LOC122326420 (pitx1,LOC107668456,LOC107692953,LOC107757861,LOC107713590)


Basic Information

Item Value
gene id LOC122326420
gene name pitx1,LOC107668456,LOC107692953,LOC107757861,LOC107713590
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18873364 ~ 18877504 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221285.1
taaaaacataaagctTCGGATTCtttgtttctaaaataaaaatacgttatatttttatatttgtatatatttatatattttttaatacgAAAAGTGCGGGATTAATTGTGTGATTAATATCTGAGTCTGAGTCTGTCTTAAACACATAGAAAGGTCGTTGTTTCTCTTCATCCAGCAGCAGACACTGAGCCGAAGAACCCGGATCAGAACCTCACAcaataaacttatttatttttattacatgaaaaaTTCTATTTCTCATTGTTAGACATTTTACGTTATGTTTCCAAACAGCAGCTTCAGCCGAAAGTGCTCTGTTTTAGTAAAAGGTGTTCAGAGGAGGCTCAGGGAGAAGAACCACCtccaccttcttcttcttcttcttcttcttcatttaATTACGAGCTTAATCTTCATTAGAAGCAGTTCTGCGCGCGTCTGAGAAAacgaattgttttttttgtttctctgacTCTCACAGAAACTCGACTGAAGGTTGTTGAAGGAAAGCTCGAGGAAGAAGAGCCTGTGGGAgggactgagagagagagagagagagagacacagagagagagactgctgCACCTCCGCTCTCTTCAGGAACAGATCGAGTCTGAACGACGATATCGTGAGAGACCGCCGGCTTCTTTAGAGAAGAAGAGCCTGATCAGAAGAGACTCCAGCGCTGGGAGAGCTCCTGGGACACGCATGATTGTTCTAAAGCTGGAATGAATCTGGACATGGCCTCATCTTTTCATCTGCCGAGGAGCAGCAGCACCAGAGAAACACTGGAGAACTCGAGCAGCGACTCCTCAGACAATGAGACAGCAGAAAAGGAGAGGTCTGTGGAGCAGAGAAGCGACGACGGAAACGCCGACGAGtccaagaaaaagaaacaaagacgACAGAGGACTCACTTCACGAGCCAGCAGCTTCAGGAGCTCGAGGCGACCTTCCAGAGGAACCGCTACCCGGACATGAGCACCAGAGAGGAGATCGCCGTCTGGACCAACCTCACCGAGGCCCGCGTCCGGGTCTGGTTCAAGAACCGAAGGGCGAAGTGGAGAAAGAGGGAGCGGAACCAGCAGATGGACCTGTGCAAGAACAGCTACCTTCCTCAGTTCAGCGGCCTGATGCAGCCCTACGAGGACGTGTACCCCGCCTACACCTACAACAACTGGACCAACAAGGGCCTGGCCCCGGCCCCGCTGTCCACCAAGAACTTCACCTTCTTCAACTCCATGAGTCCCCTCACGTCCCAGTCCGTGTTCTCGGCCCCGACCTCCATCTCCTCCATGAGTATGGCGTCCGGGATGGGTCACTCGGCCGTGCCGGGCATGCCGACCGCCGGCCTGAACAACATCGGTAACCTGAACGGAATCGGGAGCTCGGCGATCAACCCGGCGATGAGCTCGTCGACGTGTCCCTACGGGCCCCCCGGGTCCCCTTACAGCGTCTACAGGGACACTTGCAACTCCTTAAGACTGAAGTCCAAGCAGCACCCGTCTTTTGGATATAGCGCCCTGCAGAGCCCCGGGTCGAGTCTAAACGCGTGTCAGTACAACAGCTGACGAATTAAACCGGAGCCCCGGAGAAACGACAGCCGTGCTGGATTCGGTGCGACCGGCATTTGTTTGTGGAATATGCGGATCGTCTGCGTTTCCCTAAACCTGCACAGCGATTTCAATCCATTACTTGGATTCCAACGTTTTGAAGACAACTTAAACTCATACattgtacataaatataaacgTGGAGCGAGAGTCGGCGGCGACGCGGCGCGGGAAGGGCGCTCTGTCGGAGCGCGGCGTGTCGTGTCGTGTCGTGTCGCGTGATTCGGGTCGTGTTCGTGCGTCGCGTTCTCTTGTATTCAGTGTCGCGGAGCTTCTCGTCCCTTCTTTCCTTGTGTCCATAGATTTAACGCATGCTTACTTCGAGTGAAAAACgtgttttgtaaaaacaaaaatatatgaatgtgtagACTAAATAACAAAGCTATAACTTTATGTTGTACCCCTGTTGATTGAACTTGTGCTTGTTTCTGATCATGTTTGAATAAACCTCGAAAGAAAGAATTCCTAAGGACTGGATAAATCGGCGcgggctgaaaaaaaaacaaactcgtTTCTAGTTTACACGAGCAGCAAGACGTCTTTCGATCATATCCGACGGGTTTCTTCCCTGTTCGTCGAGATTCATTTCAATGCttgctttttctctttccatAAATTTCACTTGACATCGACGTGTGTCTAAACGCGCCCTCAATCCTTCCGTTCTTAACGTTTCTTCGTTATAAACGATCCCCAAAGCACGCAATTACACCCAAATACACCTTTAggataaaagacagaaaagcaaACTTTAAAATCTCTCTCTTATCACATGAAGTGTCTGTTTTATCTGCACGGGTGTGATCCCGAAGAGAAGGCTGAGGTTTTTCATCCGTTCCTCTGATAAAAACGCCTTTGGTTTCCTGGAAGgtcgtgagagagagagagagccgtgGACTAAGAGACCGAGTCAAACACATCCCCGAAGAGAACACGACACGGCCCGCGA
