CI01000001_12633655_12648702


Basic Information

Item Value
gene id CI01000001_12633655_12648702
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12633198 ~ 12649116 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_12633655_12648702.mRNA
AAATAAAAATAACTGTGCATTCAATTAAATATTTAACAAATATGCAGGAGTGTCTGGGAAAATCCTATAATTTTACGCTAGTAAAGCAATGGTTTGGCACTACTGTAGCTGTTCGTAATCATGCCAGTAAAGCTGAGTTAACCCTGACTCAGACAGAGTGGGAGAAAAAGAGAGAGAGAGAGCAAAGCTCCTGTTTGTGGGGCGGAGATTTTAGAGTTTTTAAAGCACATGGCCACACACACAGTAGAGATATTCACTCAACCACTAGACTAACGGCTTTACTCGGATTTACCTTAACTTTACCTCATCTCACACAAACTCTTCAGTGGATTCTACTGGCATTATTCATCTCATTACTGCCTGGAAACATAAACATTCAGAATTGTCTTTATTTTTTTCACATAGGATAAGCAATGAAAGGTGAATAAGAGGAGATTCTCATCTTTGAACGCCGACAATGACAAAGACAAAAGTTGAGGCGAATCCTGAGTCTACTGCACGCTCATCCCATCATGGACGGGACGGGCAGGATAAAGCCTGTGGAGACGCGAGCAGCCACCAGCAGTCAAGACAAATCCACCGGCATCATGTGCAACACATGACGTCAAAACAACCTCAGGCGAACGCGTACTCTAAAATCACCCCAGCACCCTCACAGAACAAGACTAAGGAGATTCACTCCAAGAAACCAAAGCGTGGATTATCTGTCACGCCAAACATCTATGCTGGGAAAAAGGAGATGAAACCAGAGTCGAGAAAACGCTCCGAAAGCAATCGCAGTAAATCATCCGGGAGAAGAAAGCTATCGGATGGAAGCATCACGTCTGATGACCTGAGTAAGGACTCTGGCTGTGCTACGGGGAAACTGTCTTCCACGGACAGCAGCTCTGAGATCTCGGACGCATCTGAGGAGCAGAAGCAGTCCACTGATGCCCAGTGTGGTGAGGTCTGTCACGGAGGAACCGACGAAGAGATGATGGACGATTTAGCTGAGCAAATATCAGAACATAGAGAAGATGATGACCTGATCAATGCCACCCTGTCTCCGGGGTTTGGCTTCGGCGAGGGAAGCATCTCTCCTGGAGACCAGAGGTCCTACGTTTCCCTGGATAGTCGCTTGAACTTGAGCGCATCTGTGGCATTTTCGGATCTGACTGGAGACTTTACTGATGGGGTGCATGAGGATCTGCTGAGAGAGATTGACGACCTGAGATCGGAAAATGAATATTTAAAGGACGAAATGGAGGAGCTGCGCTCAGAGATGCTGGAGATGAGAGACATGTACATGGAGGAGGATGTATACCAGCTGCAGGAACTCCGACAGCAGCTGGAACAGGCCAATAAGGCCTGTCGCATCTTACAGTACCGACTCAGGAAAGCGGAGAGACGGAGCCTGCGCGTAGCCCAGACGGGACAGGTCGACGGGGAGCTTATCAGAACGCTTGAGCATGATATTAGGGTGGCAAAAAGCGTCTCCCTTCGCCTGCACAGCGAACTTGAGGTCATTCAAAAGAAAAATTCAAGGCTAGAATGGGAAAATGAGGAGCTGCGTGAACGGCTGCAGGATCTGGAGGTGGCGAAGCAAGTCCTGCAGGCTGAGATGGACAAATCACAGAATTCTCTGAAGAGAAGAAGTTTGAGATCAACATCAGGCAAGAGTGAAAAGAAACTCTCTCCACAGGATGACAGTGCTGATTTGAAATGCCAGCTCCACTTTGCCAAAGAGGAATCTGCACTCATGTGCAAGAAGCTAACAAAGATGGCCCTGGAAAGTGAGGCGATGCGGGAAGAGCTTGCCAAATACCGTCTGCTTTACGGTGAGGTGGATGAAAACCAGGCTGCAGCAGGCACGACTAATTCCGCCCATACCCGAGAAGCAGAGGTCAAAGTTCACTTGCGGCTGGTGGAAGAGGAAGCTACGCTGCTGAGTCGTCGAATAGTGGAGCTAGAGGTGGAGAACCGTGGCTTGCGGGCAGAGATGAGTGAACTGCGTGAACGAGGAGGAGGAAGCCTGGAAGAAGAGGAGATGGTGAAGGGGGCCGGTGAAGGGTTAGCAATGACTCTTCGCACTGGGGAGCAGGAGGAGGTTCTTGGAGGTGGATGTCTGGATGGTAAAGAGAAAGCAGATGCATTGACTATCCACAATAGTATGCAGGAGAACCAGATGCATGCAGAGGAAGAACATATGGAGAACTCTTCTATCCACATGCACAGAGAAGGGCCGATCGGTGGGGAACAGGAGCTTTTTGCAGAGACTAAAGAGGAAGATGGACAAGCTCAATGCAAGTCTGACTGCACATTTGGTGTGAAGGATCTAGAAGGTCTTCTTGCCATCCATGACCAGGCGTTGCTTGTCAGATCAACTATCCAGCTCCTGACAGCCCCAGCTAAAAATGGCCTATCACCTACATGTACCCATAAGACCACTCCTGGTGGCCCTTACCTAAGCAAAACGACAGTAGATCCTCAGTGCAAGACACATCAATGGCTTCTGGACCCCATGTTGAGTCCCTTGACCAATGGACTAGAAGTGTTACAAGCCCAGCTGCGTGCTCTTGTGGAAAAGTTGGAGGTGCTGTCAAGCTCCACTTCAGAGCGCACTGGGCCCGTTACAGAAAAGAATATATTACATTTTGGTGAAGATTTAAGTATAATGAAAGAGGATGCAACAAATCAAGAACGTCAATGTGAAGGAAGTAACCAGGACAGCTTAGTGCTGCTCACTCTGCAGCTCCGATGGTTCATCCAGCAGTGGCGGCAGGGAGAGAGACCCACCGGAGACGGAAAGAACCTGTTTGAGATTTATTGTCAGAATGAAATTCATCTCCTAAAGGATATAGAGTCAAGAGCATGCAAGAACAATCTTCAAGAGAAATGCGACACTCAGGTGAGCAATGCCCTGCTGACAGACCTGAGGACAGCACTGCAGGATCTGTTCTCTGAACTTTGGGAGCAGTACAGGGCAGCCCAGTTTGTCGTCCGGCAGTTTGCAAACGCCAAAGCAGCGTGGGCCGTGGAGTGTACAGAGCTCAAGAGCCTCATAAGCAGGCTGGAGGATCCAGCTGGGAAGGCAGGAATAAAGGGTCCATCAGACCTGAATGCGGCTTTGCAGAAGGACCACGTTGAGAAGCTTCAGCACCTGTTAGCCGAGTCCTACACTGCAGTCATGGACCTGACAAGACAGCTGAAGGTCCGTGAGAGCAACTGGAGCTCTGAGCGGCAGGAACTGCTAGAACACCTGAACCATGTGCGTCTAGAGTGTGAAAGGTCGAAGACAGCAAAGCAAAATAGAAAAATGCAGTCCCCCAGGAATAAGATCATGACCAAAGATGGAAAAATGGAAAGGATGACTCTCAAAACTGGCATAGCAAAACCCAACAAGAACTGGAAGTACCTCAGTCATGAAGCTGCCCTTCTGGACAGAGAAGATGCCTGTAAGACTTGGGACTGCCCTATCATGCCTTCCAGTTTCCCTGGTTTGAACCTAAACCAGGAGCTGACCCAGAGAAGCCACACTGCTCCAGAGAGGACCAGCATTCGTATATATTTCAGCCCACCATCAGCAAAAAGGATCCAGATGAGCTCTCTGGTAGCAGGAGAGGAGGAAGAGTGTGAGGAGAGCCAGGAACCACATTTCAGTGCCATTTCCTGTGGCCTTGTAAACCAAGACTGGGTCTCTGCATATGAAAACTGGCTAGGTAGCATGCCGATTGACCACCAAAATTTGACAGAGAGAAATTCAATAGCTGTCATCAGTTCTACATCCTGTTCAGGTCTTCAGACCTCCAGTATTGCGTCCCCTTCACGCTTGGCTTTCAATAGCTTGGACGTCTCAGCCAACTTGAGTGATGACATGAAGGAAATTACAGCAAGTGTGCTTCAAACCTCGCAGTCCAGCCCTCTAGAGAGGAAAAGAGGAAAGGAGTTTGGGAGCAATGTGGTGAGTGTTGTGAGTACAGGAACTCAAACTCAATCCCAACCACAGGTGACCACAATCGGGCTACAGACCGATGGCCCTCGATGTCTTTATGCTGCAAAGCACTGGTCACCCCGGGTGACTTCATTTGTCTCCGCAAGAACCCAGCAAACGCCGAGCTCAGTATCAACGCAGGTCAGCGATAAACCTGGCGGTCGTAAAACTGTAGGAGTCCACAAGTACGGTCTGGTCCAGGAGTTTCTGCGTAACGTGTGTGGTCGAGGAGAGAAAACCAACCCGGAGGTGGAGAAAGCGCCAGTGGCTCGTAGGGATCACATCGGTCTGGTGGGTTCAAAGAAATCTGAGCACCCCCCGTCTCGTATACCAGCGGTGCCACTGGTCAGAAATGACAGCATCACCAAAATCGTGAACCGCAGATTTATGAAACAAAGCCAAAAAGATGAAGGAGTGTGTCAGAGCCAGACCCAAACCCAGCGCCAAATCGACAGGGGTTCAATCAGCAGGAACAAAGGCTTGGAGGTTAGTAGCAAAGTTTAACTTATTCAAAAACTTGACAGTAAACTAAATAGAAAGCTTGGTGTTGAGGGAATGATATGTCAGGGCTCTAGACTGTGACTAAAATGGTCGCAAATGCAAAATGAAATTGTGCGTCAATCATTTAAAATCCAGTCACTTTGGAAAACATTGTGTGTATCCATATGAAGTTTTGTCATGAACAAATGATTCTTATGAACTGGCTCTTTTTAGTCAGCCTTAGTGATTTAGACTCGCTCAATTTTTTTTAATTTTTTTTTTATTTATACGTTTATTTAAATAGGGACAGTACAAAGAAGCATGATTCCAGTCAACACTGGAAAATACGTATTGTACATCGAGAGTATAGCATAAGCTAATTTGCATCTCGGGTCCCTAGAAAGGCTTTTTTAAAAAAAAAAAACTGCTAATCATAAA

