sap30l (sp30l,sap30l,LOC106603970,LOC105890504)


Basic Information

Item Value
gene id sap30l
gene name sp30l,sap30l,LOC106603970,LOC105890504
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18730994 ~ 18735413 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221738.1
AAAGCTCCAATTTCCGGTTTCTGGCAGGACATGTTTCATTGTACGTACCTTGTCGAGATGGGCTCGACTGTTGCTCGGTAGTTTGGAGTTTCTCCGTTTCTCCGGCGGAGTCGCGGGATCTTTAGCGAAGCATTGCGGAGATTCTGGTTCCGGACGCGTCGCTCGTTCGTGTGTTCGGAACGCCTCGAGTTCGGCCGCGAGCTGCTCCCTGAAGCGCCCGTCATGAACGGGTTCAGCACCGAGGAGGACAGCCACGACGCGCCGCCCGCGCCGCCCTTCTTCGGCCAGAGCTGCTGTCTGATCGAGGACGGGGAGCGGTGCGGCCGCGCGGCGGGGAACGCGTCCTTCAGCAAGCGCATCCAGAAGAGCATCAGCCAGAGGAAGCTGAAGCTGGACATCGACAAGAGCGTTCGTCATTTATACATCTGTGATTTCCACAAGAACTTCATCCAGAGCGTTCGTAACAAACGCAAGAGGAAGACCAGCGATGACGGAGGAGAGTCGCCCGATCACGATGTTGAAGTTCCAGAGgTGGATCTGTTCCAGCTGCAGGTGAACACACTGAGACGTTATAAGAGGCACTACAAGATCCAGACCAGACCGGGACTCAATAAAGCCCAGCTCGCTGAGACCGTGAGCCGTCATTTCCGCAATATTCCAGTGAACGAGAAGGAGACGCTCACGTACTTTATTTATATGGTGAAGAGCAGTAAGAGCCGGCTGGACCAGAAGTCAGACGGGAGCAAGCAGATTCCACCATGTACCCAGCCAGGACCTGATTGAAAGCACGAGCGAGACTGAAAGACTGCAGCTTTGCTCTCTCTGGTATCAAATGATCTGAAGCGTTTCACACTCGTTCTGAAGCTGAAGAACCGGAGAAGATTCTGTCTGAGGTTTTCTTTCCTCGTTTCTTTCGTGTTCGTCTGCTCTGTGACACAAACATGTCCCGCTTTTATATGACTGCTGTATATCTGCtctatatagcttttttttgtagattGTAATGTTagttttcttcctttctttggAATAATTTGTCTAAATACAGTTCTTGTGGCACTGCTCCTA
>XM_043221739.1
AGCTCCAATTTCCGGTTTCTGGCAGGACATGTTTCATTGTACGTACCTTGTCGAGATGGGCTCGACTGTTGCTCGGTAGTTTGGAGTTTCTCCGTTTCTCCGGCGGAGTCGCGGGATCTTTAGCGAAGCATTGCGGAGATTCTGGTTCCGGACGCGTCGCTCGTTCGTGTGTTCGGAACGCCTCGAGTTCGGCCGCGAGCTGCTCCCTGAAGCGCCCGTCATGAACGGGTTCAGCACCGAGGAGGACAGCCACGACGCGCCGCCCGCGCCGCCCTTCTTCGGCCAGAGCTGCTGTCTGATCGAGGACGGGGAGCGGTGCGGCCGCGCGGCGGGGAACGCGTCCTTCAGCAAGCGCATCCAGAAGAGCATCAGCCAGAGGAAGCTGAAGCTGGACATCGACAAGAGCGTTCGTCATTTATACATCTGTGATTTCCACAAGAACTTCATCCAGAGCGTTCGTAACAAACGCAAGAGGAAGACCAGCGATGACGGAGGAGAGTCGCCCGATCACGATGTTGAAGTTCCAGAGgTGGATCTGTTCCAGCTGCAGGTGAACACACTGAGACGTTATAAGAGGCACTACAAGATCCAGACCAGACCGGGACTCAATAAAGCCCAGCTCGCTGAGACCGTGAGCCGTCATTTCCGCAATATTCCAGTGAACGAGAAGGAGACGCTCACGTACTTTATTTATATGGTGAAGAGCAGTAAGAGCCGGCTGGACCAGAAGTCAGACGGGAGCAAGCAGGTGGAATGAGCGTCCTCTCCCGCCGGCGCTCTTTATTTATGACGTGCAGATGCTAGCTGGCTTTATGATTCCTCTCTGAATacttgctgtgtttttgtacaTACGGGAGTCACTACAGTCGCGCGCTTGTgtagtgatgatgatgatgatgatgatgatgatgatgatgatgtgccAAACCCACAGTAACACCAATAACCCCATGTTCAGATTCCACCATGTACCCAGCCAGGACCTGATTGAAAGCACGAGCGAGACTGAAAGACTGCAGCTTTGCTCTCTCTGGTATCAAATGATCTGAAGCGTTTCACACTCGTTCTGAAGCTGAAGAACCGGAGAAGATTCTGTCTGAGGTTTTCTTTCCTCGTTTCTTTCGTGTTCGTCTGCTCTGTGACACAAACATGTCCCGCTTTTATATGACTGCTGTATATCTGCtctatatagcttttttttgtagattGTAATGTTagttttcttcctttctttggAATAATTTGTCTAAATACAGTTCTTGTGGCACTGCTCCTA