>XM_043221286.1
ataaaaacataaagctTCGGATTCtttgtttctaaaataaaaatacgttatatttttatatttgtatatatttatatattttttaatacgAAAAGTGCGGGATTAATTGTGTGATTAATATCTGAGTCTGAGTCTGTCTTAAACACATAGAAAGGTCGTTGTTTCTCTTCATCCAGCAGCAGACACTGAGCCGAAGAACCCGGATCAGAACCTCACAcaataaacttatttatttttattacatgaaaaaTTCTATTTCTCATTGTTAGACATTTTACGTTATGTTTCCAAACAGCAGCTTCAGCCGAAAGTGCTCTGTTTTAGTAAAAGGTGTTCAGAGGAGGCTCAGGGAGAAGAACCACCtccaccttcttcttcttcttcttcttcttcatttaATTACGAGCTTAATCTTCATTAGAAGCAGTTCTGCGCGCGTCTGAGAAAacgaattgttttttttgtttctctgacTCTCACAGAAACTCGACTGAAGGTTGTTGAAGGAAAGCTCGAGGAAGAAGAGCCTGTGGGAgggactgagagagagagagagagagagacacagagagagagactgctgCACCTCCGCTCTCTTCAGGAACAGATCGAGTCTGAACGACGATATCGTGAGAGACCGCCGGCTTCTTTAGAGAAGAAGAGCCTGATCAGAAGAGACTCCAGCGCTGGGAGAGCTCCTGGGACACGCATGATTGTTCTAAAGCTGGAATGAATCTGGACATGGCCTCATCTTTTCATCTGCCGAGGAGCAGCAGCACCAGAGAAACACTGGAGAACTCGAGCAGCGACTCCTCAGACAATGAGACAGCAGGAGAGGTCTGTGGAGCAGAGAAGCGACGACGGAAACGCCGACGAGtccaagaaaaagaaacaaagacgACAGAGGACTCACTTCACGAGCCAGCAGCTTCAGGAGCTCGAGGCGACCTTCCAGAGGAACCGCTACCCGGACATGAGCACCAGAGAGGAGATCGCCGTCTGGACCAACCTCACCGAGGCCCGCGTCCGGGTCTGGTTCAAGAACCGAAGGGCGAAGTGGAGAAAGAGGGAGCGGAACCAGCAGATGGACCTGTGCAAGAACAGCTACCTTCCTCAGTTCAGCGGCCTGATGCAGCCCTACGAGGACGTGTACCCCGCCTACACCTACAACAACTGGACCAACAAGGGCCTGGCCCCGGCCCCGCTGTCCACCAAGAACTTCACCTTCTTCAACTCCATGAGTCCCCTCACGTCCCAGTCCGTGTTCTCGGCCCCGACCTCCATCTCCTCCATGAGTATGGCGTCCGGGATGGGTCACTCGGCCGTGCCGGGCATGCCGACCGCCGGCCTGAACAACATCGGTAACCTGAACGGAATCGGGAGCTCGGCGATCAACCCGGCGATGAGCTCGTCGACGTGTCCCTACGGGCCCCCCGGGTCCCCTTACAGCGTCTACAGGGACACTTGCAACTCCTTAAGACTGAAGTCCAAGCAGCACCCGTCTTTTGGATATAGCGCCCTGCAGAGCCCCGGGTCGAGTCTAAACGCGTGTCAGTACAACAGCTGACGAATTAAACCGGAGCCCCGGAGAAACGACAGCCGTGCTGGATTCGGTGCGACCGGCATTTGTTTGTGGAATATGCGGATCGTCTGCGTTTCCCTAAACCTGCACAGCGATTTCAATCCATTACTTGGATTCCAACGTTTTGAAGACAACTTAAACTCATACattgtacataaatataaacgTGGAGCGAGAGTCGGCGGCGACGCGGCGCGGGAAGGGCGCTCTGTCGGAGCGCGGCGTGTCGTGTCGTGTCGTGTCGCGTGATTCGGGTCGTGTTCGTGCGTCGCGTTCTCTTGTATTCAGTGTCGCGGAGCTTCTCGTCCCTTCTTTCCTTGTGTCCATAGATTTAACGCATGCTTACTTCGAGTGAAAAACgtgttttgtaaaaacaaaaatatatgaatgtgtagACTAAATAACAAAGCTATAACTTTATGTTGTACCCCTGTTGATTGAACTTGTGCTTGTTTCTGATCATGTTTGAATAAACCTCGAAAGAAAGAATTCCTAAGGACTGGATAAATCGGCGcgggctgaaaaaaaaacaaactcgtTTCTAGTTTACACGAGCAGCAAGACGTCTTTCGATCATATCCGACGGGTTTCTTCCCTGTTCGTCGAGATTCATTTCAATGCttgctttttctctttccatAAATTTCACTTGACATCGACGTGTGTCTAAACGCGCCCTCAATCCTTCCGTTCTTAACGTTTCTTCGTTATAAACGATCCCCAAAGCACGCAATTACACCCAAATACACCTTTAggataaaagacagaaaagcaaACTTTAAAATCTCTCTCTTATCACATGAAGTGTCTGTTTTATCTGCACGGGTGTGATCCCGAAGAGAAGGCTGAGGTTTTTCATCCGTTCCTCTGATAAAAACGCCTTTGGTTTCCTGGAAGgtcgtgagagagagagagagccgtgGACTAAGAGACCGAGTCAAACACATCCCCGAAGAGAACACGACACGGCCCGCGAGAA

