LOC122326376 (LOC107603239,LOC107742469)


Basic Information

Item Value
gene id LOC122326376
gene name LOC107603239,LOC107742469
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18090879 ~ 18100510 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221233.1
CGCACAGGTTGCTCGTGATTTCGCTTTAGCATGGAAGCATGAAAACTGTCTTTAGGgcatatatcatttttttaggaGGCacctaaaaagaaagaaattcatctCATTCATTTttgccttttcatttttttcctcttcggTTTTTCCTCCAAGAAAATGACCAATTTAAGCATGGATTATTTCAATTCGTCTCCTTCAGCTCGAAGCAGTGTTCACAATTACGTTGAAGACACTGATAATTCTTTACAAGAAAGtcggGGAATGAAGGGAGAGGTTCACAACCATTTAGAGGAGAGTATTCGTCCGTACATCGATCTGATTGATACTCTGCGCTCAGTTGGCATTCAGAAGGACTTGGCGTTGCCGACTATCGTAGTGATCGGAGACCAGAGTTCTGGGAAAAGCTCTGTGTTGGAAGCACTGTCTGGAATTGCGTTGCCAAGAGGAAGTGGAATTGTCACTAGATGTCCACTAGAGCTGAGGCTGAGGAACGTAACAAGTGGAGTCAGCTGGAAAGCTGTTCTGTCTTACCGTaagaagaaatatgaaaaaaacactaaagcaGTTTCTAACCAACTGATGAGCTCCGCGAGCAAAAGGCCACGTATGTCTCACGAGGAGCAGGTCACTGAATTCGAGGATCCTTCATTAGTTGAAAAACACGTTGAAGAAGCCCAGAACGAGTTGGCTGGAAAAGGGGTGAAAATCTGTGATGACCTCATCACTTTAGAGATCAGGTCAGCTGATGTCTGTGACCTTACCCTGATCGATCTACCTGGAATCGCCCGGGTCCCAGTGCAAGGACAACCACAGGATATTGGAAAACAGATCAAACGTCTGATCCTGAAATTTATTGAGAAGCAAGAGACTATCAACATGGTAGTGGTCCCCTGTAACGCAGACATTGCAACAACCGAAGCATTGAAAATGGCACAAGAAGTGGATCCTGATGGCATGAGAACTCTTGCCATTCTGACCAAGCCAGACCTCATAGACAGGGGAACCGAGAAGAACATTCTGGCCGTTGTCCAGAACAAAGTGATTCCTCTCCGCAAAGGTTACGTCATGGTGAAGTGTAGAGGACAACAACAGATCGATGACAAAGTTCCTCTGGTGGAGGCCACAGAAACTGAAAGAGATTTTTTCCAAAATCATGACTTTTTCAGACCGCTCTTGGATAACAATAAAGCAACTATTAAATGTCTCGCTGTCAAACTCACTCAGGATCTCGTTAGTCATATTAAAAAATCCCTGCCAAAGCTTGACGAGCAGATTAAAAAGCAGTTGTGGGAAGTGAAGAATGCGATGAAGGAGTGTGAAGCTGGACCTCCACAGGACCAAGGAGCCAAACTATTCCTCATTAAAATATTAACAAAATTCAACGATAAAATCAAGTCCTTATCATTGGGAGAGCTGTTCAATAAGGAAAATATGTTTGTCCAGTTTCGGGCTGAATTCAAGAAGTGGAATGAAGGTCTTAATGAAACAAAGACATCCTTTGAAAGTTCGAATGAGCTTAACCAGAATTACAGAGGAAGGGAACTGCCCGGCTTCAGCAACTACAGAATCTTCGAGATGATTTTGCAGAACCGTGTGGATAAACTCAAAGAGCCAGCCAACAACGAATTGCTCAATACCATTAAAGacatCATTCTCCAGCAATTCACTGACGTTTCTCAACAATGTTTCCGAAACTACCCTGCTCTTCTAAATATCACTATGAACAAAATCGATAACATTCAGTCGAGCCAGCAAGCCAAAACGGAGCAGCGGATCATGGATCAGTTTGAAATGGAAAGCATGGTCTACACTCAAGATCCCATCTACTTGAAGTTCCTGAACGAGATTAGCGCTGAGAAATTTTCAGAAGAGCGGTTACCTGTCCTTGACGTAAAAAGCAAGTACAGTGAAATGCTGCAGGCGTATTATGAGATTGTGGTGCAGAGGATGGCTGACCAGCTGCCCATGCTGATCTCCTTCTACATGCTGAAGGAGACGGTTCAGCTCCTGTGTACTGACATGCTGAGTGTCCTGGGACGGGCAAACGTGAGCGAGCTCTTGTTTGAGGACTCAGACGTCAGCAAAAGACGCAAACACTTGCAGTCTCGCCTCGGCCGCTTGACCGCTGCTCATGACGAGCTAGTGAATTTATTTGAGAAATCAGACGATGTTGTCTTACATTATACATAATGTAGCTTATTTGACAACTTAAAGGCATAGTACACCCCAAATTGGAAATTACCCATATTTTACTCCtatgtgtatatgactttcttcttccagacaaacacagtcagagttttgtAAAAAGCTTGGTTACTTCCAAGCtcggtaatgctggtggatggcggccattattttgaagctctgtaaatcagACATATCCGCAATTAATGTGACATGAAACATACCTATACGCATTCGAGGGTTAT