Function

symbol description
sap30l Predicted to enable several functions, including non-sequence-specific DNA binding activity, bending; phosphatidylinositol phosphate binding activity; and zinc ion binding activity. Acts upstream of or within heart looping. Predicted to be located in nucleolus. Predicted to be part of histone deacetylase complex. Is expressed in several structures, including anterior neural rod; pectoral fin bud; pericardial region; pleuroperitoneal region; and trunk. Orthologous to several human genes including SAP30L (SAP30 like).

NR:

description
PREDICTED: histone deacetylase complex subunit SAP30L

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K19202 SAP30; histone deacetylase complex subunit SAP30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221738.1 False 1068 mRNA 0.52 5 18730994 18735413
XM_043221739.1 True 1276 mRNA 0.51 4 18730994 18735411

Neighbor

gene id symbol gene type direction distance location
LOC122326130 LOC107668457 coding downstream 25909 18702021 ~ 18705085 (-)
faxdc2 faxdc2,LOC107668437,LOC107713607,LOC107574044 coding downstream 107676 18617610 ~ 18623318 (-)
wdr55 wdr55 coding downstream 135289 18591539 ~ 18595705 (-)
cdc23 cdc23,LOC107692994,LOC100380698,LOC107668434 coding downstream 145553 18575504 ~ 18585441 (-)
si:dkey-71d15.2 LOC107757853,LOC107603213 coding downstream 166030 18560352 ~ 18564964 (-)
LOC122326397 LOC107575763 coding upstream 15947 18751360 ~ 18918475 (-)
LOC122326419 NA coding upstream 82369 18817782 ~ 18819542 (-)
LOC122326420 pitx1,LOC107668456,LOC107692953,LOC107757861,LOC107713590 coding upstream 137951 18873364 ~ 18877504 (-)
LOC122326398 NA coding upstream 183088 18918501 ~ 18921281 (-)
sar1b sar1b,LOC107603246,LOC107713617,LOC107657201,LOC107668454,LOC107757866 coding upstream 247577 18982990 ~ 18991517 (-)
G147741 ddx46,LOC107668438,LOC107713612,LOC107571605,LOC107757870 non-coding downstream 18944 18710652 ~ 18712050 (-)
G147718 larp1,LOC107757874,LOC107668436,LOC107571607,LOC107713603 non-coding downstream 125833 18604208 ~ 18605161 (-)
G147714 NA non-coding downstream 133597 18596085 ~ 18597397 (-)
G147671 NA non-coding downstream 322544 18331161 ~ 18408450 (-)
G147520 NA non-coding downstream 663051 18066280 ~ 18067943 (-)
G147765 NA non-coding upstream 102418 18837831 ~ 18905662 (-)
G147767 NA non-coding upstream 109583 18844996 ~ 18846410 (-)
LOC122326191 NA non-coding upstream 219466 18954879 ~ 18972995 (-)
G147756 LOC107757865,LOC107603244,LOC107668443,LOC107713615,LOC107657200,LOC107570434 non-coding upstream 239356 18974769 ~ 18975527 (-)
G147781 NA non-coding upstream 241275 18976688 ~ 18977162 (-)
G147740 LOC107603250,LOC107668458,LOC107757873 other downstream 21392 18707704 ~ 18709602 (-)
G147728 NA other downstream 29932 18699622 ~ 18701062 (-)
rbm11 LOC107572385 other downstream 177993 18549531 ~ 18553001 (-)
G147673 gabrg2,LOC107661671,LOC107692990,LOC107603256 other downstream 262143 18357568 ~ 18468851 (-)
G147531 NA other downstream 560410 18170080 ~ 18170584 (-)
G147749 galnt10,LOC107570436,LOC107668461,LOC107603248,LOC107657196 other upstream 609 18736022 ~ 18904473 (-)
G147751 NA other upstream 7771 18743184 ~ 18745138 (-)
acsl6 acsl6,LOC107757868,LOC107668460,LOC107713587,LOC107657193,LOC107757859,LOC107657197,LOC107603236,LOC107570439,LOC107713593 other upstream 188335 18923748 ~ 18951882 (-)
G147810 NA other upstream 290109 19025522 ~ 19103650 (-)
G147791 LOC107738587 other upstream 311933 19047346 ~ 19128737 (-)

Expression


Co-expression Network