CI01000001_12657571_12666609


Basic Information

Item Value
gene id CI01000001_12657571_12666609
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12657571 ~ 12667379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_12657571_12666609.mRNA
TACAGTGCAGTGGACTCCAACCCCCTCTCTATCTACGTCATGCACCCTTTCTGGAACTCAGTGGTAAAGGTTTTGCCTACATGGATTGCCCCAAACCTCATCACGTTTACAGGGTTCATGTTCCTGGTACTAACCTTCACCATGCTGTCCTTCTTCGACTTTGACTTTTATGCCTCAGGGCAAGGCTATACACATGTGCCAAGTTGGGTGTGGATAGCTGCTGGTTTGTTCAACTTTCTGGCCTATACCTTAGATGGTGTGGATGGAAAACAGGCTCGCAGAACAAACTCCAGCACTCCACTGGGTGAACTATTTGACCACGGCCTGGACAGCTGGGCATGCGTGTTCTTCGTCGCTACAGTGTACTCTGTCTTTGGACGTGGTGATACGGGCGTCAGTGTGGTGACCCTGTATTATCTGTTATGGGTTGTCCTGTTTTCCTTCATACTGTCTCACTGGGAGAAGTACAACACTGGAATTCTGTTCCTGCCCTGGGGCTACGACATCAGTCAAGTGACTATCTCTATCGTGTACTTTATAACAGCGCTGGTTGGCGTGGAAACCTGGTACCAACCTGTTGTTTGGAATATTTATTACAGAGATTTCTTCACTGTTATGATTGTCAACATTGTCCAGCGGCAACCCAGAATCTTTTATCTCATGGTGGGAACAGCCTTCTCCAACGTTACTTGCAAGCTCATTGTATGCCAGATGAGCAATACACGATGCAAGCCATTGAGTTTATTGTTGTTGCCGATGACAGCTGTGGTGTTGCTAGTGATATCTGGGGCTGTGCAGCAAAGTGAAACGGTTATCCTTTACATATGGACCGCTGTAGTCCTCCTCACTCACATACACTATGGAGTATCAGTGGTGAAGCAGCTGAGCGATCATTTTAACATATATGCTTTCTCACTGAAGAAGCCCAATTCGGACTGACAGGACGAGGAGAAAATCGGCCTGAAGGCTGCTGAGGTCTAAGCTATCTCAGTATGCTCTTCAGCTAGCCGACTCTCACCAATCACCAAGGAGACACAGCTAACACCAGGAAACCAAATTGTACTGACCAAACGCGCCTTCTTATTCCGAGGATGCTGCTCAATCAACAAGAGGGTGGAGCTGCACCACAGGGCCCACTAATCCCTGAGGCAGAGCTGCACCATGGGGCTCATTGAGCCCTGAGGCAGAGCTGCACCACGGGGCCCACTGTGCCCAGGGGTGGAGCTGCACCATAGGACATATTGGGCTCAGACACACAATTACACAATGGGACTCAGTAGCTCAGAAATGCAGCTGTACAACAGGACCCACTGAGCCCAGGACCTACAGTGCCTCGACTTGCAGCAGTGTAACAGGGCCTATTCCTCGCAGAAAGAACTGTATTGTGTTGCTCGCTCTGAGCGGAAACAGTTTGGTTGTGTGGTATCCGTGAAGCTGGGGATTTCGCTTGTTTCCTAAGGAAATGTGCTTTTCAGCTGAGATACTAGGAGCCTTGAATGGTTAATCTCACTTATACGCTCTCTCTTTCAGATGAATCACACTCACTCCCAACACACTCCATCACATGTAGCAAACCACATGATGATGGACACACATAGGATGTGATGAATGTCTTTAGCTTATTCAATTTGAAGATTTTAATTGCATTTAATTTTGGCCTCAATTGCTTAATTTTGGGGGAAATGTCTTTTAAATTATTTTCAGTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_12657571_12666609.mRNA True 1709 mRNA 0.47 8 12657571 12667379

Neighbor

gene id symbol gene type direction distance location
CI01000001_12633655_12648702 NA coding upstream 8455 12633198 ~ 12649116 (+)
CI01000001_12602382_12613489 CABLES2A coding upstream 43633 12601961 ~ 12613938 (+)
CI01000001_12580225_12599311 NA coding upstream 57984 12579974 ~ 12599587 (+)
CI01000001_12568625_12571184 NA coding upstream 85628 12568534 ~ 12571943 (+)
CI01000001_12556923_12557900 NPBWR2 coding upstream 99472 12556183 ~ 12558099 (+)
CI01000001_12718151_12726821 TBX18 coding downstream 50545 12717924 ~ 12727334 (+)
CI01000001_12814416_12815426 IRAK1BP1 coding downstream 146957 12814336 ~ 12815444 (+)
CI01000001_12873759_12874041 NA coding downstream 206380 12873448 ~ 12874215 (+)
CI01000001_12912442_12919516 SH3BGRL2 coding downstream 244235 12911614 ~ 12919991 (+)
CI01000001_12926362_12928572 RPS12, RGD1561102, RPS12-PS2, RPS12P4, GM4925, RPS12.S coding downstream 258035 12925414 ~ 12928579 (+)
G19718 NA non-coding upstream 79646 12577514 ~ 12577925 (+)
G19717 NA non-coding upstream 80152 12577205 ~ 12577419 (+)
G19704 NA non-coding upstream 102107 12555099 ~ 12555464 (+)
G19702 NA non-coding upstream 105113 12552027 ~ 12552458 (+)
G19697 NA non-coding upstream 111191 12545950 ~ 12546380 (+)
G19756 NA non-coding downstream 78611 12745990 ~ 12746308 (+)
G19783 NA non-coding downstream 132255 12799634 ~ 12810711 (+)
G19787 NA non-coding downstream 137922 12805301 ~ 12883428 (+)
G19792 NA non-coding downstream 154227 12821606 ~ 12826051 (+)
G19395 NA other upstream 975754 11681322 ~ 11681817 (+)
G19314 NA other upstream 1098898 11501194 ~ 11558673 (+)
G19039 NA other upstream 1803588 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2117725 10538388 ~ 10539846 (+)
G18937 NA other upstream 2181182 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 846025 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021784 selenoi coding NC_007134.7 CM002907.2 31000243 ~ 31022418 (+)