rbm11 (LOC107572385)


Basic Information

Item Value
gene id rbm11
gene name LOC107572385
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18549531 ~ 18553001 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221406.1
GTGAAGTGAAGAGTGTTGAGGGCGGGATTCGAACTCGGGACGCTCTTCAGTGCCGCTGACTTTTTATTctgatttagatttaatttcaaGGTTTTTTTGGAGAAGTTGTTGTCAGTTTCACACTGGAGATTCATTAGAGCCTCAACAGAGAGCGAGGTTAACGAGCAGCACGAGACATCGGCTTCAACCTCGCCTCGGAAAATGTGTGACCGAGATCAAGACAAGACTGTCCTCGTAGGAAACATCCACAGCTGTGTGACGGAGGAGATTCTGTTCGAGCTGTTCCTGCAGGCAGGTCCGGTAGAAGAGGTGTGTATATTCCGAGAGGGTCAGTGTGgttgtgtttattataagcaCGCTGAGGCGGTCCCCTACGCTGTGGCTCTTCTCAATGGGATCTGGCTCTAcgggcagccaatcagattacaGCAGAGGACCGCGCTGTGTCCTTCAGTGCAGATGATGATGTACTTCTGAATGTAAATGACAGTCCAGCTGTGAAGAACTACTTCAGTGAAGCCTGCAGCTGGAGAGACATGGTGACATACCAGGAAATACagcatctctctcacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XR_006247482.1
TCTCGGATCATCAAAGCTCAGTAAACATCGGTCAGTGAGATTTACttgaaatttaaattgaatcaaGATGAATCACTCATGTTTTCACGACGCGTTCTTTGTACGCTTTCTGACCGGTTTATCTGTTCTTTGAGTTATATGTTGATATTAATATCCTTCTCATCCAGTGTTTCGATGTCATGAGACACAGCTGTCTTTGCCTTCTCAGAAAAGAACATGAAAATACTGAATGAGGAGGAAATGAGCAAATCAGGTGCATCTGTAACAGTTTAtgtttcagttttcattgttgactctttttggaattaaaatagaaaagttgcGTGCTTTTCATTGcctaaaaagaaacaaaagcaagTGTATTGTCACTCCAGGAAGATGATTATCAgtgtgcttttctttctttaaaacgGATACTAAAGTCCGTCTTAAACGCGGTGTTTGTTTCCCGCCCCCTGGCGTCCTCCCGCGGTACGGCACTGTCGCAATTCACGACTCATCACGACAAATAAAAGAGAGCGAGGTTAACGAGCAGCACGAGACATCGGCTTCAACCTCGCCTCGGAAAATGTGTGACCGAGATCAAGACAAGACTGTCCTCGTAGGAAACATCCACAGCTGTGTGACGGAGGAGATTCTGTTCGAGCTGTTCCTGCAGGCAGGTCCGGTAGAAGAGGTGTGTATATTCCGAGAGGGTCAGTGTGgttgtgtttattataagcaCGCTGAGGCGGTCCCCTACGCTGTGGCTCTTCTCAATGGGATCTGGCTCTAcgggcagccaatcagattacaGCAGAGGACCGCGCTGTGTCCTTCAGTGCAGATGATGATGTACTTCTGAATGTAAATGACAGTCCAGCTGTGAAGAACTACTTCAGTGAAGCCTGCAGCTGGAGAGACATGGCGTCCAGCAGAGGTCAGGTCAGGGGTCAGCGCGCTCTGGTCTCCCGTCTGTGACGTCCATCAGACAGTAAACACTGAGAAGCATGTCATCCGGCTCTGAGAGAGACTCTAATAAAACCTTCTGCATTCA

Function

NR:

description
splicing regulator RBM11-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221406.1 False 667 mRNA 0.49 4 18550358 18553001
XR_006247482.1 True 1036 transcript 0.46 4 18549531 18552744

Neighbor

gene id symbol gene type direction distance location
poglut3 kdelc2 coding downstream 14968 18497839 ~ 18534563 (-)
LOC122326768 LOC107661674,LOC107692986,LOC103038806,LOC108413784,LOC106567507,LOC105011225 coding downstream 216741 18263530 ~ 18332790 (-)
LOC122326376 LOC107603239,LOC107742469 coding downstream 449021 18090879 ~ 18100510 (-)
LOC122326718 LOC107742471,LOC107661810,LOC107580836 coding downstream 616874 17930402 ~ 17932657 (-)
LOC122326387 LOC107742460,LOC107603220,LOC107661762 coding downstream 837396 17711255 ~ 17712135 (-)
si:dkey-71d15.2 LOC107757853,LOC107603213 coding upstream 7351 18560352 ~ 18564964 (-)
cdc23 cdc23,LOC107692994,LOC100380698,LOC107668434 coding upstream 22503 18575504 ~ 18585441 (-)
wdr55 wdr55 coding upstream 38538 18591539 ~ 18595705 (-)
faxdc2 faxdc2,LOC107668437,LOC107713607,LOC107574044 coding upstream 64609 18617610 ~ 18623318 (-)
LOC122326130 LOC107668457 coding upstream 149020 18702021 ~ 18705085 (-)
G147671 NA non-coding downstream 141081 18331161 ~ 18408450 (-)
G147520 NA non-coding downstream 481588 18066280 ~ 18067943 (-)
G147468 NA non-coding downstream 516157 17554765 ~ 18033374 (-)
G147714 NA non-coding upstream 43084 18596085 ~ 18597397 (-)
G147718 larp1,LOC107757874,LOC107668436,LOC107571607,LOC107713603 non-coding upstream 51207 18604208 ~ 18605161 (-)
G147741 ddx46,LOC107668438,LOC107713612,LOC107571605,LOC107757870 non-coding upstream 157651 18710652 ~ 18712050 (-)
G147765 NA non-coding upstream 284830 18837831 ~ 18905662 (-)
G147767 NA non-coding upstream 291995 18844996 ~ 18846410 (-)
G147673 gabrg2,LOC107661671,LOC107692990,LOC107603256 other downstream 80680 18357568 ~ 18468851 (-)
G147531 NA other downstream 378947 18170080 ~ 18170584 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other downstream 421532 18126229 ~ 18127999 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other downstream 619370 17889232 ~ 17930161 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other downstream 1295159 17094588 ~ 17254372 (-)
G147728 NA other upstream 146621 18699622 ~ 18701062 (-)
G147740 LOC107603250,LOC107668458,LOC107757873 other upstream 154703 18707704 ~ 18709602 (-)
G147749 galnt10,LOC107570436,LOC107668461,LOC107603248,LOC107657196 other upstream 183021 18736022 ~ 18904473 (-)
G147751 NA other upstream 190183 18743184 ~ 18745138 (-)
acsl6 acsl6,LOC107757868,LOC107668460,LOC107713587,LOC107657193,LOC107757859,LOC107657197,LOC107603236,LOC107570439,LOC107713593 other upstream 370747 18923748 ~ 18951882 (-)

Expression


Co-expression Network