RNA id: TCONS_00044286


Basic Information

Item Value
RNA id TCONS_00044286
length 1627
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_022455
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30725716 ~ 30727596 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAcacaggacttttattttgaaaggctCGGATGAATGGAACCACCAGGGAAACCgaagtaaatgtattttattaagaaaaaaaaactgatttagtGAATAACAAAAGAAATTCCGAATGGTCGTTTACTGCAGACTACactgtaatgtaaatatatatatcaaataatgCAAGAAAGATCTTCAGTTTGAATCATTTTGATACACTGCGGGGCTTTCGACATTCGCCATCTTTGTTCGGGGCAAATATGCCGAAAAGTTGTTCTGCATCTAATTGCACAAATAGGTACAATAACAAAAACCCAGAGATAACTTTTCACAGGTTCCCTTTCAGTAAACCATCGGTTCTGAAACAATGGCTTGATAACATTGGACGAGACGACTTTCAGCCAAGGAAACACATGGTCATCTGCTCTCTTCATTTCACTCCGGACTGTTTCAGTGGTTTGGGAAACCGGAAAAATCTGTTATGGAACGCAGTGCCAACCCTTTTTGCAGTGCCAACCCAGGATGCAAATCAAAATAATTCCAGAAAGAGGCAGAAGAGGGCTTTAAAATCTGCTGCTGAGAAATGGGATGGCATTACACCTGATGGGTTGCCTCTTTTCACTGAGGAGATGCATGAGGACACTCAAGACtgtaacaataatgaagtggctGACTGTCAAAGCACAAAGgtTTTTGCTGCTGCAGACCACACCTATGCCCTCTCGGATGCATGCACAACCAAAGCCCGTCTGTTTAATATTTTAGATGCCAACAGATGGCTGCGGAAAAGGTTGCAGGCCAAATgcagagtgataaaaaggatGAAACTTAAATTGAAAGATGCTCAAAGAGAACTTCTAACTTTGCGTCAACAGATCAGACATCGGCATGTAAATCACTAAAGACATTAACAGATAATAAAAAGTTGAAATCTTAAGTCTTGGCCTTAGAGAAAGAGATTAAACATGTATATTTATCCTAAAGCAGAAGTTTTCCTACTAACTTTTCTGTTCTTTGGATTAGGGCATTGTTTACAGTCTAATTTTTAACGCTTGATAATAAGGTCCCATTAGTTATTGCATTAACCATCACTGAGTAATAATTAGTTTacattgttatttgttattaaaaataaaatgtaaattagttTGTTACCTCAGAAAGCTTAATTATCCAATCAGATTAATTATTATATCTTTCAGCACATTAGAATTTTATGCTTTGAAGACAATGTAGTTGTTTTTGTTGCCCGTGCCTTTGATGCTAGTTCTCCCTGCACCGTTTCAACGTGACTGTCAGAGtctgcctcaatctccgccttgactgcgtcagataaactgcacagtgacagacatgaagcaaGCAGATCATCCTACTacagaactttaccaatgattatttgacagacacacacagcgtGCACATTTACTTTACAATGTTTTTGcacacaaatgtgacaggatacacgttaatatccactgatgtatggatatccgttctgttaatgtacaaaataaacctgatgtaacatccacaaaccgggaaTGAAGCATCTTTTCTAATTGTACTGACAcatggctgtggtgataaagatagtaaaatcgctgtaaatcattacaaacatgcactgttttaaaacga

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-4 Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP3 (THAP domain containing 3).

Ensembl:

ensembl_id ENSDART00000060193

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045031 lncRNA downstream 666540 30054434 ~ 30059176 (-) True XLOC_022451
TCONS_00045030 lncRNA downstream 666590 30054434 ~ 30059126 (-) False XLOC_022451
TCONS_00045029 lncRNA downstream 714897 30009263 ~ 30010819 (-) True XLOC_022449
TCONS_00044275 lncRNA downstream 824481 29900651 ~ 29901235 (-) True XLOC_022448
TCONS_00044273 lncRNA downstream 881402 29841211 ~ 29844314 (-) True XLOC_022446
TCONS_00045032 lncRNA upstream 178828 30906424 ~ 30921011 (-) True XLOC_022458
TCONS_00044299 lncRNA upstream 525704 31253300 ~ 31266621 (-) True XLOC_022461
TCONS_00044302 lncRNA upstream 565956 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00045033 lncRNA upstream 674336 31401932 ~ 31403708 (-) True XLOC_022465
TCONS_00045034 lncRNA upstream 693215 31420811 ~ 31423522 (-) True XLOC_022466
TCONS_00044281 mRNA downstream 294383 30061364 ~ 30431333 (-) False XLOC_022452
TCONS_00044282 mRNA downstream 648766 30070994 ~ 30076950 (-) True XLOC_022452
TCONS_00044276 mRNA downstream 679983 30013240 ~ 30045733 (-) False XLOC_022450
TCONS_00044277 mRNA downstream 680055 30014084 ~ 30045661 (-) False XLOC_022450
TCONS_00044278 mRNA downstream 684601 30016847 ~ 30041115 (-) False XLOC_022450
TCONS_00044287 mRNA upstream 28208 30755804 ~ 30764319 (-) True XLOC_022456
TCONS_00044288 mRNA upstream 39714 30767310 ~ 30787932 (-) False XLOC_022457
TCONS_00044289 mRNA upstream 40117 30767713 ~ 30781510 (-) False XLOC_022457
TCONS_00044291 mRNA upstream 40117 30767713 ~ 30781875 (-) False XLOC_022457
TCONS_00044290 mRNA upstream 40117 30767713 ~ 30781875 (-) False XLOC_022457
TCONS_00044285 other downstream 27029 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044283 other downstream 27040 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other downstream 117615 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044280 other downstream 680063 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044252 other downstream 1348875 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044303 other upstream 611857 31339453 ~ 31345494 (-) True XLOC_022462
TCONS_00044322 other upstream 913526 31641122 ~ 31648016 (-) False XLOC_022471
TCONS_00044327 other upstream 965772 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044329 other upstream 1027156 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044334 other upstream 1075486 31803082 ~ 31804360 (-) True XLOC_022475

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_12496897_12497743.mRNA True 989 mRNA 0.38 4 CI01000001 12496753 ~ 12498096 (-)