Function

NR:

description
Hypothetical protein EH28_14867

GO:

id name namespace
GO:0016328 lateral plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_12633655_12648702.mRNA True 4888 mRNA 0.48 11 12633198 12649116

Neighbor

gene id symbol gene type direction distance location
CI01000001_12602382_12613489 CABLES2A coding upstream 19260 12601961 ~ 12613938 (+)
CI01000001_12580225_12599311 NA coding upstream 33611 12579974 ~ 12599587 (+)
CI01000001_12568625_12571184 NA coding upstream 61255 12568534 ~ 12571943 (+)
CI01000001_12556923_12557900 NPBWR2 coding upstream 75099 12556183 ~ 12558099 (+)
CI01000001_12503839_12514653 ASXL1 coding upstream 117870 12503528 ~ 12515328 (+)
CI01000001_12657571_12666609 NA coding downstream 8455 12657571 ~ 12667379 (+)
CI01000001_12718151_12726821 TBX18 coding downstream 68808 12717924 ~ 12727334 (+)
CI01000001_12814416_12815426 IRAK1BP1 coding downstream 165220 12814336 ~ 12815444 (+)
CI01000001_12873759_12874041 NA coding downstream 224643 12873448 ~ 12874215 (+)
CI01000001_12912442_12919516 SH3BGRL2 coding downstream 262498 12911614 ~ 12919991 (+)
G19718 NA non-coding upstream 55273 12577514 ~ 12577925 (+)
G19717 NA non-coding upstream 55779 12577205 ~ 12577419 (+)
G19704 NA non-coding upstream 77734 12555099 ~ 12555464 (+)
G19702 NA non-coding upstream 80740 12552027 ~ 12552458 (+)
G19697 NA non-coding upstream 86818 12545950 ~ 12546380 (+)
G19756 NA non-coding downstream 96874 12745990 ~ 12746308 (+)
G19783 NA non-coding downstream 150518 12799634 ~ 12810711 (+)
G19787 NA non-coding downstream 156185 12805301 ~ 12883428 (+)
G19792 NA non-coding downstream 172490 12821606 ~ 12826051 (+)
G19395 NA other upstream 951381 11681322 ~ 11681817 (+)
G19314 NA other upstream 1074525 11501194 ~ 11558673 (+)
G19039 NA other upstream 1779215 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2093352 10538388 ~ 10539846 (+)
G18937 NA other upstream 2156809 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 864288 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021781 si:ch211-197l9.2 coding NC_007134.7 CM002907.2 30967686 ~ 30981438 (+)