RNA id: TCONS_00044291


Basic Information

Item Value
RNA id TCONS_00044291
length 3195
RNA type mRNA
GC content 0.51
exon number 20
gene id XLOC_022457
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30767310 ~ 30787932 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCCAAGACGCAGATGATAAGCGGACAAGGACACGCTCAAAAGGAATCAGAGTTGTCACAATTATGTCACTCATATCTgtcaatgtaaaaacaaaatctaaaatatttttactaaagcttGTCATTCTTTCCAGTGCACTGGGCTGCCCGTTGGCCAAGAAAAGAAAACTCCAGGAAGCTGAAGAGAATCTGCCAGCCCCTAAAAAAAAGCCTAATCTCCTAAAGCTGGCCATGGATGATGGGTTCAATGCAGATAGTGACACAAACAGTGAAACCGAAACAAAAGATGAGGGAGTGGAGTCTGAAGAAGACACTGCTGATAAGGTGATGGAGGTGAAGGAAAAGTCACCTCAACATGGAAATTGCTTTTGTTTACGattgtcttcttttgtttttttcttagaaGAAAGTTCACAAGTGAACTTAGAAGAGAAAGAGACACCAATCAGACAAACAAGTCCAGTGCCAGAGATTGAAATTGAAAAGGAGGAGGCCAATATTGAGAGCACGCCCATCCAGCAAATCACCATGGATACCGAGGCAGAGGAGGAGCTACAGGTTGCTGAAGAGATTCAGGCAAGAGAGGAAGAGGTTGAGGAGGAAGCAGAAGAGATTACAGAAGAGGAGCGAGTGACCCAGCAGCTGAAAGAGACCGACGAGCCTGTGACAACAGttgaggaagaagaggaggacgATGAGGAAGATGAAGAGGGGGAGGAGGAAACACAATGTTTGAGCCAGAAGAACAACTCGGACCACCAGTACTTCAGCGGTGACTTTGGCAAAATGCAGACCAAAGAGACTGGGGAGCTGGAGAGGGACAaggaggaggaggaggagattgATGAAGCAGATGATGATGATTTAGACAGCATGTcacagaggtcagaggtcactgATGACTCGGAGACATACGACATGACACGAGGGAACCTGGGACTCCTGGAACAGGCCATTGCACTTAAAGCTGAACAAACCGGCCACAGTTCTGAAGAGAGCTACTCTCCTGAGCAGCAGCCCTACCACAGCTTAGACGACAGGACGAGTAAGGTCATGGACATCGCCGCTCGGAGAAAGAAGGAAGTAAAGTGCCCTACTCCAGGATGTGATGGCACAGGTCATGTGACTGGACTATATCCACACCACCGCAGCCTTTCTGGGTGCCCACACAAGGACAGAATCCCTCCAGAGATCTTGGCAATGCATGAGAACGTACTGAAGTGTCCCACACCTGGATGCACTGGGCAGGGACACGTGAACAGCAACCGCAATACACATCGCAGCCTCTCTGGATGTCCTATTGCTGCTGCAGGGAAACACAAAAGCCATGACAAGCAGTCTCAGCCGCAGACCTCTGTCATTGATCCTGCCTCTGTAGGCTCAAACTCTGACAGAGTTCTCAGgccAATGTGTTTTGTAAAGCAGCTGGAGATCCCTCAGTATGGTAGCTACAGGACAAATGCCATGCCGGCTACTCCTCGTGCCAACCTGGCCAAGGAGCTGGAGAAGTATTCCAAGGTGTCCTTTGACTATGCAAGCTTTGATGTACAGGTGTTTGGCAAGCGCATGCTTGCACCTAAGATGCCCACCAGCGAAACCTCACCTAAAGCCTTCAAATCAATATTAATTCCTAAAGCCCCATCCCCAAGCCACAGCCTGTCTGGAGGCTACACCAAAAGCAGCTCCTCTTCCACCTCAAGTGGGTACGACTACACCCATGATGCCGAAGCCGCACACATGGCTGCCACTGCCATCCTCAACCTGTCCACCCGCTGCTGGGAGAGACCCGAAAACCTCAGCACCAGACCACCAGATCAGGCCGGCAAAGACATGGACATTGAGGTGGATGAAAACGGTACACTGGACCTCAGCATGAAAAAACCCAAAAGGGAAGGAGTCAGGTCACCAGATCCATCCTCCTCCTCGTCATCGTCTTCTCAACACCATGGCGTCACCTCGCCTCACTCCAGCCACACCTACAAGCAAGAGGAGTGGGAGGGGCCTCTGGACTACACCAAGTCAAACCGACAGAAAGAGGAGGAGCCAGAGGAGGTGGAGTACACCACACACTCATACGCCTCCTCTGATGGAGAAGATGATGATGGCACTCAGGAGGGAGCAGAGGACAGGACGTACCCCGGTGAGGTCACAACCTCCAGCTATAAGGTCAAATTTCAGCCCAAGGACCTCAAAAAAGAGATCTTGCTATGTCCCACCCCAGGTTGTGATGGCAGTGGGCATATAACTGGGAACTATGCATCTCACCGAAGTCTCTCTGGTTGTCCCCTTGCTGATAAAAGTCTTCGGACCCTCATGGCTGCCCACACTGCTGAACTCAAATGCCCTACCCCAGGTTGTGATGGATCAGGACACATCACTGGAAACTATGCTTCCCATAGAAGTCTGTCTGGATGTCCACGTGCCAAGAAGGGAGGAATCAAAACCACCCCGACAAAGGATGACAAGGAAGACTCTGAGCTCATAAAGTGCCCGGTGCCAGGTTGTGACAGTCTGGGGCATATCAGTGGGAAATACGCCACCCACCGCAGTGCCTATGGGTGCCCGCTGGCAGCACGCCGGCAGAAAGAGGGCATGTTAAATGGCACACCATTCTCCTGGAAGGCCTTCAAGACTGAGGGCCCGACCTGCCCCACGCCGGGATGTGATGGATCAGGACATGCCAATGGCAGCTTCCTCACTCATCGCAGCCTGTCAGGTTGCCCTAGAGCTTCAGCTAACAAGAAGAGAGCCAGGTTCCCAGGAGATGACTACATCAGCAAGAAATTCAGGGCAAGTGATGtGCTAGACAATGATGAAGATATTAAACAGCTAAACAAAGAGATCAATGAACTGAATGAGTCGAACTCTGAGATGGAAGCAGACATGGCCAACCTCCACACACAGATCTCATCCATGGAGAAGAACCTCAAGAGCATGGAGGAGGAGAATAAGCTGATAGAGGAAAAGAATGAGGCTCTGTTCATGGAACTGTCAGGCCTGAGCCAGGCTCTCATCCGCAGCCTTGCCAACATCCGTCTACCACAGATGCAAGAGCCAATCACCGAGCAGAACTTTGACGCCTACGTGGACACGCTGACCCACATGTTTACTGATAAAGAGTGCTATCAAAACCCAGAAAACCGAGCTCTGCTGGAGTCCATCAACCAGGCCGTCAAAGGTATCGAGGTGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3885 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cranial skeletal system development. Predicted to be active in nucleus. Is expressed in brain; gonad; and midbrain hindbrain boundary neural rod. Orthologous to human MYT1 (myelin transcription factor 1).

