RNA id: TCONS_00044288


Basic Information

Item Value
RNA id TCONS_00044288
length 4071
RNA type mRNA
GC content 0.50
exon number 23
gene id XLOC_022457
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30767310 ~ 30787932 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTTCTCTGTGATTAAGTTTAGTAGTTTTGCGGTGTCAAAGGCGAAGGAATCACCGCAAAGATGAAGTTGTGTAAAACTTTCCTCGAAAATGAGTTCAGAGGGCAGCTGCTGAGCCAGAGGTGGACACGAGGGGACAGAGTCAGCAGCTGTGAGAGCAAGAGGAGTAGGAGACAAAAAATGAGCCAAGACGCAGATGATAAGCGGACAAGGACACGCTCAAAAGGAATCAGAGTTCCTCTTGAGCTTGTCGGACAAGAATACAGCTGCCCTACTCCGGGATGCGATGGTTTAGGCCATGTCAGTGGAAAGTATGCACGACATAGAAGTGCACTGGGCTGCCCGTTGGCCAAGAAAAGAAAACTCCAGGAAGCTGAAGAGAATCTGCCAGCCCCTAAAAAAAAGCCTAATCTCCTAAAGCTGGCCATGGATGATGGGTTCAATGCAGATAGTGACACAAACAGTGAAACCGAAACAAAAGATGAGGGAGTGGAGTCTGAAGAAGACACTGCTGATAAGGTGATGGAGGTGAAGGAAAAGTCACCTGCATCAGAAGCAATGACAGaaGAAAGTTCACAAGTGAACTTAGAAGAGAAAGAGACACCAATCAGACAAACAAGTCCAGTGCCAGAGATTGAAATTGAAAAGGAGGAGGCCAATATTGAGAGCACGCCCATCCAGCAAATCACCATGGATACCGAGGCAGAGGAGGAGCTACAGGTTGCTGAAGAGATTCAGGCAAGAGAGGAAGAGGTTGAGGAGGAAGCAGAAGAGATTACAGAAGAGGAGCGAGTGACCCAGCAGCTGAAAGAGACCGACGAGCCTGTGACAACAGttgaggaagaagaggaggacgATGAGGAAGATGAAGAGGGGGAGGAGGAAACACAATGTTTGAGCCAGAAGAACAACTCGGACCACCAGTACTTCAGCGGTGACTTTGGCAAAATGCAGACCAAAGAGACTGGGGAGCTGGAGAGGGACAGTGAAGATGAGGATGAGGAAggagatgaggaggaggaggaagaacaATCCCAAGTAGAGCCTTCCTCCCTAATGGCCCCCGTACCCACTGTTTCAGCTCAGGAATTAGATGTGATGACACATGGCAACATAAATCTAGACCATCATCTTGGCgaagatgaggaggaggaggaggatgaagatgagagAGACGATGCTTCAGATAAAGACTCGCCCACTGTAGTCATCGAGCTCGGTTCAGATggagaggaagaggaagaagaggaagaggaggatgacggagaggaggaggaggaggagattgATGAAGCAGATGATGATGATTTAGACAGCATGTcacagaggtcagaggtcactgATGACTCGGAGACATACGACATGACACGAGGGAACCTGGGACTCCTGGAACAGGCCATTGCACTTAAAGCTGAACAAACCGGCCACAGTTCTGAAGAGAGCTACTCTCCTGAGCAGCAGCCCTACCACAGCTTAGACGACAGGACGAGTAAGGTCATGGACATCGCCGCTCGGAGAGCATACTATGGCAAAGACGGTTCTAGATTAGAGAAGAAGGAAGTAAAGTGCCCTACTCCAGGATGTGATGGCACAGGTCATGTGACTGGACTATATCCACACCACCGCAGCCTTTCTGGGTGCCCACACAAGGACAGAATCCCTCCAGAGATCTTGGCAATGCATGAGAACGTACTGAAGTGTCCCACACCTGGATGCACTGGGCAGGGACACGTGAACAGCAACCGCAATACACATCGCAGCCTCTCTGGATGTCCTATTGCTGCTGCAGGGAAACACAAAAGCCATGACAAGCAGTCTCAGCCGCAGACCTCTGTCATTGATCCTGCCTCTGTAGGCTCAAACTCTGACAGAGTTCTCAGgccAATGTGTTTTGTAAAGCAGCTGGAGATCCCTCAGTATGGTAGCTACAGGACAAATGCCATGCCGGCTACTCCTCGTGCCAACCTGGCCAAGGAGCTGGAGAAGTATTCCAAGGTGTCCTTTGACTATGCAAGCTTTGATGTACAGGTGTTTGGCAAGCGCATGCTTGCACCTAAGATGCCCACCAGCGAAACCTCACCTAAAGCCTTCAAATCAATATTAATTCCTAAAGCCCCATCCCCAAGCCACAGCCTGTCTGGAGGCTACACCAAAAGCAGCTCCTCTTCCACCTCAAGTGGGTACGACTACACCCATGATGCCGAAGCCGCACACATGGCTGCCACTGCCATCCTCAACCTGTCCACCCGCTGCTGGGAGAGACCCGAAAACCTCAGCACCAGACCACCAGATCAGGCCGGCAAAGACATGGACATTGAGGTGGATGAAAACGGTACACTGGACCTCAGCATGAAAAAACCCAAAAGGGAAGGAGTCAGGTCACCAGATCCATCCTCCTCCTCGTCATCGTCTTCTCAACACCATGGCGTCACCTCGCCTCACTCCAGCCACACCTACAAGCAAGAGGAGTGGGAGGGGCCTCTGGACTACACCAAGTCAAACCGACAGAAAGAGGAGGAGCCAGAGGAGGTGGAGTACACCACACACTCATACGCCTCCTCTGATGGAGAAGATGATGATGGCACTCAGGAGGGAGCAGAGGACAGGACGTACCCCGGTGAGGTCACAACCTCCAGCTATAAGGTCAAATTTCAGCCCAAGGACCTCAAAAAAGAGATCTTGCTATGTCCCACCCCAGGTTGTGATGGCAGTGGGCATATAACTGGGAACTATGCATCTCACCGAAGTCTCTCTGGTTGTCCCCTTGCTGATAAAAGTCTTCGGACCCTCATGGCTGCCCACACTGCTGAACTCAAATGCCCTACCCCAGGTTGTGATGGATCAGGACACATCACTGGAAACTATGCTTCCCATAGAAGTCTGTCTGGATGTCCACGTGCCAAGAAGGGAGGAATCAAAACCACCCCGACAAAGGATGACAAGGAAGACTCTGAGCTCATAAAGTGCCCGGTGCCAGGTTGTGACAGTCTGGGGCATATCAGTGGGAAATACGCCACCCACCGCAGTGCCTATGGGTGCCCGCTGGCAGCACGCCGGCAGAAAGAGGGCATGTTAAATGGCACACCATTCTCCTGGAAGGCCTTCAAGACTGAGGGCCCGACCTGCCCCACGCCGGGATGTGATGGATCAGGACATGCCAATGGCAGCTTCCTCACTCATCGCAGCCTGTCAGGTTGCCCTAGAGCTTCAGCTAACAAGAAGAGAGCCAGGTTCCCAGGAGATGACTACATCAGCAAGAAATTCAGGGCAAGTGATGtGCTAGACAATGATGAAGATATTAAACAGCTAAACAAAGAGATCAATGAACTGAATGAGTCGAACTCTGAGATGGAAGCAGACATGGCCAACCTCCACACACAGATCTCATCCATGGAGAAGAACCTCAAGAGCATGGAGGAGGAGAATAAGCTGATAGAGGAAAAGAATGAGGCTCTGTTCATGGAACTGTCAGGCCTGAGCCAGGCTCTCATCCGCAGCCTTGCCAACATCCGTCTACCACAGATGCAAGAGCCAATCACCGAGCAGAACTTTGACGCCTACGTGGACACGCTGACCCACATGTTTACTGATAAAGAGTGCTATCAAAACCCAGAAAACCGAGCTCTGCTGGAGTCCATCAACCAGGCCGTCAAAGGTATCGAGGTGTGAGCAGCTGAAAGACACTGTGGGTTGAATAACCAGACCAActacgtgaaaaaaaaaaaaactaaaatactgtTTAAGGACATTCAGGTTTTGTATGTGTCGCCCTCTGAGCTGAGGAACGCCACGAGACCCGTGGATTAAAAGAGAAGGACCAAATTCCATTTCCAAAATAATGCTGCTTAGCGATTTTGATGCGATACAAGATCCTTTGCCTCTTAAACCAAGCTGGCTCtacttgttcttcttcttcttctttcggGATATTTTTGGAGCAAAGCATTTGTTACTGTTTTCTAAAGCAACTCTCACCGACACTGATCTGCCTTTCTTACTTCCCTCAGTGCATGGAGGTTGCTGTGAACAATAAGTCGTGAGATTGTCATGTGTGTCTGTTGGGGTGAGTCTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3885 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cranial skeletal system development. Predicted to be active in nucleus. Is expressed in brain; gonad; and midbrain hindbrain boundary neural rod. Orthologous to human MYT1 (myelin transcription factor 1).