Function

symbol description
pitx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including adenohypophyseal placode; head; immature eye; non neural ectoderm; and pelvic fin bud. Human ortholog(s) of this gene implicated in clubfoot. Orthologous to human PITX1 (paired like homeodomain 1).

NR:

description
PREDICTED: pituitary homeobox 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09356 PITX1; paired-like homeodomain transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221285.1 True 2562 mRNA 0.49 3 18873367 18877503
XM_043221286.1 False 2561 mRNA 0.49 3 18873364 18877504

Neighbor

gene id symbol gene type direction distance location
LOC122326419 NA coding downstream 53822 18817782 ~ 18819542 (-)
sap30l sp30l,sap30l,LOC106603970,LOC105890504 coding downstream 137951 18730994 ~ 18735413 (-)
LOC122326130 LOC107668457 coding downstream 168279 18702021 ~ 18705085 (-)
faxdc2 faxdc2,LOC107668437,LOC107713607,LOC107574044 coding downstream 250046 18617610 ~ 18623318 (-)
wdr55 wdr55 coding downstream 277659 18591539 ~ 18595705 (-)
LOC122326398 NA coding upstream 40997 18918501 ~ 18921281 (-)
sar1b sar1b,LOC107603246,LOC107713617,LOC107657201,LOC107668454,LOC107757866 coding upstream 105486 18982990 ~ 18991517 (-)
G147767 NA non-coding downstream 26954 18844996 ~ 18846410 (-)
G147741 ddx46,LOC107668438,LOC107713612,LOC107571605,LOC107757870 non-coding downstream 161314 18710652 ~ 18712050 (-)
G147718 larp1,LOC107757874,LOC107668436,LOC107571607,LOC107713603 non-coding downstream 268203 18604208 ~ 18605161 (-)
G147714 NA non-coding downstream 275967 18596085 ~ 18597397 (-)
G147671 NA non-coding downstream 464914 18331161 ~ 18408450 (-)
LOC122326191 NA non-coding upstream 77375 18954879 ~ 18972995 (-)
G147756 LOC107757865,LOC107603244,LOC107668443,LOC107713615,LOC107657200,LOC107570434 non-coding upstream 97265 18974769 ~ 18975527 (-)
G147781 NA non-coding upstream 99184 18976688 ~ 18977162 (-)
G147782 NA non-coding upstream 101577 18979081 ~ 18979458 (-)
G147784 NA non-coding upstream 103570 18981074 ~ 18981562 (-)
G147751 NA other downstream 128226 18743184 ~ 18745138 (-)
G147740 LOC107603250,LOC107668458,LOC107757873 other downstream 163762 18707704 ~ 18709602 (-)
G147728 NA other downstream 172302 18699622 ~ 18701062 (-)
rbm11 LOC107572385 other downstream 320363 18549531 ~ 18553001 (-)
G147673 gabrg2,LOC107661671,LOC107692990,LOC107603256 other downstream 404513 18357568 ~ 18468851 (-)
acsl6 acsl6,LOC107757868,LOC107668460,LOC107713587,LOC107657193,LOC107757859,LOC107657197,LOC107603236,LOC107570439,LOC107713593 other upstream 46244 18923748 ~ 18951882 (-)
G147810 NA other upstream 148018 19025522 ~ 19103650 (-)
G147791 LOC107738587 other upstream 169842 19047346 ~ 19128737 (-)

Expression


Co-expression Network