G13448


Basic Information

Item Value
gene id G13448
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1560388 ~ 1565557 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14983
TACTATTCAAATTCTTTATTGTTTTTGACTCCTTTCCAGCCTATACACTGAAGTCAACCTGCATTCAAAAGTCACTCTCTTTACATTTCCTGGTCTAATTGTACAATTCATCTGAACATGTCGTTACAAAGAATATCATAGTGAACTTATCAAAACATAATAACTTGCTCCACCTCTGAACTGCCTTTTCAAATGACGTCACAAATACCAATCGTTTTCAACCTCTCCAATTAACTCAATTCTGGTAAACAACACCAATGTTTCATGATGCATCAGTCATCAAGGATAAAACCAAATTCACATTGAATATCCTGTCAGAAATGCATCAATTTTTTTAATTTATTCAACTTTTTCAATATTCCGTATACGGTGATATACTGTGTATATTAATTATGCATGAGTTTGTACCTGGTTTGAACTGAATATCTCCTGTTAAAGTGGTTATTAAGCTGGTTATTCTAAAGTGTTCTAAAGTGTTCTAAACTGCATAAAGTATTCTTATATATAGTGAAAAGTGCAAATGCATAAATTGTCAATTTCAAAATATGTCAGTGATAGACATACAAATTAAATTGCTTTCACAGTCTACTGAAAGAAATCAAAGGAACAGCTTGAAAAAATAACTCACTTGGTAATGAGCTGTGCTTGTTTCTACAGTAAACACACACACACACACACACACACACACACACTAGTGCATGAGCAGAGACTGCCATTGCTCTTGTCCATACACGAGGAAGCTGACTGCGGTTCGGAGGTCCTCCAGGTCTATGTTGGCAAGGAAGGATCTCTGGAGTTCAGCTTCCACTGAGCTTCCGCCGGGCCCACGACCCTGCAGGAGCACCACAGCAGACTGACACAGCAGCCAGTCGACCATTTTATCCATTCTTGCCTGATCCAAGCTGGCCAAGACACGCTTGCCCCACATGCTGATGTGAAGTATGTTAGCGGCCACTCGT
>TU14984
TACTATTCAAATTCTTTATTGTTTTTGACTCCTTTCCAGCCTATACACTGAAGTCAACCTGCATTCAAAAGTCACTCTCTTTACATTTCCTGGTCTAATTGTACAATTCATCTGAACATGTCGTTACAAAGAATATCATAGTGAACTTATCAAAACATAATAACTTGCTCCACCTCTGAACTGCCTTTTCAAATGACGTCACAAATACCAATCGTTTTCAACCTCTCCAATTAACTCAATTCTGGTAAACAACACCAATGTTTCATGATGCATCAGTCATCAAGGATAAAACCAAATTCACATTGAATATCCTGTCAGAAATGCATCAATTTTTTTAATTTATTCAACTTTTTCAATATTCCGTATACGGTGATATACTGTGTATATTAATTATGCATGAGTTTGTACCTGGTTTGAACTGAATATCTCCTGTTAAAGTGGTTATTAAGCTGGTTATTCTAAAGTGTTCTAAAGTGTTCTAAACTGCATAAAGTATTCTTATATATAGTGAAAAGTGCAAATGCATAAATTGTCAATTTCAAAATATGTCAGTGATAGACATACAAATTAAATTGCTTTCACAGTCTACTGAAAGAAATCAAAGGAACAGCTTGAAAAAATAACTCACTTGGTAATGAGCTGTGCTTGTTTCTACAGTAAACACACACACACACACACACACACACACACTAGTGCATGAGCAGAGACTGCCATTGCTCTTGTCCATACACGAGGAAGCTGACTGCGGTTCGGAGGTCCTCCAGGTCTATGTTGGCAAGGAAGGATCTCTGGAGTTCAGCTTCCACTGAGCTTCCGCCGGGCCCACGACCCTGCAGGAGCACCACAGCAGACTGACACAGCAGCCAGTCGACCATTTTATCCATTCTTGCCTGATCCAAGCTGGCCAAGACACGCTTGCCCCACATGCTGATGTGAAGTATGTTAGCGGCCACTCGT
>TU14985
TACTATTCAAATTCTTTATTGTTTTTGACTCCTTTCCAGCCTATACACTGAAGTCAACCTGCATTCAAAAGTCACTCTCTTTACATTTCCTGGTCTAATTGTACAATTCATCTGAACATGTCGTTACAAAGAATATCATAGTGAACTTATCAAAACATAATAACTTGCTCCACCTCTGAACTGCCTTTTCAAATGACGTCACAAATACCAATCGTTTTCAACCTCTCCAATTAACTCAATTCTGGTAAACAACACCAATGTTTCATGATGCATCAGTCATCAAGGATAAAACCAAATTCACATTGAATATCCTGTCAGAAATGCATCAATTTTTTTAATTTATTCAACTTTTTCAATATTCCGTATACGGTGATATACTGTGTATATTAATTATGCATGAGTTTGTACCTGGTTTGAACTGAATATCTCCTGTTAAAGTGGTTATTAAGCTGGTTATTCTAAAGTGTTCTAAAGTGTTCTAAACTGCATAAAGTATTCTTATATATAGTGAAAAGTGCAAATGCATAAATTGTCAATTTCAAAATATGTCAGTGATAGACATACAAATTAAATTGCTTTCACAGTCTACTGAAAGAAATCAAAGGAACAGCTTGAAAAAATAACTCACTTGGTAATGAGCTGTGCTTGTTTCTACAGTAAACACACACACACACACNCACACACACACACACACACTAGTGCATGAGCAGAGACTGCCATTGCTCTTGTCCATACACGAGGAAGCTGACTGCGGTTCGGAGGTCCTCCAGGTCTATGTTGGCAAGGAAGGATCTCTGGAGTTCAGCTTCCACTGAGCTTCCGCCGGGCCCACGACCCTGCAGGAGCACCACAGCAGACTGACACAGCAGCCAGTCGACCATTTTATCCATTCTTGCCTGATCCAAGCTGGCCAAGACACGCTTGCCCCACATGCTGATGTGAAGTATGTTAGCGGCCACTCGT

