream 153643 12305013 ~ 12369030 (+) True G19621
TU21967 lncRNA upstream 378531 12143620 ~ 12144142 (+) True G19548
TU21887 lncRNA upstream 467075 12054928 ~ 12055598 (+) True G19473
TU21926 lncRNA upstream 530298 11992032 ~ 11992375 (+) True G19512
TU22124 lncRNA downstream 7396 12545950 ~ 12546380 (+) True G19697
TU22129 lncRNA downstream 13473 12552027 ~ 12552458 (+) True G19702
TU22131 lncRNA downstream 16545 12555099 ~ 12555464 (+) True G19704
TU22144 lncRNA downstream 38651 12577205 ~ 12577419 (+) True G19717
TU22145 lncRNA downstream 38960 12577514 ~ 12577925 (+) True G19718
CI01000001_12503839_12514653.mRNA mRNA upstream 7345 12503528 ~ 12515328 (+) True CI01000001_12503839_12514653
CI01000001_12486765_12495297.mRNA mRNA upstream 27155 12485546 ~ 12495518 (+) True CI01000001_12486765_12495297
CI01000001_12280407_12327837.mRNA mRNA upstream 194719 12278771 ~ 12327954 (+) True CI01000001_12280407_12327837
CI01000001_12088244_12091260.mRNA mRNA upstream 431179 12088167 ~ 12091494 (+) True CI01000001_12088244_12091260
CI01000001_12058281_12060612.mRNA mRNA upstream 461412 12057755 ~ 12061261 (+) True CI01000001_12058281_12060612
CI01000001_12556923_12557900.mRNA mRNA downstream 17629 12556183 ~ 12558099 (+) True CI01000001_12556923_12557900
CI01000001_12568625_12571184.mRNA mRNA downstream 29980 12568534 ~ 12571943 (+) True CI01000001_12568625_12571184
CI01000001_12580225_12599311.mRNA mRNA downstream 41420 12579974 ~ 12599587 (+) True CI01000001_12580225_12599311
CI01000001_12602382_12613489.mRNA mRNA downstream 63407 12601961 ~ 12613938 (+) True CI01000001_12602382_12613489
CI01000001_12633655_12648702.mRNA mRNA downstream 94644 12633198 ~ 12649116 (+) True CI01000001_12633655_12648702
TU21803 other upstream 840856 11681322 ~ 11681817 (+) True G19395
TU21702 other upstream 964000 11501194 ~ 11558673 (+) True G19314
TU21382 other upstream 1668690 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 1982827 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 1982923 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU22314 other downstream 974850 13513404 ~ 13513609 (+) True G19868

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044288 False 4071 mRNA 0.50 23 NC_007134.7 30767310 ~ 30787932 (-)