RNA id: XM_043221286.1


Basic Information

Item Value
RNA id XM_043221286.1
length 2561
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC122326420
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18873364 ~ 18877504 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataaaaacataaagctTCGGATTCtttgtttctaaaataaaaatacgttatatttttatatttgtatatatttatatattttttaatacgAAAAGTGCGGGATTAATTGTGTGATTAATATCTGAGTCTGAGTCTGTCTTAAACACATAGAAAGGTCGTTGTTTCTCTTCATCCAGCAGCAGACACTGAGCCGAAGAACCCGGATCAGAACCTCACAcaataaacttatttatttttattacatgaaaaaTTCTATTTCTCATTGTTAGACATTTTACGTTATGTTTCCAAACAGCAGCTTCAGCCGAAAGTGCTCTGTTTTAGTAAAAGGTGTTCAGAGGAGGCTCAGGGAGAAGAACCACCtccaccttcttcttcttcttcttcttcttcatttaATTACGAGCTTAATCTTCATTAGAAGCAGTTCTGCGCGCGTCTGAGAAAacgaattgttttttttgtttctctgacTCTCACAGAAACTCGACTGAAGGTTGTTGAAGGAAAGCTCGAGGAAGAAGAGCCTGTGGGAgggactgagagagagagagagagagagacacagagagagagactgctgCACCTCCGCTCTCTTCAGGAACAGATCGAGTCTGAACGACGATATCGTGAGAGACCGCCGGCTTCTTTAGAGAAGAAGAGCCTGATCAGAAGAGACTCCAGCGCTGGGAGAGCTCCTGGGACACGCATGATTGTTCTAAAGCTGGAATGAATCTGGACATGGCCTCATCTTTTCATCTGCCGAGGAGCAGCAGCACCAGAGAAACACTGGAGAACTCGAGCAGCGACTCCTCAGACAATGAGACAGCAGGAGAGGTCTGTGGAGCAGAGAAGCGACGACGGAAACGCCGACGAGtccaagaaaaagaaacaaagacgACAGAGGACTCACTTCACGAGCCAGCAGCTTCAGGAGCTCGAGGCGACCTTCCAGAGGAACCGCTACCCGGACATGAGCACCAGAGAGGAGATCGCCGTCTGGACCAACCTCACCGAGGCCCGCGTCCGGGTCTGGTTCAAGAACCGAAGGGCGAAGTGGAGAAAGAGGGAGCGGAACCAGCAGATGGACCTGTGCAAGAACAGCTACCTTCCTCAGTTCAGCGGCCTGATGCAGCCCTACGAGGACGTGTACCCCGCCTACACCTACAACAACTGGACCAACAAGGGCCTGGCCCCGGCCCCGCTGTCCACCAAGAACTTCACCTTCTTCAACTCCATGAGTCCCCTCACGTCCCAGTCCGTGTTCTCGGCCCCGACCTCCATCTCCTCCATGAGTATGGCGTCCGGGATGGGTCACTCGGCCGTGCCGGGCATGCCGACCGCCGGCCTGAACAACATCGGTAACCTGAACGGAATCGGGAGCTCGGCGATCAACCCGGCGATGAGCTCGTCGACGTGTCCCTACGGGCCCCCCGGGTCCCCTTACAGCGTCTACAGGGACACTTGCAACTCCTTAAGACTGAAGTCCAAGCAGCACCCGTCTTTTGGATATAGCGCCCTGCAGAGCCCCGGGTCGAGTCTAAACGCGTGTCAGTACAACAGCTGACGAATTAAACCGGAGCCCCGGAGAAACGACAGCCGTGCTGGATTCGGTGCGACCGGCATTTGTTTGTGGAATATGCGGATCGTCTGCGTTTCCCTAAACCTGCACAGCGATTTCAATCCATTACTTGGATTCCAACGTTTTGAAGACAACTTAAACTCATACattgtacataaatataaacgTGGAGCGAGAGTCGGCGGCGACGCGGCGCGGGAAGGGCGCTCTGTCGGAGCGCGGCGTGTCGTGTCGTGTCGTGTCGCGTGATTCGGGTCGTGTTCGTGCGTCGCGTTCTCTTGTATTCAGTGTCGCGGAGCTTCTCGTCCCTTCTTTCCTTGTGTCCATAGATTTAACGCATGCTTACTTCGAGTGAAAAACgtgttttgtaaaaacaaaaatatatgaatgtgtagACTAAATAACAAAGCTATAACTTTATGTTGTACCCCTGTTGATTGAACTTGTGCTTGTTTCTGATCATGTTTGAATAAACCTCGAAAGAAAGAATTCCTAAGGACTGGATAAATCGGCGcgggctgaaaaaaaaacaaactcgtTTCTAGTTTACACGAGCAGCAAGACGTCTTTCGATCATATCCGACGGGTTTCTTCCCTGTTCGTCGAGATTCATTTCAATGCttgctttttctctttccatAAATTTCACTTGACATCGACGTGTGTCTAAACGCGCCCTCAATCCTTCCGTTCTTAACGTTTCTTCGTTATAAACGATCCCCAAAGCACGCAATTACACCCAAATACACCTTTAggataaaagacagaaaagcaaACTTTAAAATCTCTCTCTTATCACATGAAGTGTCTGTTTTATCTGCACGGGTGTGATCCCGAAGAGAAGGCTGAGGTTTTTCATCCGTTCCTCTGATAAAAACGCCTTTGGTTTCCTGGAAGgtcgtgagagagagagagagccgtgGACTAAGAGACCGAGTCAAACACATCCCCGAAGAGAACACGACACGGCCCGCGAGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218366 lncRNA downstream 26954 18844996 ~ 18846410 (-) True G147767
TU218310 lncRNA downstream 161314 18710652 ~ 18712050 (-) True G147741
TU218278 lncRNA downstream 268203 18604208 ~ 18605161 (-) True G147718
TU218274 lncRNA downstream 275967 18596085 ~ 18597397 (-) True G147714
TU218215 lncRNA downstream 404513 18381187 ~ 18468851 (-) False G147673
TU218339 lncRNA upstream 46319 18923823 ~ 18951882 (-) False acsl6
XR_006247438.1 lncRNA upstream 77375 18954879 ~ 18972995 (-) True LOC122326191
TU218343 lncRNA upstream 77380 18954884 ~ 18971976 (-) False LOC122326191
TU218344 lncRNA upstream 97265 18974769 ~ 18975527 (-) True G147756
TU218386 lncRNA upstream 99184 18976688 ~ 18977162 (-) True G147781
XM_043221284.1 mRNA downstream 53822 18817782 ~ 18819542 (-) True LOC122326419
XM_043221738.1 mRNA downstream 137951 18730994 ~ 18735413 (-) False sap30l
XM_043221739.1 mRNA downstream 137953 18730994 ~ 18735411 (-) True sap30l
XM_043220815.1 mRNA downstream 168279 18702021 ~ 18705085 (-) True LOC122326130
XM_043221681.1 mRNA downstream 250046 18617610 ~ 18623318 (-) True faxdc2
XM_043221253.1 mRNA upstream 40997 18918501 ~ 18921281 (-) True LOC122326398
XM_043221743.1 mRNA upstream 46244 18923748 ~ 18945799 (-) True acsl6
XM_043220913.1 mRNA upstream 105486 18982990 ~ 18991517 (-) True sar1b
TU218335 other downstream 128226 18743184 ~ 18745138 (-) True G147751
TU218309 other downstream 163762 18707704 ~ 18709602 (-) True G147740
TU218295 other downstream 172302 18699622 ~ 18701062 (-) True G147728
XR_006247482.1 other downstream 320620 18549531 ~ 18552744 (-) True rbm11
TU218205 other downstream 404513 18458374 ~ 18468851 (-) True G147673
TU218321 other upstream 26027 18903531 ~ 18904412 (-) False G147749
TU218329 other upstream 26027 18903531 ~ 18904473 (-) False G147749
TU218428 other upstream 148018 19025522 ~ 19103650 (-) True G147810
TU218399 other upstream 169842 19047346 ~ 19128737 (-) True G147791

Expression Profile