Ensembl:

ensembl_id ENSDART00000180949

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045031 lncRNA downstream 708537 30054434 ~ 30059176 (-) True XLOC_022451
TCONS_00045030 lncRNA downstream 708587 30054434 ~ 30059126 (-) False XLOC_022451
TCONS_00045029 lncRNA downstream 756894 30009263 ~ 30010819 (-) True XLOC_022449
TCONS_00044275 lncRNA downstream 866478 29900651 ~ 29901235 (-) True XLOC_022448
TCONS_00044273 lncRNA downstream 923399 29841211 ~ 29844314 (-) True XLOC_022446
TCONS_00045032 lncRNA upstream 124549 30906424 ~ 30921011 (-) True XLOC_022458
TCONS_00044299 lncRNA upstream 471425 31253300 ~ 31266621 (-) True XLOC_022461
TCONS_00044302 lncRNA upstream 511677 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00045033 lncRNA upstream 620057 31401932 ~ 31403708 (-) True XLOC_022465
TCONS_00045034 lncRNA upstream 638936 31420811 ~ 31423522 (-) True XLOC_022466
TCONS_00044287 mRNA downstream 3394 30755804 ~ 30764319 (-) True XLOC_022456
TCONS_00044286 mRNA downstream 40117 30725716 ~ 30727596 (-) True XLOC_022455
TCONS_00044281 mRNA downstream 336380 30061364 ~ 30431333 (-) False XLOC_022452
TCONS_00044282 mRNA downstream 690763 30070994 ~ 30076950 (-) True XLOC_022452
TCONS_00044279 mRNA downstream 726648 30023168 ~ 30041065 (-) False XLOC_022450
TCONS_00044295 mRNA upstream 155882 30937757 ~ 30954738 (-) False XLOC_022459
TCONS_00044296 mRNA upstream 155882 30937757 ~ 30960506 (-) True XLOC_022459
TCONS_00044297 mRNA upstream 259183 31041058 ~ 31060350 (-) False XLOC_022460
TCONS_00044298 mRNA upstream 264510 31046385 ~ 31060350 (-) True XLOC_022460
TCONS_00044300 mRNA upstream 494287 31276162 ~ 31346319 (-) False XLOC_022462
TCONS_00044285 other downstream 69026 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044283 other downstream 69037 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other downstream 159612 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044280 other downstream 722060 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044252 other downstream 1390872 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044303 other upstream 557578 31339453 ~ 31345494 (-) True XLOC_022462
TCONS_00044322 other upstream 859247 31641122 ~ 31648016 (-) False XLOC_022471
TCONS_00044327 other upstream 911493 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044329 other upstream 972877 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044334 other upstream 1021207 31803082 ~ 31804360 (-) True XLOC_022475

Expression Profile

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