G147749 (galnt10,LOC107570436,LOC107668461,LOC107603248,LOC107657196)


Basic Information

Item Value
gene id G147749
gene name galnt10,LOC107570436,LOC107668461,LOC107603248,LOC107657196
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18736022 ~ 18904473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU218321
aacCTGAAGCGCGTGGCCGAGGTGTGGATGGACGAGTACGCCGAGTTCATCTACCAGCGACGGCCGGAGTACCGGCACCTGTCCGCCGGAGACGTGACGTCTCAGAAGGAGCTGAGGAGCAGACTGAGCTGCAGGAGCTTCCGCTGGTTCATGACCGAAGTGGCCTGGGATCTGCCCAAACACTACCCTCCTGTGGAGCCTCCGGCCGCCGCCTGGGGAGAGctgcgTAACGTGGGCTCCGGTCTCTGCATGGAGAGCAAGCACTTCTCCTCTGGTTCCCCGATCCGTCTGGAGAAGTGTCTGAAGGGACGAGGCGAGCCGACCTG
>TU218327
CCTCTATCACCCCATCAGTAACAGCTGTGTGGACTCAGACGCTGCTCAGAAGCGGATCTTCATGAACTCGTGTGATCCGTCGTCTCTCGGACAGCAGTGGATCTTCCAGAACACCAACGCCACGGTCCTGGACTCCTTCAACCACAGCGACTGAGCactcatcatcttcatcatcatcttcatcactcTCCAGACTGTGTGTCTGAGGACGATCTCAGAGATGATTCCCGTCACAGTCTGATGCCGTCTCTCATAAACACTGacggctttatttatttgcctgcTCCCTTCCACAGATTCATCAAGGAAACGGTTCTCATGAAACCTGATTTTATTACCCACCGTCTTTGTTGTtaacaaattagttttttctcattttaggacataatattttaatgcgaAGGCTGCAGGTTTGGGTTAAACCCCTTCAGAAGCTGTTCTGAGGAAGTCTTAGTCGATCTTGTTATATTCTCCTGGAAACCAGTGCAGTTGATCTAAGATTAAGATCCTTCCATCAGTCTCATGTAGTTTCTTCCCCATCATCTGGTTCTCAGTAACTGTTTGCACCCAAAGACGGCCGAACGATGTCCAGATCCTGACGCACACGAGCCTCGCGGTGAAGAGCTCGAATCCAGTCGACGTGCCTTGATAAAGTGTGAAGAACAGTCTAGTTTTCTACATTCAGAGTATGGCTGAGCGTTTTTACCACTGAAGTTTTTTACAGATTATCTGCTGAGCactttgaaatgtttctttgatCCGAAGCTGTTAAAGTTGGTCTGTTCAGAGCCTATTTTCaagtattaatgtttttgtaatatctgTCCGTTCTGAAGAGCAGAGGAGCTTCATAATGAATTATGGACATGTTTAATACTGGACTCGCTCTTGAACTGAAATGTTGGGTTTGTTATTGCCTTTATGAATTtccagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgcgtgtgtgtgtgatatgaaTGACAGCTAAAAGTCTTGGATTAATAAGGAGTCTGTTTTTTCACCGGTTCGTCAGTGCTGATGCATTAAAGTGGTTCTGTCACCATTTAAACTGCTCATCATTGATTATTAATAGTgcacaggaaaataaaaatctatccagctgttatttttcttttcagtttcattaataacattttgtctcatttcAAGGTGTGCTGTCATAGAgaaaacattaatgcatttcctCTTTTAGTACAAATATTGTTAAACTGTTGTGGTC
>TU218329
GTGTGTATTTGAATGAAAGCGTGTGatcctcctgtgtgtgtgtgtgtgtgtgtgtgttcagaacCTGAAGCGCGTGGCCGAGGTGTGGATGGACGAGTACGCCGAGTTCATCTACCAGCGACGGCCGGAGTACCGGCACCTGTCCGCCGGAGACGTGACGTCTCAGAAGGAGCTGAGGAGCAGACTGAGCTGCAGGAGCTTCCGCTGGTTCATGACCGAAGTGGCCTGGGATCTGCCCAAACACTACCCTCCTGTGGAGCCTCCGGCCGCCGCCTGGGGAGAGctgcgTAACGTGGGCTCCGGTCTCTGCATGGAGAGCAAGCACTTCTCCTCTGGTTCCCCGATCCGTCTGGAGAAGTGTCTGAAGGGACGAGGCGAGCCGACCTG
>TU218331
CCTCTATCACCCCATCAGTAACAGCTGTGTGGACTCAGACGCTGCTCAGAAGCGGATCTTCATGAACTCGTGTGATCCGTCGTCTCTCGGACAGCAGTGGATCTTCCAGAACACCAACGCCACGGTCCTGGACTCCTTCAACCACAGCGACTGAGCactcatcatcttcatcatcatcttcatcactcTCCAGACTGTGTGTCTGAGGACGATCTCAGAGATGATTCCCGTCACAGTCTGATGCCGTCTCTCATAAACACTGacggctttatttatttgcctgcTCCCTTCCACAGATTCATCAAGGAAACGGTTCTCATGAAACCTGATTTTATTACCCACCGTCTTTGTTGTtaacaaattagttttttctcattttaggacataatattttaatgcgaAGGCTGCAGGTTTGGGTTAAACCCCTTCAGAAGCTGTTCTGAGGAAGTCTTAGTCGATCTTGTTATATTCTCCTGGAAACCAGTGCAGTTGATCTAAGATTAAGATCCTTCCATCAGTCTCATGTAGTTTCTTCCCCATCATCTGGTTCTCAGTAACTGTTTGCACCCAAAGACGGCCGAACGATGTCCAGATCCTGACGCACACGAGCCTCGCGGTGAAGAGCTCGAATCCAGTCGACGTGCCTTGATAAAGTGTGAAGAACAGTCTAGTTTTCTACATTCAGAGTATGGCTGAGCGTTTTTACCACTGAAGTTTTTTACAGATTATCTGCTGAGCactttgaaatgtttctttgatCCGAAGCTGTTAAAGTTGGTCTGTTCAGAGCCTATTTTCaagtattaatgtttttgtaatatctgTCCGTTCTGAAGAGCAGAGGAGCTTCATAATGAATTATGGACATGTTTAATACTGGACTCGCTCTTGAACTGAAATGTTGGGTTTGTTATTGCCTTTATGAATTtccagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgcgtgtgtgtgtgatatgaaTGACAGCTAAAAGTCTTGGATTAATAAGGAGTCTGTTTTTTCACCGGTTCGTCAGTGCTGATGCATTAAAGTGGTTCTGTCACCATTTAAACTGCTCATCATTGATTATTAATAGTgcacaggaaaataaaaatctatccagctgttatttttcttttcagtttcattaataacattttgtctcatttcAAGGTGTGCTGTCATAGAgaaaacattaatgcatttcctCTTTTAGTACAAATATTGTTAAACTGTTGTGGTC