Function

NR:

description
PREDICTED: interferon-induced GTP-binding protein Mx2-like

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221233.1 True 2432 mRNA 0.43 16 18090879 18100510

Neighbor

gene id symbol gene type direction distance location
LOC122326718 LOC107742471,LOC107661810,LOC107580836 coding downstream 158222 17930402 ~ 17932657 (-)
LOC122326387 LOC107742460,LOC107603220,LOC107661762 coding downstream 378744 17711255 ~ 17712135 (-)
stk32a stk32a,LOC107661787,LOC107562910,LOC107692947,LOC108414397 coding downstream 463035 17591086 ~ 17627844 (-)
oatx oatx,LOC107562907,LOC107742468,LOC107661788,LOC107692946,LOC107728280,LOC108440612 coding downstream 601975 17480409 ~ 17488904 (-)
LOC122326313 LOC107728266 coding downstream 610840 17463280 ~ 17480039 (-)
LOC122326768 LOC107661674,LOC107692986,LOC103038806,LOC108413784,LOC106567507,LOC105011225 coding upstream 163020 18263530 ~ 18332790 (-)
poglut3 kdelc2 coding upstream 397329 18497839 ~ 18534563 (-)
tmprss15 tmprss15 coding upstream 434163 18534673 ~ 18549914 (-)
si:dkey-71d15.2 LOC107757853,LOC107603213 coding upstream 459842 18560352 ~ 18564964 (-)
cdc23 cdc23,LOC107692994,LOC100380698,LOC107668434 coding upstream 474994 18575504 ~ 18585441 (-)
G147520 NA non-coding downstream 22936 18066280 ~ 18067943 (-)
G147468 NA non-coding downstream 57505 17554765 ~ 18033374 (-)
G147496 NA non-coding downstream 207865 17878662 ~ 17883014 (-)
G147474 NA non-coding downstream 412899 17676923 ~ 17677980 (-)
G147478 dpysl3,LOC107661764,LOC107742441,LOC107603222,LOC107713594,LOC107692982,LOC107562900 non-coding downstream 502505 17585068 ~ 17588374 (-)
G147671 NA non-coding upstream 230651 18331161 ~ 18408450 (-)
G147714 NA non-coding upstream 495575 18596085 ~ 18597397 (-)
G147718 larp1,LOC107757874,LOC107668436,LOC107571607,LOC107713603 non-coding upstream 503698 18604208 ~ 18605161 (-)
G147741 ddx46,LOC107668438,LOC107713612,LOC107571605,LOC107757870 non-coding upstream 610142 18710652 ~ 18712050 (-)
G147765 NA non-coding upstream 737321 18837831 ~ 18905662 (-)
LOC122326388 stk10,LOC107661763,LOC107692983,LOC107742442 other downstream 160718 17889232 ~ 17930161 (-)
fstl4 fstl4,LOC107692968,LOC107739207,LOC107566247,LOC106603823 other downstream 836507 17094588 ~ 17254372 (-)
frmd7 frmd7,LOC107715942,LOC107692958,LOC107577182 other downstream 1243658 16838338 ~ 16847221 (-)
LOC122326138 tmlhe,LOC107742426,LOC107703088,LOC107661707,LOC107715863 other downstream 1360849 16719072 ~ 16730030 (-)
LOC122326634 ppp1r36 other downstream 1456982 16627206 ~ 16633897 (-)
G147526 LOC107661679,LOC107728278,LOC107562904 other upstream 25719 18126229 ~ 18127999 (-)
G147531 NA other upstream 69570 18170080 ~ 18170584 (-)
G147673 gabrg2,LOC107661671,LOC107692990,LOC107603256 other upstream 257058 18357568 ~ 18468851 (-)
rbm11 LOC107572385 other upstream 449021 18549531 ~ 18553001 (-)
G147728 NA other upstream 599112 18699622 ~ 18701062 (-)

Expression


Co-expression Network