Ensembl:

ensembl_id ENSDART00000135771

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045031 lncRNA downstream 708134 30054434 ~ 30059176 (-) True XLOC_022451
TCONS_00045030 lncRNA downstream 708184 30054434 ~ 30059126 (-) False XLOC_022451
TCONS_00045029 lncRNA downstream 756491 30009263 ~ 30010819 (-) True XLOC_022449
TCONS_00044275 lncRNA downstream 866075 29900651 ~ 29901235 (-) True XLOC_022448
TCONS_00044273 lncRNA downstream 922996 29841211 ~ 29844314 (-) True XLOC_022446
TCONS_00045032 lncRNA upstream 118492 30906424 ~ 30921011 (-) True XLOC_022458
TCONS_00044299 lncRNA upstream 465368 31253300 ~ 31266621 (-) True XLOC_022461
TCONS_00044302 lncRNA upstream 505620 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00045033 lncRNA upstream 614000 31401932 ~ 31403708 (-) True XLOC_022465
TCONS_00045034 lncRNA upstream 632879 31420811 ~ 31423522 (-) True XLOC_022466
TCONS_00044287 mRNA downstream 2991 30755804 ~ 30764319 (-) True XLOC_022456
TCONS_00044286 mRNA downstream 39714 30725716 ~ 30727596 (-) True XLOC_022455
TCONS_00044281 mRNA downstream 335977 30061364 ~ 30431333 (-) False XLOC_022452
TCONS_00044282 mRNA downstream 690360 30070994 ~ 30076950 (-) True XLOC_022452
TCONS_00044278 mRNA downstream 726195 30016847 ~ 30041115 (-) False XLOC_022450
TCONS_00044295 mRNA upstream 149825 30937757 ~ 30954738 (-) False XLOC_022459
TCONS_00044296 mRNA upstream 149825 30937757 ~ 30960506 (-) True XLOC_022459
TCONS_00044297 mRNA upstream 253126 31041058 ~ 31060350 (-) False XLOC_022460
TCONS_00044298 mRNA upstream 258453 31046385 ~ 31060350 (-) True XLOC_022460
TCONS_00044300 mRNA upstream 488230 31276162 ~ 31346319 (-) False XLOC_022462
TCONS_00044285 other downstream 68623 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044283 other downstream 68634 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other downstream 159209 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044280 other downstream 721657 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044252 other downstream 1390469 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044303 other upstream 551521 31339453 ~ 31345494 (-) True XLOC_022462
TCONS_00044322 other upstream 853190 31641122 ~ 31648016 (-) False XLOC_022471
TCONS_00044327 other upstream 905436 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044329 other upstream 966820 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044334 other upstream 1015150 31803082 ~ 31804360 (-) True XLOC_022475

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU22098 True 4768 lncRNA 0.39 23 CI01000001 12522673 ~ 12538554 (+)
eurasian perch (Perca fluviatilis) TU22098 False 266 lncRNA 0.38 2 NC_053113.1 11818880 ~ 11819272 (+)