Function

NR:

description
PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU14983 False 959 lncRNA 0.39 2 1560388 1565557
TU14984 False 957 lncRNA 0.49 2 1560388 1565557
TU14985 True 963 lncRNA 0.39 2 1560388 1565557

Neighbor

gene id symbol gene type direction distance location
CI01000001_01545235_01551987 DNAJC16 coding upstream 8365 1545235 ~ 1552023 (+)
CI01000001_01538233_01543680 NA coding upstream 16550 1538071 ~ 1543838 (+)
CI01000001_01530818_01536092 NA coding upstream 24153 1529799 ~ 1536235 (+)
CI01000001_01527865_01529016 NA coding upstream 31293 1527676 ~ 1529095 (+)
CI01000001_01517517_01521698 NA coding upstream 38345 1517182 ~ 1522043 (+)
CI01000001_01589727_01595957 NA coding downstream 24170 1589727 ~ 1596289 (+)
CI01000001_01656726_01659321 MUL1B, MUL1 coding downstream 90500 1656057 ~ 1659430 (+)
CI01000001_01668334_01670035 CAMK2N1B coding downstream 102205 1667762 ~ 1671167 (+)
CI01000001_01748436_01754956 DDX19A, DDX19B, RP11-529K1.3 coding downstream 182781 1748338 ~ 1754956 (+)
CI01000001_01762809_01771029 CPSF3L coding downstream 197252 1762809 ~ 1771029 (+)
G13493 NA non-coding upstream 143736 1416412 ~ 1416652 (+)
G13492 NA non-coding upstream 149317 1410678 ~ 1411071 (+)
G13442 NA non-coding upstream 182365 1302726 ~ 1378023 (+)
G13435 NA non-coding upstream 271888 1286954 ~ 1288500 (+)
G13434 NA non-coding upstream 273658 1286317 ~ 1286730 (+)
G13570 NA non-coding downstream 98708 1664265 ~ 1664492 (+)
G13574 NA non-coding downstream 117207 1682764 ~ 1683123 (+)
G13697 NA non-coding downstream 137427 1702984 ~ 1704437 (+)
G13761 NA non-coding downstream 212828 1778385 ~ 1778757 (+)
G13051 NA other upstream 515236 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1068331 483853 ~ 488825 (+)
G12614 NA other upstream 1249447 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 2050691 3618075 ~ 3621451 (+)
G15794 NA other downstream 3495661 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3721192 5279837 ~ 5287698 (+)
G15995 NA other downstream 4146328 5711885 ~ 5714951 (+)

Expression


Co-expression Network