RNA id: XM_043221738.1


Basic Information

Item Value
RNA id XM_043221738.1
length 1068
RNA type mRNA
GC content 0.52
exon number 5
gene id sap30l
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18730994 ~ 18735413 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGCTCCAATTTCCGGTTTCTGGCAGGACATGTTTCATTGTACGTACCTTGTCGAGATGGGCTCGACTGTTGCTCGGTAGTTTGGAGTTTCTCCGTTTCTCCGGCGGAGTCGCGGGATCTTTAGCGAAGCATTGCGGAGATTCTGGTTCCGGACGCGTCGCTCGTTCGTGTGTTCGGAACGCCTCGAGTTCGGCCGCGAGCTGCTCCCTGAAGCGCCCGTCATGAACGGGTTCAGCACCGAGGAGGACAGCCACGACGCGCCGCCCGCGCCGCCCTTCTTCGGCCAGAGCTGCTGTCTGATCGAGGACGGGGAGCGGTGCGGCCGCGCGGCGGGGAACGCGTCCTTCAGCAAGCGCATCCAGAAGAGCATCAGCCAGAGGAAGCTGAAGCTGGACATCGACAAGAGCGTTCGTCATTTATACATCTGTGATTTCCACAAGAACTTCATCCAGAGCGTTCGTAACAAACGCAAGAGGAAGACCAGCGATGACGGAGGAGAGTCGCCCGATCACGATGTTGAAGTTCCAGAGgTGGATCTGTTCCAGCTGCAGGTGAACACACTGAGACGTTATAAGAGGCACTACAAGATCCAGACCAGACCGGGACTCAATAAAGCCCAGCTCGCTGAGACCGTGAGCCGTCATTTCCGCAATATTCCAGTGAACGAGAAGGAGACGCTCACGTACTTTATTTATATGGTGAAGAGCAGTAAGAGCCGGCTGGACCAGAAGTCAGACGGGAGCAAGCAGATTCCACCATGTACCCAGCCAGGACCTGATTGAAAGCACGAGCGAGACTGAAAGACTGCAGCTTTGCTCTCTCTGGTATCAAATGATCTGAAGCGTTTCACACTCGTTCTGAAGCTGAAGAACCGGAGAAGATTCTGTCTGAGGTTTTCTTTCCTCGTTTCTTTCGTGTTCGTCTGCTCTGTGACACAAACATGTCCCGCTTTTATATGACTGCTGTATATCTGCtctatatagcttttttttgtagattGTAATGTTagttttcttcctttctttggAATAATTTGTCTAAATACAGTTCTTGTGGCACTGCTCCTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218310 lncRNA downstream 18944 18710652 ~ 18712050 (-) True G147741
TU218278 lncRNA downstream 125833 18604208 ~ 18605161 (-) True G147718
TU218274 lncRNA downstream 133597 18596085 ~ 18597397 (-) True G147714
TU218215 lncRNA downstream 262143 18381187 ~ 18468851 (-) False G147673
TU218206 lncRNA downstream 347100 18381187 ~ 18383894 (-) False G147673
TU218327 lncRNA upstream 609 18736022 ~ 18902037 (-) False G147749
TU218331 lncRNA upstream 609 18736022 ~ 18902037 (-) True G147749
TU218363 lncRNA upstream 102418 18837831 ~ 18905662 (-) True G147765
TU218366 lncRNA upstream 109583 18844996 ~ 18846410 (-) True G147767
TU218339 lncRNA upstream 188410 18923823 ~ 18951882 (-) False acsl6
XM_043220815.1 mRNA downstream 25909 18702021 ~ 18705085 (-) True LOC122326130
XM_043221681.1 mRNA downstream 107676 18617610 ~ 18623318 (-) True faxdc2
XM_043221940.1 mRNA downstream 135289 18591539 ~ 18595705 (-) True wdr55
XM_043221396.1 mRNA downstream 145553 18575504 ~ 18585441 (-) True cdc23
XM_043221403.1 mRNA downstream 166030 18560353 ~ 18564964 (-) True si:dkey-71d15.2
XM_043221252.1 mRNA upstream 15947 18751360 ~ 18918475 (-) True LOC122326397
XM_043221284.1 mRNA upstream 82369 18817782 ~ 18819542 (-) True LOC122326419
XM_043221286.1 mRNA upstream 137951 18873364 ~ 18877504 (-) False LOC122326420
XM_043221285.1 mRNA upstream 137954 18873367 ~ 18877503 (-) True LOC122326420
XM_043221253.1 mRNA upstream 183088 18918501 ~ 18921281 (-) True LOC122326398
TU218309 other downstream 21392 18707704 ~ 18709602 (-) True G147740
TU218295 other downstream 29932 18699622 ~ 18701062 (-) True G147728
XR_006247482.1 other downstream 178250 18549531 ~ 18552744 (-) True rbm11
TU218205 other downstream 262143 18458374 ~ 18468851 (-) True G147673
TU217960 other downstream 560410 18170080 ~ 18170584 (-) True G147531
TU218335 other upstream 7771 18743184 ~ 18745138 (-) True G147751
TU218321 other upstream 168118 18903531 ~ 18904412 (-) False G147749
TU218329 other upstream 168118 18903531 ~ 18904473 (-) False G147749
TU218428 other upstream 290109 19025522 ~ 19103650 (-) True G147810
TU218399 other upstream 311933 19047346 ~ 19128737 (-) True G147791

Expression Profile