faxdc2 (faxdc2,LOC107668437,LOC107713607,LOC107574044)


Basic Information

Item Value
gene id faxdc2
gene name faxdc2,LOC107668437,LOC107713607,LOC107574044
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18617610 ~ 18623318 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221681.1
CGCGGCGGGCCAATCACAGAGCGGCTCGTGACGCCGTAAACAGCGGGGGCGCGCGCGTCGGCTGTCAGACGCTCGAGACGCACGTCATGGCCGGAAAGGAGAATACGGGAGGACTTTGGGATTCTCTGAAGAAAGCCACTTTTGTCATCGGATCCGGGCTTTTCTTTCTGGTCGGGTTTAGGAACTCGGTCACATGGCACCTGCAGAGGTTCTGGGGAGCGTCGGGGGATTTCTGGCAAACGCAGTGGACCAAACTTCACCAGGCGCTGGGAGGAAATGAGCCGGCCTTGTTTTTTATCGGGACCATGCTGGTGCCCACGCTGTCCTTCTGGTTGTTTAACGGCGTCCTGATGCTGGTGGACACCACGGGAAAGCCACACTTCATCACGCGCTACAGGATTCAGCCGGACAGGAACAACCCGGTGGATGCGGAGCGGTTACGGCACGCGGTCAAGACGGTGCTCTTCAATCAGGTGTGTCTGTCCGGCCCCGTGGTGGTGCTCACCTTCCTCCTGATGAAGTGGAGAGGAGACCCGTGCGGCCCGGAGCTGCCCACCTTCCACTGGGTCCTGCTGGAGCTGGCCGTCTGCGGGCTGCTGGAGGAGGTCCTCTTCTACTACACACACAGGCTGGTTCATCATCCCTCGCTCTATAAGAGCGTCCATAAGGTCCATCACGAGTGGACGGCTCCGGTCGGGGTGGTGGCGCTCTACGCTCATCCTCTGGAGCATGTGCTGTCTAACATGCTCCCGGCTCTGATGGGTCCGGTCCTGCTGGGATCACACGTGTCCACCACCAGCCTGTGGTTCACCGTCGCTCTGCTGGTCACTACGGTGTCTCACTGTGGATATCACCTGCCCCTGCTGCCCTCGCCCGAGTTCCACGACTTCCACCATCTCAAGTTTAATCAGTGTTACGGAGTGCTGGGAGTCCTGGACCGGCTTCACGGCACGGACGAGAAGTTCCGTAGCTCTAAAGCGTACGAGCGGCACACGGTCCTGCTGGGTCTGACGCCGCTGAGCGAGAGCATCCCTGACCATCCCAAGAAAGCCCAGGAATGAGCGGAAGAGAACCACAGCGAGCGTGAACACACTACGAGATCCTCGGAGCGGACGGATCCGGACTCTGGACCTACTGCTGAATCAGATTCGTCTCAGAACATTTATACAGAGATCAGTCGTTTTAATTCTTTGTTTTAACACTGAAATGTAGTCATGTTTTTATGGGAAGGAACACTGTACTCTTTCTGTCCCTGAtgattcttttattatttacattgtcAGTAATTCTAACGCACATCTCAAGATTCATTAAATAAGAGTTGAAGTAAaaagtgagtgtgtgaatgagtgcTTGTAGTGGAGGACAGAAGAGTTTCTGAGAGGCTGAATGAAAACTGAGGTGTTTCGAGATAACCGAACCGCTCTGCTTTCACTCGTCAACGTCCTTCACTTCATCACGAGAAGATCAGACTCAAGACAGTGCTTGAAGGAGGTCAAATAAAAGACGTCCTCTTTCTCAAGCAGCACAGTCTCGAGGGAAACTTCTGAAGAGTTTAATAGTTGATTTAAAGCCAGACTCAAACAGGAAAGTTcacatgtattcattttaaaacgttaTCTATTGATTCTACAGATATTttatgaactatatatatatttttcaatgaaatgctttaaaatgattgtaaaaCTAAAATTGCTTGTGCATAATggattaataaaatcaaaattaaagcaagtcaattttacaatta

Function

symbol description
faxdc2 Predicted to enable C-4 methylsterol oxidase activity. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within lipid biosynthetic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human FAXDC2 (fatty acid hydroxylase domain containing 2).