Function

symbol description
galnt10 Predicted to be active in Golgi apparatus. Orthologous to human GALNT10 (polypeptide N-acetylgalactosaminyltransferase 10).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218321 False 326 TUCP 0.63 2 18903531 18904412
TU218327 False 1253 lncRNA 0.42 2 18736022 18902037
TU218329 False 387 TUCP 0.61 2 18903531 18904473
TU218331 True 1257 lncRNA 0.42 2 18736022 18902037

Neighbor

gene id symbol gene type direction distance location
sap30l sp30l,sap30l,LOC106603970,LOC105890504 coding downstream 609 18730994 ~ 18735413 (-)
LOC122326130 LOC107668457 coding downstream 30937 18702021 ~ 18705085 (-)
faxdc2 faxdc2,LOC107668437,LOC107713607,LOC107574044 coding downstream 112704 18617610 ~ 18623318 (-)
wdr55 wdr55 coding downstream 140317 18591539 ~ 18595705 (-)
cdc23 cdc23,LOC107692994,LOC100380698,LOC107668434 coding downstream 150581 18575504 ~ 18585441 (-)
LOC122326398 NA coding upstream 14028 18918501 ~ 18921281 (-)
sar1b sar1b,LOC107603246,LOC107713617,LOC107657201,LOC107668454,LOC107757866 coding upstream 78517 18982990 ~ 18991517 (-)
G147741 ddx46,LOC107668438,LOC107713612,LOC107571605,LOC107757870 non-coding downstream 23972 18710652 ~ 18712050 (-)
G147718 larp1,LOC107757874,LOC107668436,LOC107571607,LOC107713603 non-coding downstream 130861 18604208 ~ 18605161 (-)
G147714 NA non-coding downstream 138625 18596085 ~ 18597397 (-)
G147671 NA non-coding downstream 327572 18331161 ~ 18408450 (-)
G147520 NA non-coding downstream 668079 18066280 ~ 18067943 (-)
LOC122326191 NA non-coding upstream 50406 18954879 ~ 18972995 (-)
G147756 LOC107757865,LOC107603244,LOC107668443,LOC107713615,LOC107657200,LOC107570434 non-coding upstream 70296 18974769 ~ 18975527 (-)
G147781 NA non-coding upstream 72215 18976688 ~ 18977162 (-)
G147782 NA non-coding upstream 74608 18979081 ~ 18979458 (-)
G147784 NA non-coding upstream 76601 18981074 ~ 18981562 (-)
G147740 LOC107603250,LOC107668458,LOC107757873 other downstream 26420 18707704 ~ 18709602 (-)
G147728 NA other downstream 34960 18699622 ~ 18701062 (-)
rbm11 LOC107572385 other downstream 183021 18549531 ~ 18553001 (-)
G147673 gabrg2,LOC107661671,LOC107692990,LOC107603256 other downstream 267171 18357568 ~ 18468851 (-)
G147531 NA other downstream 565438 18170080 ~ 18170584 (-)
acsl6 acsl6,LOC107757868,LOC107668460,LOC107713587,LOC107657193,LOC107757859,LOC107657197,LOC107603236,LOC107570439,LOC107713593 other upstream 19275 18923748 ~ 18951882 (-)
G147810 NA other upstream 121049 19025522 ~ 19103650 (-)
G147791 LOC107738587 other upstream 142873 19047346 ~ 19128737 (-)

Expression


Co-expression Network