RNA id: TU218327


Basic Information

Item Value
RNA id TU218327
length 1253
lncRNA type read_through
GC content 0.42
exon number 2
gene id G147749
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18736022 ~ 18904473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCTATCACCCCATCAGTAACAGCTGTGTGGACTCAGACGCTGCTCAGAAGCGGATCTTCATGAACTCGTGTGATCCGTCGTCTCTCGGACAGCAGTGGATCTTCCAGAACACCAACGCCACGGTCCTGGACTCCTTCAACCACAGCGACTGAGCactcatcatcttcatcatcatcttcatcactcTCCAGACTGTGTGTCTGAGGACGATCTCAGAGATGATTCCCGTCACAGTCTGATGCCGTCTCTCATAAACACTGacggctttatttatttgcctgcTCCCTTCCACAGATTCATCAAGGAAACGGTTCTCATGAAACCTGATTTTATTACCCACCGTCTTTGTTGTtaacaaattagttttttctcattttaggacataatattttaatgcgaAGGCTGCAGGTTTGGGTTAAACCCCTTCAGAAGCTGTTCTGAGGAAGTCTTAGTCGATCTTGTTATATTCTCCTGGAAACCAGTGCAGTTGATCTAAGATTAAGATCCTTCCATCAGTCTCATGTAGTTTCTTCCCCATCATCTGGTTCTCAGTAACTGTTTGCACCCAAAGACGGCCGAACGATGTCCAGATCCTGACGCACACGAGCCTCGCGGTGAAGAGCTCGAATCCAGTCGACGTGCCTTGATAAAGTGTGAAGAACAGTCTAGTTTTCTACATTCAGAGTATGGCTGAGCGTTTTTACCACTGAAGTTTTTTACAGATTATCTGCTGAGCactttgaaatgtttctttgatCCGAAGCTGTTAAAGTTGGTCTGTTCAGAGCCTATTTTCaagtattaatgtttttgtaatatctgTCCGTTCTGAAGAGCAGAGGAGCTTCATAATGAATTATGGACATGTTTAATACTGGACTCGCTCTTGAACTGAAATGTTGGGTTTGTTATTGCCTTTATGAATTtccagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgcgtgtgtgtgtgatatgaaTGACAGCTAAAAGTCTTGGATTAATAAGGAGTCTGTTTTTTCACCGGTTCGTCAGTGCTGATGCATTAAAGTGGTTCTGTCACCATTTAAACTGCTCATCATTGATTATTAATAGTgcacaggaaaataaaaatctatccagctgttatttttcttttcagtttcattaataacattttgtctcatttcAAGGTGTGCTGTCATAGAgaaaacattaatgcatttcctCTTTTAGTACAAATATTGTTAAACTGTTGTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218310 lncRNA downstream 23972 18710652 ~ 18712050 (-) True G147741
TU218278 lncRNA downstream 130861 18604208 ~ 18605161 (-) True G147718
TU218274 lncRNA downstream 138625 18596085 ~ 18597397 (-) True G147714
TU218215 lncRNA downstream 267171 18381187 ~ 18468851 (-) False G147673
TU218206 lncRNA downstream 352128 18381187 ~ 18383894 (-) False G147673
TU218339 lncRNA upstream 21786 18923823 ~ 18951882 (-) False acsl6
XR_006247438.1 lncRNA upstream 52842 18954879 ~ 18972995 (-) True LOC122326191
TU218343 lncRNA upstream 52847 18954884 ~ 18971976 (-) False LOC122326191
TU218344 lncRNA upstream 72732 18974769 ~ 18975527 (-) True G147756
TU218386 lncRNA upstream 74651 18976688 ~ 18977162 (-) True G147781
XM_043221738.1 mRNA downstream 609 18730994 ~ 18735413 (-) False sap30l
XM_043221739.1 mRNA downstream 611 18730994 ~ 18735411 (-) True sap30l
XM_043220815.1 mRNA downstream 30937 18702021 ~ 18705085 (-) True LOC122326130
XM_043221681.1 mRNA downstream 112704 18617610 ~ 18623318 (-) True faxdc2
XM_043221940.1 mRNA downstream 140317 18591539 ~ 18595705 (-) True wdr55
XM_043221253.1 mRNA upstream 16464 18918501 ~ 18921281 (-) True LOC122326398
XM_043221743.1 mRNA upstream 21711 18923748 ~ 18945799 (-) True acsl6
XM_043220913.1 mRNA upstream 80953 18982990 ~ 18991517 (-) True sar1b
TU218309 other downstream 26420 18707704 ~ 18709602 (-) True G147740
TU218295 other downstream 34960 18699622 ~ 18701062 (-) True G147728
XR_006247482.1 other downstream 183278 18549531 ~ 18552744 (-) True rbm11
TU218205 other downstream 267171 18458374 ~ 18468851 (-) True G147673
TU217960 other downstream 565438 18170080 ~ 18170584 (-) True G147531
TU218321 other upstream 1494 18903531 ~ 18904412 (-) False G147749
TU218329 other upstream 1494 18903531 ~ 18904473 (-) False G147749
TU218428 other upstream 123485 19025522 ~ 19103650 (-) True G147810
TU218399 other upstream 145309 19047346 ~ 19128737 (-) True G147791

Expression Profile