RNA id: TCONS_00044276


Basic Information

Item Value
RNA id TCONS_00044276
length 2132
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_022450
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30013240 ~ 30045733 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGGTGGAGGGAGGGAGCAGAAGTTTGTCCGCTCAGGCTTACCATCCCTGTGGAAGTTTCATGCCATTGTTTCGTTGTCTTTCTGGTCGGAAACTTTGAAACTACGTAATTATAGTTCGCGTTTGGTTCAGAGACACTGCCAAATTCAGCTATGAGCTTATGAGAAGTGAGGCTTTTTGGTCGAGTAGCCCTAGTATGCAACATGTAGTTGAAGATACAAAGCGCATTTGTAGAGAAGAAAAGAGCTCAGAGACCAGGTGTTGCTGAATGCCATGAGCTGTTGAGCAGTGATGGCAGAGCTGGAGGTGGATCAATCCAACCTGCCCAGAGTCCAGGAGGTgtgccagtgttttgctgtactGGAGGATGGAGCTTTAGCTCATAATCTGCAAGAGCAGGAAATCGAGCAGTACTACAGCTCAAATGTGGAGAGGAGTCAGCTGGTGCAGAGGGACATCAGAGTAGCCAAGAGACTGCAGGATGAGGAGCAGCAGAGAGTGCAGACGCCACAGCATCAGACCACTCGTCAGCTGGAGGAACGGGATTCCGAATATGCACGCATGATTCAGGAGGAGATCCAGCGGTGTGCTGAGGAGGCTCGAAGGAGGGAAGTTGAGGACGAGgaaatCGCTAAAAGGATACAGGAAGAAGAACTTTGTTTGAGGCACAGGAGCAGTTACCAAAATAAAGATGTTAGAGGGCCTGCTTTTAGGAGTGGAACAACTGCTCTTGACTTGGTAGAACTGGAGCAGGTGTTAAGGGATGAGGAGCTGGCTCGCAGACTTCAGGAAGAGGAGGAGAGATTGGTCGCAGAGGCTCAGCATCTTTCCTCACCTCTCACCTCTAGAGATTGTCCGGTTGGAGACTTTAGAGCGGCACAGGTTGCTCAGGATGAGGAAATTGCACGTTTCATGCAGAAACAGGAGATAAAAGTTAAGCGGAGTTCCCGTGAGTTGGAATCTGCTGGGCAGGAATGCAGGGAGATTGAAAGAAGAGCAACATGTGACAGACAGAGGCGGAGACTGGATTCTGAAGGTCTTCGATCCCCGGTTGATGACTTCAGCCCAGACCATCCAGGTCAAATGTCTACACCAGTGCAAACACAAGCCATTAAGAATATCGCAGAAGAGCTTGACCCCACATTTCAAAGAAAAAACTCAGCCGATGATGGAAAAATCAATGGTCAAACTTCCCCACAGGCAGGCTCGTACAACCCATTGGATGAACCAACATTTGTTCCACCCACAAAACGACAGAGTGAAAAACTCGGACGAGTAAAGaccaaagagaaaaaagaaaatgtgaaaCAGAAAGAGAATTGCAAGCAGCAGTGATGCTGGACATGTGAAATGACCTGCATTAAATAAGTCATATATGCATGATATGCATGCTTGTCCCAACACTTGGGGATTTTCCAGTCTTCTGCTTTCACCAGTACTTGTTGGGATTCATTTGTAATAAACAAACTTGCAAAACAGGGGCACTCCAGATAATGCTGCTGTTACTAGCCAACATCTGTCATGCTGTATTTAGGTTTTCTGTTTCATTTTTGGTTTAGCAGCTGGCTAGAATGTCACCACAAAAGGGAAAGCTCCAATCTAACAGACAGTGCTGTTCAAAAAATGCATTCCTGTATGACTGGGAATATCAGAAATTATACTACGCTGAAGAAAAAGGAAGTTGACACACATTGTTGTCCAACATCCAAGCAGGCATTCTTTTACTATGGATTGTACTTTCCTCTTCTTGTATTCCAGGAACTACTTCAGCcttaaaaaaagtgttattttcgTTTTTGTGTGTTGCCTTCAAGAACACGTGTGTTAGCttcatgctttaaaatgtttactatTCTTAATATTATTACTGATAATATTTAGTAGTTTACAAGACCTGGAGTCTTGTTTCTCTTCTTCTGCCTCCTTTGTAGTGTACATCAGCATATTTTATATGCTTTACCAGGTTAGAGGAAATGAAACATTTTGTACTGATAAGTGCCATTTTTACACGTGTTTATTAGTGTCATTACATCAGTGTAAACAATGTGTTGTCAACAATCAGACCTTTAATGCttgtataaagtaaaaaaaaaatccttgtacAGAAgattaaaaaatctatataaatccA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-81 No description available

Ensembl:

ensembl_id ENSDART00000103480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045029 lncRNA downstream 2421 30009263 ~ 30010819 (-) True XLOC_022449
TCONS_00044275 lncRNA downstream 112005 29900651 ~ 29901235 (-) True XLOC_022448
TCONS_00044273 lncRNA downstream 168926 29841211 ~ 29844314 (-) True XLOC_022446
TCONS_00044741 lncRNA downstream 190675 29821201 ~ 29822565 (-) False XLOC_022443
TCONS_00044742 lncRNA downstream 190675 29821783 ~ 29822565 (-) True XLOC_022443
TCONS_00045030 lncRNA upstream 8701 30054434 ~ 30059126 (-) False XLOC_022451
TCONS_00045031 lncRNA upstream 8701 30054434 ~ 30059176 (-) True XLOC_022451
TCONS_00045032 lncRNA upstream 860691 30906424 ~ 30921011 (-) True XLOC_022458
TCONS_00044299 lncRNA upstream 1207567 31253300 ~ 31266621 (-) True XLOC_022461
TCONS_00044302 lncRNA upstream 1247819 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00044274 mRNA downstream 134597 29861243 ~ 29878643 (-) True XLOC_022447
TCONS_00044272 mRNA downstream 155153 29827134 ~ 29858087 (-) True XLOC_022445
TCONS_00044271 mRNA downstream 189094 29823286 ~ 29824146 (-) True XLOC_022444
TCONS_00044270 mRNA downstream 200573 29756603 ~ 29812667 (-) True XLOC_022442
TCONS_00044269 mRNA downstream 261510 29711569 ~ 29751730 (-) True XLOC_022441
TCONS_00044281 mRNA upstream 15631 30061364 ~ 30431333 (-) False XLOC_022452
TCONS_00044282 mRNA upstream 25261 30070994 ~ 30076950 (-) True XLOC_022452
TCONS_00044286 mRNA upstream 679983 30725716 ~ 30727596 (-) True XLOC_022455
TCONS_00044287 mRNA upstream 710071 30755804 ~ 30764319 (-) True XLOC_022456
TCONS_00044288 mRNA upstream 721577 30767310 ~ 30787932 (-) False XLOC_022457
TCONS_00044252 other downstream 636399 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044249 other downstream 755679 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044248 other downstream 755836 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044238 other downstream 1789997 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044236 other downstream 1790281 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044283 other upstream 471466 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other upstream 562250 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044285 other upstream 612909 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044303 other upstream 1293720 31339453 ~ 31345494 (-) True XLOC_022462
TCONS_00044322 other upstream 1595389 31641122 ~ 31648016 (-) False XLOC_022471

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_12064801_12077571.mRNA True 2139 mRNA 0.51 11 CI01000001 12064801 ~ 12077571 (-)