LOC122326191


Basic Information

Item Value
gene id LOC122326191
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18954879 ~ 18972995 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU218343
aaagagCAGAGCTTTAAAGCCTTCGGTGTATTTGTTCTCTTCTCACACGTTCATCACGAGTTCGGATTAAACGCGTTCTTCTGTTGGTGAGGAGACTCGATCGACTCCAGAGATCATGATTTAATGCCGGGAGCCTGCAGACCCGTGAAGACCACCACAAGCTCCACAAAACCACTGGGACTTGTACGAGCTCTTCATCTGTTTGAGTAGATGAATATCTGGAGCTGCTCTCCTGTTCCTCACTTGTTTAATGTGTGTTCTCAGTTGCATTTGATGCACTTGATGCTTTCTAGCGGTTCTGTGATACGCTCTAATCAGGTCTAATGTTCACTCTTGcctgaacaaagaaaaataaactgcttTCCTCA
>XR_006247438.1
AGGAGTGAAAAGTACAGTGTTTGTCCTTTAAATGTAGTGAAGTTAAAGTCatacttaaaagaaaacttaaatGATAAGTAAATGTACTTTTCCACCTGTTACCAAGAAGTCTGAGACATATAGATCCGTTGCTAAGGTAACAAACAAGGGAAAAGAGACAAGAAACCATGGGAagcaaacacttcaaaataagagtctcTAAACcaagacagagaaacagagacggGTAGCACAGACAGTTTGGAGGTCATGGGCACTCCAGCCGGCGATCGTGgttattaaatctattttttaaatatagttctcatagtttattatttaaaaagctctGCATCACTCAAAAGTGCTGGAAATGAGCCCTGATTCAGATCTGGAGGAGCTTTTCCACttgtttcagtttaaaatgtttagactAAATTATAAAGCATGCCTTTCATCAGTCATATTCACTGCGTTTTCTTTACAAACACGTTTTAAGTCAAACAAGAGTCAACCGAGTCAACCGAGTTAACCGAGTCAACCGAGTTAACCGCACATGCTTGCAGTGAACAAAAAGAGATGTTAAGTTTATTGTATGTTTCAGTGGGATATAACTCAGTCTAAGCTTACACTGGGTACTAAACATCAAgccatgatgatgatgatgatgatgatgatgatgatgatgatggtggtggtatTTGTAACAGAGCTGTATGTgggttagatttttttctggatGTTTATGATCACAGTCTGATCACATCTGTGAAGACATCACTGAATTACTATAGTAATGCAATCATCAAAGAACTCAAACATGTGCAGAAAAGAGATGTCTGTGAGACCTCAGTCTATCAGTCTATTTCTTTACGGACTTATTTCAGACTTATTacttatatttctttctttcatgctCTGAAGAATAAACACCAGCATACAAGATCCTCAGGCAGGACAGATGAGTTCTAGAGAAGAAAGGTCACACTTCTGATGAATTCCTGCTTCAGCCTCCTTCACATCAGAgtaaagtgaaagtgaaagagCAGAGCTTTAAAGCCTTCGGTGTATTTGTTCTCTTCTCACACGTTCATCACGAGTTCGGATTAAACGCGTTCTTCTGTTGGTGAGGAGACTCGATCGACTCCAGAGATCATGATTTAATGCCGGGAGCCTGCAGACCCGTGAAGACCACCACAAGCTCCACAAAACCACTGGGACTTGTACGAGCTCTTCATCTGTTTGAGTAGATGAATATCTGGAGCTGCTCTCCTGTTCCTCACTTGTTTAATGTGTGTTCTCAGTTGCATTTGATGCACTTGATGCTTTCTAGCGGTTCTGTGATACGCTCTAATCAGGTCTAATGTTCACTCTTGcctgaacaaagaaaaataaactgcttTCCTCACTCAA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
TU218343 False 368 lncRNA 0.45 2 18954884 18971976
XR_006247438.1 True 1392 lncRNA 0.39 2 18954879 18972995

Neighbor

gene id symbol gene type direction distance location
LOC122326398 NA coding downstream 33598 18918501 ~ 18921281 (-)
LOC122326397 LOC107575763 coding downstream 36404 18751360 ~ 18918475 (-)
LOC122326420 pitx1,LOC107668456,LOC107692953,LOC107757861,LOC107713590 coding downstream 77375 18873364 ~ 18877504 (-)
LOC122326419 NA coding downstream 135337 18817782 ~ 18819542 (-)
sap30l sp30l,sap30l,LOC106603970,LOC105890504 coding downstream 219466 18730994 ~ 18735413 (-)
sar1b sar1b,LOC107603246,LOC107713617,LOC107657201,LOC107668454,LOC107757866 coding upstream 9995 18982990 ~ 18991517 (-)
G147765 NA non-coding downstream 49217 18837831 ~ 18905662 (-)
G147767 NA non-coding downstream 108469 18844996 ~ 18846410 (-)
G147741 ddx46,LOC107668438,LOC107713612,LOC107571605,LOC107757870 non-coding downstream 242829 18710652 ~ 18712050 (-)
G147718 larp1,LOC107757874,LOC107668436,LOC107571607,LOC107713603 non-coding downstream 349718 18604208 ~ 18605161 (-)
G147714 NA non-coding downstream 357482 18596085 ~ 18597397 (-)
G147756 LOC107757865,LOC107603244,LOC107668443,LOC107713615,LOC107657200,LOC107570434 non-coding upstream 1774 18974769 ~ 18975527 (-)
G147781 NA non-coding upstream 3693 18976688 ~ 18977162 (-)
G147782 NA non-coding upstream 6086 18979081 ~ 18979458 (-)
G147784 NA non-coding upstream 8079 18981074 ~ 18981562 (-)
G147785 NA non-coding upstream 8616 18981611 ~ 18982601 (-)
acsl6 acsl6,LOC107757868,LOC107668460,LOC107713587,LOC107657193,LOC107757859,LOC107657197,LOC107603236,LOC107570439,LOC107713593 other downstream 2997 18923748 ~ 18951882 (-)
G147749 galnt10,LOC107570436,LOC107668461,LOC107603248,LOC107657196 other downstream 50406 18736022 ~ 18904473 (-)
G147751 NA other downstream 209741 18743184 ~ 18745138 (-)
G147740 LOC107603250,LOC107668458,LOC107757873 other downstream 245277 18707704 ~ 18709602 (-)
G147728 NA other downstream 253817 18699622 ~ 18701062 (-)
G147810 NA other upstream 52527 19025522 ~ 19103650 (-)
G147791 LOC107738587 other upstream 74351 19047346 ~ 19128737 (-)

Expression


Co-expression Network