CI01000001_12556923_12557900 (NPBWR2)


Basic Information

Item Value
gene id CI01000001_12556923_12557900
gene name NPBWR2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12556183 ~ 12558099 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_12556923_12557900.mRNA
CCATATATGTCTGAACAAAAATGACACACACAAACAGATTAAATTCACTTTAAACAAGCTGTTTTCCTTTTGACCACTTGTGTGTATTTATTTATTTGCTTATTTATAAATGCAAATTATTTTTATGTCATTTATATTCCTTTATATTTCTATTTTCATTTATTTTATTATACTAATTTGCTTATTAAGTTCTGACTGCCGTTTAACACATGCTCTTTTGACTCCCAAAGTATTGCATCAAGAACAATTCATTCTACAGCAGTAGTCATTTGTTTTAGACTAACTGCTTGATATATTCCACTTCGTGAAACGTATTGTGTTTCCTGCTGAACAACACAGAATGAAAATGAAATGTGAGGGACTGTTGGAGGGTCTGCCTTACATCACACGTGCACGCGTAAAATTGAGCGCGTAAAAGCGTTGCGCTCTGCCATTTACCACCAATAGAGCAGACCAGCAGAAGATCCTGCATGTGTGGATCTGTCAGGTACTAATCCTCAACATTTTAACTTGTATGTTGACTTCAATTTCTATTTCGTGAAATTATACATAAAATCTTGTGTTTTATGCACAACTTTATTTAAACTAAAAAGATAAACTAGTTAACAGATGCAAAATGCATATTTATGTACTAAGCAAACTGAAACAATTTCATACATTGCATGTAGTTTTTTCTTCTGTTATAAAGTGTTACTTTTTACTTTTTATAGGTTCTGATTTTGATAGAATTCAAAGACAAAATGGAGAATAAAACAATGGAAACTTTATGCAACCTGACCAGTCCGGATTATAACCAAACCAACTGCACTACTCCAACGTGGATGTTCTACCCCGACTTCTACATCTGGCTACCGGTTATTTACTCAGTCATCTGCGCCGTGGGACTCACGGGCAACACCGCTGTCATTTACGTGATTTTGAAGGCGCCTAAAATGAAAACCGTCACCAACTTATTCATTTTGAATTTGGCCATCGCCGACGACCTTTTCACGTTGGTGTTGCCCATCAATATCGCCGAGCACCTGTTAAACTACTGGCCGTTTGGAGAGATTTTATGCAAAGTGATCCTGTCCATAGACCACTACAACATCTTCTCCAGCATCTTCTTCTTGACTGTGATGAGTGTGGACCGCTATCTGGTCGTGGTGTCCACGTTGCGCTCCAAACGGATGCCCCACCGGACCTATAGGTTAGCCAAGACGGTCAGCCTGAGCGTTTGGGTTCTAGTCATTCTCATCGTGATGCCCTTCACCTTTTTCGCCGGTATTTACGTGAGTCCCGACGACGCGGAGAGCCGGAAGAGCTGCGTTTTGAGTTTCCCGAGCCCTGAGAGTTTCTGGTTCAAAGCCAGTCGGATCTACACGCTGGTCCTCGGGTTTGTCATCCCCGTATCGACCATTTGCATCCTCTATAGCGTGATGCTCTACAAGCTGAGACGCACGCGACTCAACTCCAACGGCAAGGCTCTGGATAAAGCCAAGAAGCGAGTCACAATGATGGTCTTCATCGTGCTTGCCGTTTGCTTGTTCTGTTGGACACCCTTCCACCTGAGTACAGTGGTCGCCCTCACCTCAGACTTGCCCACCACCCCGCTGGTTATAGGTATCTCTTATTTTATCACGGGACTGAGTTATGCCAACTCGTGTCTCAATCCGTTCCTTTACGCGTTCTTAGACGACAGTTTAAGAAAGGCGTTTAAGAAAATGCTGGAGTGCTGATTCCTCTTTTGTAAGCTCACAAATCCATCAATGAGGTCCAAGTACCCATAGTAACTGTGCTGTTTTAAATCAAAAGTCAAAACCCACTTTTTAAAAGTCACTTTAAAACAGTTAACTGGACTCATAAAGTAGCTTATCTTCTCACTGTAAAGTGTTTTCGTCATTGTCCAGTTTCAACATTATTTTACCTTATCAGTAA

Function

symbol description
npbwr2 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane.

NR:

description
neuropeptide B/W receptor 2, partial

GO: NA

KEGG:

id description
K08377 NPBWR2; neuropeptides B/W receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_12556923_12557900.mRNA True 1917 mRNA 0.41 1 12556183 12558099

Neighbor

gene id symbol gene type direction distance location
CI01000001_12503839_12514653 ASXL1 coding upstream 40855 12503528 ~ 12515328 (+)
CI01000001_12486765_12495297 DCJ11, DNAJC11A, DNAJC11 coding upstream 60665 12485546 ~ 12495518 (+)
CI01000001_12280407_12327837 NA coding upstream 228229 12278771 ~ 12327954 (+)
CI01000001_12088244_12091260 NA coding upstream 464689 12088167 ~ 12091494 (+)
CI01000001_12058281_12060612 NA coding upstream 494922 12057755 ~ 12061261 (+)
CI01000001_12568625_12571184 NA coding downstream 10435 12568534 ~ 12571943 (+)
CI01000001_12580225_12599311 NA coding downstream 21875 12579974 ~ 12599587 (+)
CI01000001_12602382_12613489 CABLES2A coding downstream 43862 12601961 ~ 12613938 (+)
CI01000001_12633655_12648702 NA coding downstream 75099 12633198 ~ 12649116 (+)
CI01000001_12657571_12666609 NA coding downstream 99472 12657571 ~ 12667379 (+)
G19704 NA non-coding upstream 719 12555099 ~ 12555464 (+)
G19702 NA non-coding upstream 3725 12552027 ~ 12552458 (+)
G19697 NA non-coding upstream 9803 12545950 ~ 12546380 (+)
G19673 NA non-coding upstream 17629 12522673 ~ 12538554 (+)
G19538 NA non-coding upstream 74778 12109563 ~ 12481405 (+)
G19717 NA non-coding downstream 19106 12577205 ~ 12577419 (+)
G19718 NA non-coding downstream 19415 12577514 ~ 12577925 (+)
G19756 NA non-coding downstream 187891 12745990 ~ 12746308 (+)
CI01000001_12873759_12874041 NA non-coding downstream 188393 12873448 ~ 12874215 (+)
G19783 NA non-coding downstream 241535 12799634 ~ 12810711 (+)
G19395 NA other upstream 874366 11681322 ~ 11681817 (+)
G19314 NA other upstream 997510 11501194 ~ 11558673 (+)
G19039 NA other upstream 1702200 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2016337 10538388 ~ 10539846 (+)
G18937 NA other upstream 2079794 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 955305 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location