NR:

description
PREDICTED: fatty acid hydroxylase domain-containing protein 2

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K22282 FAXDC2; fatty acid hydroxylase domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221681.1 True 1756 mRNA 0.51 8 18617610 18623318

Neighbor

gene id symbol gene type direction distance location
wdr55 wdr55 coding downstream 21905 18591539 ~ 18595705 (-)
cdc23 cdc23,LOC107692994,LOC100380698,LOC107668434 coding downstream 32169 18575504 ~ 18585441 (-)
si:dkey-71d15.2 LOC107757853,LOC107603213 coding downstream 52646 18560352 ~ 18564964 (-)
tmprss15 tmprss15 coding downstream 67696 18534673 ~ 18549914 (-)
poglut3 kdelc2 coding downstream 83047 18497839 ~ 18534563 (-)
LOC122326130 LOC107668457 coding upstream 78703 18702021 ~ 18705085 (-)
sap30l sp30l,sap30l,LOC106603970,LOC105890504 coding upstream 107676 18730994 ~ 18735413 (-)
LOC122326397 LOC107575763 coding upstream 128042 18751360 ~ 18918475 (-)
LOC122326419 NA coding upstream 194464 18817782 ~ 18819542 (-)
LOC122326420 pitx1,LOC107668456,LOC107692953,LOC107757861,LOC107713590 coding upstream 250046 18873364 ~ 18877504 (-)
G147718 larp1,LOC107757874,LOC107668436,LOC107571607,LOC107713603 non-coding downstream 12449 18604208 ~ 18605161 (-)
G147714 NA non-coding downstream 20213 18596085 ~ 18597397 (-)
G147671 NA non-coding downstream 209160 18331161 ~ 18408450 (-)
G147520 NA non-coding downstream 549667 18066280 ~ 18067943 (-)
G147496 NA non-coding downstream 734596 17878662 ~ 17883014 (-)
G147741 ddx46,LOC107668438,LOC107713612,LOC107571605,LOC107757870 non-coding upstream 87334 18710652 ~ 18712050 (-)
G147765 NA non-coding upstream 214513 18837831 ~ 18905662 (-)
G147767 NA non-coding upstream 221678 18844996 ~ 18846410 (-)
LOC122326191 NA non-coding upstream 331561 18954879 ~ 18972995 (-)
G147756 LOC107757865,LOC107603244,LOC107668443,LOC107713615,LOC107657200,LOC107570434 non-coding upstream 351451 18974769 ~ 18975527 (-)
rbm11 LOC107572385 other downstream 64609 18549531 ~ 18553001 (-)
G147673 gabrg2,LOC107661671,LOC107692990,LOC107603256 other downstream 148759 18357568 ~ 18468851 (-)
G147531 NA other downstream 447026 18170080 ~ 18170584 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other downstream 489611 18126229 ~ 18127999 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other downstream 687449 17889232 ~ 17930161 (-)
G147728 NA other upstream 76304 18699622 ~ 18701062 (-)
G147740 LOC107603250,LOC107668458,LOC107757873 other upstream 84386 18707704 ~ 18709602 (-)
G147749 galnt10,LOC107570436,LOC107668461,LOC107603248,LOC107657196 other upstream 112704 18736022 ~ 18904473 (-)
G147751 NA other upstream 119866 18743184 ~ 18745138 (-)
acsl6 acsl6,LOC107757868,LOC107668460,LOC107713587,LOC107657193,LOC107757859,LOC107657197,LOC107603236,LOC107570439,LOC107713593 other upstream 300430 18923748 ~ 18951882 (-)

Expression


Co-expression Network